Wall clock time and date at job start Wed Apr 1 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 110.63956 * 2 1 4 4 N 1.46505 * 109.47342 * 56.85943 * 3 2 1 5 5 C 1.36932 * 119.99974 * 179.97438 * 4 3 2 6 6 H 1.08008 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00173 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99309 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47267 * 90.00187 * 9 7 5 11 11 H 1.48499 * 109.47142 * 209.99924 * 9 7 5 12 12 H 1.48495 * 109.47383 * 329.99741 * 9 7 5 13 13 C 1.55156 * 110.71921 * 123.33632 * 2 1 3 14 14 C 1.55128 * 101.48819 * 82.69389 * 13 2 1 15 15 N 1.47426 * 104.72234 * 37.29404 * 14 13 2 16 16 C 1.34773 * 125.64882 * 155.81219 * 15 14 13 17 17 O 1.21285 * 119.99918 * 179.69327 * 16 15 14 18 18 C 1.50701 * 120.00066 * 359.69790 * 16 15 14 19 19 C 1.53004 * 109.47135 * 174.35743 * 18 16 15 20 20 H 1.08999 * 110.34873 * 52.19120 * 19 18 16 21 21 C 1.54347 * 110.30298 * 290.06903 * 19 18 16 22 22 C 1.54353 * 102.39195 * 214.72836 * 21 19 18 23 23 C 1.51365 * 105.16745 * 26.34185 * 22 21 19 24 24 C 1.38504 * 130.39215 * 162.82445 * 23 22 21 25 25 C 1.38102 * 120.21502 * 179.97438 * 24 23 22 26 26 C 1.38252 * 119.93968 * 0.02562 * 25 24 23 27 27 C 1.38113 * 119.93037 * 359.97438 * 26 25 24 28 28 C 1.38219 * 109.76439 * 342.82197 * 23 22 21 29 29 C 1.47024 * 108.70240 * 335.55788 * 15 14 13 30 30 H 1.09004 * 109.47640 * 183.13918 * 1 2 3 31 31 H 1.09000 * 109.47279 * 303.14081 * 1 2 3 32 32 H 1.09003 * 109.47105 * 63.14146 * 1 2 3 33 33 H 1.09005 * 109.47022 * 176.85585 * 3 2 1 34 34 H 1.08993 * 109.47369 * 296.85476 * 3 2 1 35 35 H 0.97002 * 119.99534 * 359.97438 * 4 3 2 36 36 H 0.96995 * 119.99715 * 179.97438 * 8 7 5 37 37 H 1.08994 * 111.00599 * 200.93812 * 13 2 1 38 38 H 1.09005 * 111.00461 * 324.74769 * 13 2 1 39 39 H 1.09003 * 110.50083 * 278.45702 * 14 13 2 40 40 H 1.08994 * 110.34474 * 156.05778 * 14 13 2 41 41 H 1.09001 * 109.47063 * 54.36260 * 18 16 15 42 42 H 1.08992 * 109.47246 * 294.35609 * 18 16 15 43 43 H 1.08992 * 110.82542 * 96.49971 * 21 19 18 44 44 H 1.09002 * 110.82038 * 332.95134 * 21 19 18 45 45 H 1.08994 * 110.30023 * 267.41881 * 22 21 19 46 46 H 1.08996 * 110.30330 * 145.26159 * 22 21 19 47 47 H 1.07998 * 119.89360 * 359.97438 * 24 23 22 48 48 H 1.08005 * 120.03105 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.03678 * 179.97438 * 26 25 24 50 50 H 1.07995 * 119.88666 * 179.97438 * 27 26 25 51 51 H 1.08992 * 109.88786 * 120.70023 * 29 15 14 52 52 H 1.09004 * 109.87623 * 241.71250 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4317 0.0000 4 7 1.5348 2.1550 1.1566 5 6 1.8818 3.4629 1.3663 6 1 2.5498 3.9612 0.6794 7 6 1.3749 4.1484 2.4619 8 7 0.5604 3.5411 3.2987 9 14 1.8488 5.9323 2.7484 10 1 0.8783 6.8193 2.0581 11 1 1.8336 6.2207 4.2050 12 1 3.2112 6.1752 2.2100 13 6 2.0789 -0.7975 1.2124 14 6 2.0074 -2.2537 0.6824 15 7 2.3715 -2.1520 -0.7426 16 6 2.8849 -3.1453 -1.4950 17 8 3.1429 -2.9494 -2.6638 18 6 3.1383 -4.4994 -0.8840 19 6 3.5850 -5.4754 -1.9744 20 1 4.4185 -5.0573 -2.5389 21 6 2.4077 -5.7991 -2.9186 22 6 2.6701 -7.2764 -3.2807 23 6 3.4528 -7.8374 -2.1129 24 6 3.6867 -9.1497 -1.7367 25 6 4.4433 -9.4269 -0.6151 26 6 4.9689 -8.3919 0.1357 27 6 4.7368 -7.0826 -0.2378 28 6 3.9784 -6.8027 -1.3622 29 6 2.0760 -0.7892 -1.2086 30 1 -0.3634 -1.0261 0.0563 31 1 -0.3634 0.5618 0.8605 32 1 -0.3633 0.4643 -0.9168 33 1 3.1576 1.4100 0.0564 34 1 1.7630 1.9354 -0.9168 35 1 0.9351 1.7072 1.7737 36 1 0.2065 4.0199 4.0644 37 1 3.1060 -0.5098 1.4367 38 1 1.4399 -0.6692 2.0862 39 1 0.9973 -2.6493 0.7884 40 1 2.7206 -2.8852 1.2119 41 1 2.2221 -4.8664 -0.4212 42 1 3.9193 -4.4167 -0.1283 43 1 2.4404 -5.1704 -3.8083 44 1 1.4547 -5.6904 -2.4009 45 1 3.2574 -7.3428 -4.1964 46 1 1.7271 -7.8109 -3.3955 47 1 3.2761 -9.9589 -2.3224 48 1 4.6235 -10.4513 -0.3243 49 1 5.5605 -8.6068 1.0133 50 1 5.1474 -6.2746 0.3494 51 1 2.9868 -0.3180 -1.5780 52 1 1.3283 -0.8224 -2.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754709045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:37 Heat of formation + Delta-G solvation = -9.730928 kcal Electronic energy + Delta-G solvation = -29451.324328 eV Core-core repulsion = 25607.937546 eV Total energy + Delta-G solvation = -3843.386782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -40.78325 -39.95101 -38.13435 -36.04392 -34.84089 -32.87170 -32.39355 -30.50301 -30.05815 -29.33422 -29.01916 -26.93766 -25.92018 -24.71291 -22.96317 -22.90918 -22.42126 -21.23392 -20.58953 -19.17350 -18.66858 -17.40463 -17.03946 -16.46024 -16.24605 -15.70195 -15.40884 -15.14845 -15.03824 -14.55891 -14.27371 -13.97030 -13.93605 -13.64524 -13.30242 -13.17375 -13.13821 -12.92982 -12.80410 -12.48706 -12.39615 -12.13953 -12.09642 -11.82563 -11.65032 -11.51651 -11.42717 -11.17554 -11.05769 -11.01569 -10.95648 -10.83896 -10.58713 -10.34456 -10.25824 -9.98610 -9.81398 -9.64912 -9.08541 -8.89118 -8.78188 -8.59400 -6.93495 -5.78891 -3.06738 1.07510 1.10728 2.63157 2.98317 3.42626 3.48130 3.48361 3.49440 4.10008 4.19671 4.47560 4.57911 4.62072 4.68431 4.71851 4.73948 4.81287 4.90849 4.99477 5.05946 5.15816 5.20421 5.24151 5.28242 5.30728 5.39074 5.46996 5.52406 5.57749 5.59553 5.64310 5.71744 5.77198 5.80835 5.88761 5.95231 5.99456 6.02931 6.05420 6.08873 6.20731 6.22581 6.23479 6.32433 6.38745 6.40647 6.45575 6.64990 6.71990 6.75515 6.83285 7.54955 7.69163 8.16477 8.40538 9.52120 10.09071 10.44392 11.44094 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025431 B = 0.001890 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.756421 B =14813.976812 C =15323.588290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 C 0.168 3.832 4 N -0.728 5.728 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.116 4.116 14 C 0.097 3.903 15 N -0.615 5.615 16 C 0.526 3.474 17 O -0.544 6.544 18 C -0.128 4.128 19 C -0.033 4.033 20 H 0.097 0.903 21 C -0.111 4.111 22 C -0.084 4.084 23 C -0.094 4.094 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.106 4.106 28 C -0.090 4.090 29 C 0.119 3.881 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -26.804 -8.170 28.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.079 4.079 3 C 0.040 3.960 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.154 4.154 14 C -0.026 4.026 15 N -0.349 5.349 16 C 0.315 3.685 17 O -0.422 6.422 18 C -0.167 4.167 19 C -0.052 4.052 20 H 0.115 0.885 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.090 4.090 29 C -0.004 4.004 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.138 0.862 51 H 0.087 0.913 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.821 -26.594 -8.860 28.442 hybrid contribution 0.066 0.860 0.636 1.072 sum 4.887 -25.733 -8.224 27.454 Atomic orbital electron populations 1.21767 0.93336 1.00703 1.03169 1.21791 0.96442 0.96191 0.93427 1.20592 0.95672 0.87950 0.91748 1.42339 1.56952 1.10722 1.27292 1.19230 1.22861 0.87888 1.06925 0.91232 1.24718 1.00115 0.98322 0.97830 1.69648 1.36327 1.36251 1.16062 0.86190 0.77951 0.85067 0.76988 1.21759 1.21814 1.20806 1.22857 1.02787 0.91740 0.98038 1.22496 1.00210 0.99118 0.80763 1.48561 1.62751 1.11825 1.11741 1.20264 0.76840 0.85318 0.86057 1.90687 1.52254 1.82838 1.16377 1.21718 1.03626 0.92079 0.99327 1.20468 0.99142 0.90732 0.94846 0.88461 1.22364 0.97458 0.94977 1.00051 1.21097 0.99284 0.95787 0.95922 1.20639 0.98559 0.93147 0.97066 1.20631 0.99480 0.95337 0.97344 1.21037 0.98289 0.99150 0.95495 1.21047 1.00379 0.92515 1.00017 1.20664 0.98598 0.96773 0.96325 1.20587 0.97661 0.95465 0.95280 1.22023 1.00456 0.81121 0.96781 0.93552 0.90798 0.92656 0.96108 0.96052 0.78063 0.93547 0.90260 0.89280 0.91262 0.90878 0.88913 0.88769 0.89614 0.91214 0.90152 0.90753 0.86377 0.86026 0.85922 0.86203 0.91300 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.27 37.16 0.31 -1.68 16 2 C -0.08 -1.18 0.61 -152.68 -0.09 -1.28 16 3 C 0.17 3.27 5.09 -4.04 -0.02 3.25 16 4 N -0.73 -17.57 5.15 -59.91 -0.31 -17.88 16 5 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 6 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 9 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.12 -1.60 5.74 -24.46 -0.14 -1.74 16 14 C 0.10 1.06 6.37 -2.41 -0.02 1.05 16 15 N -0.61 -7.90 3.32 -170.38 -0.57 -8.47 16 16 C 0.53 6.82 7.61 -10.99 -0.08 6.74 16 17 O -0.54 -8.76 15.46 5.55 0.09 -8.67 16 18 C -0.13 -1.22 3.96 -27.88 -0.11 -1.33 16 19 C -0.03 -0.33 2.48 -90.74 -0.22 -0.55 16 20 H 0.10 1.08 7.80 -51.93 -0.41 0.68 16 21 C -0.11 -1.03 5.86 -25.32 -0.15 -1.18 16 22 C -0.08 -0.68 6.77 -26.85 -0.18 -0.86 16 23 C -0.09 -0.86 6.14 -104.20 -0.64 -1.50 16 24 C -0.11 -0.89 10.04 -39.53 -0.40 -1.29 16 25 C -0.12 -0.92 10.05 -39.63 -0.40 -1.32 16 26 C -0.12 -0.95 10.05 -39.62 -0.40 -1.35 16 27 C -0.11 -0.91 9.68 -39.53 -0.38 -1.29 16 28 C -0.09 -0.85 5.60 -104.21 -0.58 -1.43 16 29 C 0.12 1.71 6.04 -3.06 -0.02 1.69 16 30 H 0.05 0.60 7.39 -51.93 -0.38 0.21 16 31 H 0.07 1.28 6.69 -51.93 -0.35 0.93 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.38 9.58 6.21 -40.82 -0.25 9.33 16 36 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 38 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 39 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 40 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 41 H 0.09 0.78 7.96 -51.93 -0.41 0.37 16 42 H 0.09 0.78 7.51 -51.93 -0.39 0.39 16 43 H 0.09 0.89 7.84 -51.93 -0.41 0.48 16 44 H 0.07 0.64 7.80 -51.93 -0.40 0.23 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 49 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.87 7.67 -52.49 -0.40 0.47 16 51 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 52 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 LS Contribution 408.62 15.07 6.16 6.16 Total: -1.00 -31.67 408.62 -11.48 -43.15 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.78 Total: 6.56 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -3.78 Total: -11.22 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.15 Total: -53.13 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.67 -11.48 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754709045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.422 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.62 seconds