Wall clock time and date at job start Wed Apr 1 2020 02:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.30621 * 2 1 4 4 N 1.46498 * 109.46946 * 59.29864 * 3 2 1 5 5 C 1.36941 * 119.99987 * 179.97438 * 4 3 2 6 6 H 1.07989 * 119.99738 * 0.02562 * 5 4 3 7 7 C 1.38808 * 119.99648 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00545 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99659 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47025 * 60.00006 * 9 7 5 11 11 H 1.48497 * 109.46764 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47029 * 299.99722 * 9 7 5 13 13 C 1.54282 * 110.34571 * 122.17945 * 2 1 3 14 14 C 1.54388 * 104.96063 * 118.97300 * 13 2 1 15 15 N 1.48142 * 104.61870 * 23.87130 * 14 13 2 16 16 C 1.34776 * 127.84229 * 140.42544 * 15 14 13 17 17 O 1.21283 * 120.00398 * 179.97438 * 16 15 14 18 18 C 1.50701 * 119.99674 * 359.96899 * 16 15 14 19 19 C 1.53004 * 109.47159 * 185.62653 * 18 16 15 20 20 H 1.09004 * 110.26495 * 307.75723 * 19 18 16 21 21 C 1.54346 * 110.30441 * 69.93365 * 19 18 16 22 22 C 1.54347 * 102.39083 * 145.26900 * 21 19 18 23 23 C 1.51365 * 105.17040 * 333.65149 * 22 21 19 24 24 C 1.38492 * 130.38875 * 197.17539 * 23 22 21 25 25 C 1.38108 * 120.22027 * 180.02562 * 24 23 22 26 26 C 1.38256 * 119.92614 * 359.97052 * 25 24 23 27 27 C 1.38097 * 119.94087 * 359.97438 * 26 25 24 28 28 C 1.38217 * 109.76190 * 17.19506 * 23 22 21 29 29 C 1.48421 * 104.33871 * 320.38426 * 15 14 13 30 30 H 1.09004 * 109.47158 * 60.69999 * 1 2 3 31 31 H 1.09000 * 109.47064 * 180.69521 * 1 2 3 32 32 H 1.08998 * 109.46826 * 300.69711 * 1 2 3 33 33 H 1.08999 * 109.46911 * 299.30186 * 3 2 1 34 34 H 1.09003 * 109.47175 * 179.30163 * 3 2 1 35 35 H 0.97008 * 119.99907 * 0.02562 * 4 3 2 36 36 H 0.97003 * 119.99856 * 359.97438 * 8 7 5 37 37 H 1.08999 * 110.34282 * 237.84800 * 13 2 1 38 38 H 1.09003 * 110.33931 * 359.97438 * 13 2 1 39 39 H 1.09011 * 110.40367 * 142.65172 * 14 13 2 40 40 H 1.09003 * 110.41012 * 265.08180 * 14 13 2 41 41 H 1.09000 * 109.47445 * 305.62339 * 18 16 15 42 42 H 1.08999 * 109.47175 * 65.62418 * 18 16 15 43 43 H 1.08998 * 110.81974 * 263.49940 * 21 19 18 44 44 H 1.09001 * 110.81689 * 27.04218 * 21 19 18 45 45 H 1.09004 * 110.30008 * 214.72377 * 22 21 19 46 46 H 1.09003 * 110.38520 * 92.61846 * 22 21 19 47 47 H 1.08006 * 119.89156 * 0.03188 * 24 23 22 48 48 H 1.07990 * 120.03834 * 179.97438 * 25 24 23 49 49 H 1.07996 * 120.02669 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.89359 * 180.02562 * 27 26 25 51 51 H 1.09000 * 110.45024 * 280.87901 * 29 15 14 52 52 H 1.08997 * 110.49701 * 158.35606 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4349 0.0000 4 7 1.5690 2.1376 1.1876 5 6 1.9169 3.4444 1.4031 6 1 2.5534 3.9571 0.6973 7 6 1.4512 4.1100 2.5287 8 7 0.6757 3.4849 3.3891 9 14 1.9251 5.8929 2.8222 10 1 1.4463 6.7253 1.6895 11 1 1.3037 6.3688 4.0842 12 1 3.4023 6.0017 2.9267 13 6 2.0664 -0.7704 1.2244 14 6 2.8824 -1.9401 0.6331 15 7 3.2692 -1.4794 -0.7207 16 6 4.4460 -1.6627 -1.3516 17 8 4.6102 -1.2210 -2.4692 18 6 5.5578 -2.4165 -0.6684 19 6 6.8183 -2.3616 -1.5340 20 1 6.5930 -2.6860 -2.5499 21 6 7.4001 -0.9320 -1.5426 22 6 8.9201 -1.1934 -1.6029 23 6 9.1127 -2.5568 -0.9741 24 6 10.2545 -3.1622 -0.4763 25 6 10.1901 -4.4337 0.0590 26 6 8.9821 -5.1049 0.0989 27 6 7.8422 -4.5025 -0.3959 28 6 7.9052 -3.2281 -0.9346 29 6 2.0667 -0.7708 -1.2254 30 1 -0.3634 0.5029 -0.8962 31 1 -0.3633 -1.0276 0.0125 32 1 -0.3633 0.5246 0.8837 33 1 1.7153 1.9502 -0.8962 34 1 3.1508 1.4191 0.0125 35 1 0.9975 1.6769 1.8218 36 1 0.4293 2.5592 3.2365 37 1 2.7081 -0.1266 1.8258 38 1 1.2398 -1.1485 1.8260 39 1 3.7693 -2.1288 1.2382 40 1 2.2676 -2.8378 0.5679 41 1 5.7627 -1.9622 0.3010 42 1 5.2591 -3.4552 -0.5270 43 1 7.0661 -0.3831 -2.4231 44 1 7.1343 -0.4000 -0.6291 45 1 9.4572 -0.4349 -1.0333 46 1 9.2632 -1.2022 -2.6375 47 1 11.1985 -2.6382 -0.5067 48 1 11.0823 -4.9031 0.4460 49 1 8.9299 -6.0994 0.5168 50 1 6.8988 -5.0273 -0.3640 51 1 1.3241 -1.4858 -1.5798 52 1 2.3382 -0.0775 -2.0214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754709043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:29 Heat of formation + Delta-G solvation = -6.564761 kcal Electronic energy + Delta-G solvation = -29937.207785 eV Core-core repulsion = 26093.958298 eV Total energy + Delta-G solvation = -3843.249487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.71842 -39.89699 -38.14165 -35.98464 -34.96503 -33.00958 -32.39936 -30.39646 -29.96924 -29.42996 -28.96159 -26.87412 -25.60194 -24.57125 -23.09380 -22.84584 -22.58763 -21.17498 -20.57271 -19.21657 -18.62707 -17.35148 -17.24753 -16.39992 -16.05549 -15.85577 -15.41962 -15.11841 -15.03574 -14.70279 -14.36532 -13.85155 -13.62765 -13.50671 -13.45743 -13.38693 -13.13639 -12.89706 -12.85497 -12.61855 -12.38599 -12.26490 -12.06717 -11.86837 -11.70861 -11.37486 -11.29366 -11.10620 -10.98048 -10.91815 -10.88091 -10.72899 -10.50505 -10.32570 -10.19295 -9.96660 -9.78838 -9.17566 -9.03963 -8.87369 -8.72820 -8.67153 -6.98674 -6.09893 -3.08799 1.12370 1.15418 2.65554 2.94616 3.52480 3.52884 3.55788 3.73088 4.15421 4.25274 4.50371 4.65912 4.67584 4.72631 4.73740 4.77736 4.85551 4.92283 5.01931 5.06484 5.22080 5.22637 5.26984 5.27911 5.33135 5.38798 5.46095 5.54692 5.62995 5.64349 5.68826 5.73116 5.77723 5.83084 5.85420 5.88070 5.89868 5.92778 6.03926 6.11039 6.13584 6.22446 6.26560 6.27334 6.33929 6.45378 6.48117 6.56004 6.72124 6.76632 6.80255 7.58939 7.82670 8.17889 8.76706 9.24061 10.10320 10.25904 11.38750 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.002501 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.736697 B =11194.291743 C =12296.792922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C 0.175 3.825 4 N -0.740 5.740 5 C -0.328 4.328 6 H 0.063 0.937 7 C -0.046 4.046 8 N -0.945 5.945 9 Si 1.079 2.921 10 H -0.295 1.295 11 H -0.285 1.285 12 H -0.296 1.296 13 C -0.126 4.126 14 C 0.101 3.899 15 N -0.621 5.621 16 C 0.535 3.465 17 O -0.542 6.542 18 C -0.128 4.128 19 C -0.032 4.032 20 H 0.097 0.903 21 C -0.112 4.112 22 C -0.084 4.084 23 C -0.092 4.092 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.106 4.106 28 C -0.090 4.090 29 C 0.117 3.883 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.367 0.633 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.070 0.930 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.498 -19.581 -7.740 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.083 4.083 3 C 0.047 3.953 4 N -0.386 5.386 5 C -0.459 4.459 6 H 0.081 0.919 7 C -0.243 4.243 8 N -0.591 5.591 9 Si 0.910 3.090 10 H -0.223 1.223 11 H -0.210 1.210 12 H -0.223 1.223 13 C -0.164 4.164 14 C -0.022 4.022 15 N -0.355 5.355 16 C 0.324 3.676 17 O -0.420 6.420 18 C -0.168 4.168 19 C -0.051 4.051 20 H 0.115 0.885 21 C -0.150 4.150 22 C -0.121 4.121 23 C -0.092 4.092 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.124 4.124 28 C -0.090 4.090 29 C -0.006 4.006 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.201 0.799 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.088 0.912 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.669 -17.935 -7.522 23.771 hybrid contribution 0.008 -1.533 -0.721 1.694 sum 13.677 -19.468 -8.243 25.179 Atomic orbital electron populations 1.21777 0.93382 1.00728 1.03021 1.21708 0.96158 0.96588 0.93881 1.20581 0.95867 0.88117 0.90731 1.42369 1.60503 1.11377 1.24360 1.20028 1.28689 0.88785 1.08408 0.91937 1.25737 0.98942 1.06030 0.93585 1.70899 1.38197 1.12381 1.37635 0.83252 0.75349 0.74513 0.75901 1.22295 1.21045 1.22324 1.22653 1.00065 0.96205 0.97485 1.22452 0.99281 0.97485 0.82954 1.49060 1.13072 1.55648 1.17713 1.20210 0.81655 0.79955 0.85767 1.90689 1.80862 1.50990 1.19418 1.21720 0.93291 1.01374 1.00386 1.20464 0.90979 0.94491 0.99147 0.88545 1.22377 0.93442 0.95663 1.03499 1.21105 0.97303 0.93173 1.00558 1.20657 0.93474 0.96745 0.98316 1.20644 0.97564 0.95302 0.99235 1.21034 0.97907 0.94853 1.00174 1.21022 0.92657 0.99918 1.00473 1.20632 0.98603 0.94197 0.99006 1.20596 0.95487 0.94403 0.98536 1.22456 0.85804 0.95309 0.97058 0.92566 0.93194 0.91397 0.96275 0.96322 0.79862 0.93548 0.89745 0.90413 0.90503 0.91194 0.88739 0.88917 0.89564 0.90974 0.90625 0.90152 0.86320 0.86026 0.85993 0.86327 0.91196 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.06 37.16 0.30 -1.62 16 2 C -0.08 -1.27 0.73 -153.11 -0.11 -1.38 16 3 C 0.17 3.59 4.89 -4.04 -0.02 3.57 16 4 N -0.74 -18.33 4.95 -59.91 -0.30 -18.63 16 5 C -0.33 -9.32 9.99 -15.06 -0.15 -9.47 16 6 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 8 N -0.95 -28.99 13.70 55.49 0.76 -28.23 16 9 Si 1.08 26.12 29.92 -169.99 -5.09 21.04 16 10 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.13 -1.76 5.84 -25.33 -0.15 -1.90 16 14 C 0.10 1.13 6.92 -2.41 -0.02 1.11 16 15 N -0.62 -8.29 3.32 -169.07 -0.56 -8.85 16 16 C 0.53 7.41 7.67 -10.99 -0.08 7.33 16 17 O -0.54 -9.21 15.41 5.56 0.09 -9.12 16 18 C -0.13 -1.35 4.12 -27.88 -0.11 -1.46 16 19 C -0.03 -0.35 2.48 -90.73 -0.22 -0.58 16 20 H 0.10 1.13 7.80 -51.93 -0.40 0.73 16 21 C -0.11 -1.26 5.86 -25.32 -0.15 -1.41 16 22 C -0.08 -0.81 6.77 -26.85 -0.18 -1.00 16 23 C -0.09 -0.94 6.14 -104.21 -0.64 -1.58 16 24 C -0.11 -1.00 10.04 -39.54 -0.40 -1.40 16 25 C -0.12 -1.02 10.05 -39.62 -0.40 -1.41 16 26 C -0.12 -1.02 10.05 -39.63 -0.40 -1.42 16 27 C -0.11 -0.97 9.68 -39.54 -0.38 -1.36 16 28 C -0.09 -0.93 5.61 -104.20 -0.58 -1.52 16 29 C 0.12 1.64 6.16 -2.25 -0.01 1.63 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.14 6.87 -51.93 -0.36 0.79 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.37 9.11 5.06 -40.82 -0.21 8.91 16 36 H 0.25 7.59 6.77 -40.82 -0.28 7.31 16 37 H 0.08 1.42 7.53 -51.93 -0.39 1.03 16 38 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 39 H 0.08 0.75 7.14 -51.92 -0.37 0.38 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.97 7.53 -51.93 -0.39 0.58 16 42 H 0.09 0.79 7.57 -51.93 -0.39 0.40 16 43 H 0.09 1.06 7.84 -51.93 -0.41 0.65 16 44 H 0.07 0.85 7.80 -51.93 -0.40 0.45 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.88 7.67 -52.49 -0.40 0.48 16 51 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 52 H 0.08 1.31 7.61 -51.93 -0.40 0.91 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -33.63 406.92 -11.42 -45.05 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.64 Total: 7.91 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -3.81 Total: -15.30 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.10 Total: -55.71 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.09 Total: 21.04 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.63 -11.42 -45.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754709043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.485 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds