Wall clock time and date at job start Wed Apr 1 2020 02:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88739 * 2 1 4 4 N 1.46497 * 109.46907 * 303.88152 * 3 2 1 5 5 C 1.36947 * 119.99805 * 179.97438 * 4 3 2 6 6 H 1.07992 * 119.99747 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99496 * 179.97438 * 5 4 3 8 8 N 1.31628 * 119.99674 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00678 * 0.02562 * 7 5 4 10 10 H 1.48508 * 109.47198 * 89.99834 * 9 7 5 11 11 H 1.48500 * 109.47646 * 209.99664 * 9 7 5 12 12 H 1.48501 * 109.47151 * 330.00108 * 9 7 5 13 13 C 1.55405 * 110.89394 * 236.11311 * 2 1 3 14 14 C 1.54325 * 102.82616 * 277.26684 * 13 2 1 15 15 N 1.47018 * 107.40412 * 337.97548 * 14 13 2 16 16 C 1.34777 * 125.64981 * 178.82520 * 15 14 13 17 17 O 1.21275 * 120.00167 * 180.02562 * 16 15 14 18 18 C 1.50694 * 119.99872 * 0.02817 * 16 15 14 19 19 C 1.53000 * 109.47301 * 179.97438 * 18 16 15 20 20 H 1.09004 * 110.26788 * 305.69883 * 19 18 16 21 21 C 1.54352 * 110.30505 * 183.62864 * 19 18 16 22 22 C 1.54608 * 102.26984 * 267.39207 * 21 19 18 23 23 C 1.51371 * 105.18686 * 333.64097 * 22 21 19 24 24 C 1.38498 * 130.39210 * 197.20167 * 23 22 21 25 25 C 1.38092 * 120.21622 * 179.97438 * 24 23 22 26 26 C 1.38253 * 119.93651 * 0.02562 * 25 24 23 27 27 C 1.38098 * 119.93496 * 0.02562 * 26 25 24 28 28 C 1.38214 * 109.75869 * 17.20419 * 23 22 21 29 29 C 1.47426 * 108.70517 * 358.86539 * 15 14 13 30 30 H 1.08996 * 109.47127 * 296.12136 * 1 2 3 31 31 H 1.08997 * 109.46908 * 56.11930 * 1 2 3 32 32 H 1.09001 * 109.46975 * 176.12030 * 1 2 3 33 33 H 1.09003 * 109.47219 * 63.87486 * 3 2 1 34 34 H 1.08993 * 109.47390 * 183.87692 * 3 2 1 35 35 H 0.96995 * 120.00639 * 359.97438 * 4 3 2 36 36 H 0.96998 * 120.00187 * 180.02562 * 8 7 5 37 37 H 1.09000 * 110.69068 * 158.97943 * 13 2 1 38 38 H 1.09002 * 110.85092 * 35.62937 * 13 2 1 39 39 H 1.09002 * 109.88192 * 218.47989 * 14 13 2 40 40 H 1.09000 * 109.88128 * 97.46841 * 14 13 2 41 41 H 1.08997 * 109.47569 * 299.99781 * 18 16 15 42 42 H 1.09007 * 109.47441 * 59.99852 * 18 16 15 43 43 H 1.08996 * 110.82151 * 25.64556 * 21 19 18 44 44 H 1.08996 * 110.82395 * 149.20101 * 21 19 18 45 45 H 1.08998 * 110.28107 * 214.72123 * 22 21 19 46 46 H 1.09000 * 110.38832 * 92.62339 * 22 21 19 47 47 H 1.08001 * 119.88920 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.03373 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.03362 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.89502 * 179.97438 * 27 26 25 51 51 H 1.08999 * 110.36956 * 142.96999 * 29 15 14 52 52 H 1.09003 * 110.36599 * 265.28903 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 7 1.5302 2.1601 -1.1467 5 6 1.8795 3.4680 -1.3541 6 1 2.5565 3.9607 -0.6722 7 6 1.3632 4.1601 -2.4409 8 7 1.6993 5.4170 -2.6406 9 14 0.1915 3.3081 -3.6201 10 1 -1.2054 3.4967 -3.1525 11 1 0.3424 3.8926 -4.9768 12 1 0.5057 1.8575 -3.6682 13 6 2.0842 -0.8095 -1.2052 14 6 2.0286 -2.2649 -0.6951 15 7 2.0139 -2.2156 0.7742 16 6 1.9457 -3.2822 1.5954 17 8 1.9398 -3.1225 2.7975 18 6 1.8768 -4.6731 1.0196 19 6 1.8079 -5.6933 2.1577 20 1 2.6395 -5.5468 2.8471 21 6 1.8283 -7.1292 1.5918 22 6 0.3220 -7.4493 1.4536 23 6 -0.3641 -6.5820 2.4872 24 6 -1.6351 -6.6688 3.0307 25 6 -2.0511 -5.7514 3.9753 26 6 -1.1971 -4.7423 4.3800 27 6 0.0701 -4.6534 3.8385 28 6 0.4896 -5.5732 2.8918 29 6 2.0852 -0.8062 1.2007 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0695 33 1 1.7822 1.9303 0.9227 34 1 3.1629 1.4034 -0.0695 35 1 0.9218 1.7177 -1.7590 36 1 1.3382 5.9008 -3.3999 37 1 3.1108 -0.5172 -1.4261 38 1 1.4491 -0.6836 -2.0821 39 1 2.9064 -2.8121 -1.0389 40 1 1.1232 -2.7508 -1.0587 41 1 0.9882 -4.7643 0.3952 42 1 2.7653 -4.8613 0.4168 43 1 2.3222 -7.1559 0.6205 44 1 2.3079 -7.8144 2.2907 45 1 0.1390 -8.5033 1.6626 46 1 -0.0298 -7.1960 0.4535 47 1 -2.3029 -7.4566 2.7148 48 1 -3.0427 -5.8221 4.3975 49 1 -1.5211 -4.0237 5.1183 50 1 0.7366 -3.8646 4.1548 51 1 1.4672 -0.6453 2.0840 52 1 3.1182 -0.5228 1.4028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754709047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:45 Heat of formation + Delta-G solvation = -0.672021 kcal Electronic energy + Delta-G solvation = -30196.052974 eV Core-core repulsion = 26353.059015 eV Total energy + Delta-G solvation = -3842.993958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.86651 -39.90478 -38.09558 -36.16992 -35.03374 -32.77041 -32.05150 -30.83238 -30.04173 -29.59021 -28.98864 -27.10808 -26.21021 -24.94613 -23.01219 -22.80073 -22.07572 -21.06738 -20.45355 -19.36690 -18.87563 -17.74422 -17.07163 -16.48414 -16.40766 -15.81685 -15.25231 -15.15348 -14.91198 -14.60320 -14.38735 -14.11252 -13.86788 -13.69756 -13.35501 -13.19455 -12.92972 -12.89807 -12.81963 -12.51261 -12.47779 -12.34170 -12.21989 -11.88803 -11.83728 -11.61715 -11.42389 -11.34715 -11.27214 -11.07807 -10.92193 -10.70866 -10.59554 -10.45382 -10.42425 -10.10081 -9.80059 -9.59468 -8.92667 -8.87405 -8.67161 -8.62475 -7.25404 -5.79000 -3.14500 1.22840 1.33527 2.57586 2.91153 3.32462 3.35603 3.42074 3.65563 4.10265 4.22432 4.37260 4.53352 4.55877 4.59640 4.70143 4.81760 4.89033 4.91676 4.97825 5.00201 5.12470 5.18482 5.22965 5.23782 5.29488 5.38777 5.42383 5.47505 5.52032 5.57654 5.58504 5.66220 5.67513 5.70824 5.79934 5.83027 5.86892 5.93170 5.96497 6.08147 6.10628 6.13899 6.23521 6.32905 6.35392 6.45357 6.50264 6.61522 6.62903 6.68774 6.94482 7.48639 7.97401 8.14654 8.40003 9.18907 9.90945 10.10794 11.39516 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018853 B = 0.002348 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.782288 B =11921.128426 C =12140.414502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 C 0.174 3.826 4 N -0.752 5.752 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.120 4.120 14 C 0.101 3.899 15 N -0.615 5.615 16 C 0.528 3.472 17 O -0.538 6.538 18 C -0.125 4.125 19 C -0.036 4.036 20 H 0.088 0.912 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.102 4.102 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.088 4.088 28 C -0.087 4.087 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.144 0.856 51 H 0.078 0.922 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -29.082 8.344 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C 0.047 3.953 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.157 4.157 14 C -0.023 4.023 15 N -0.349 5.349 16 C 0.317 3.683 17 O -0.416 6.416 18 C -0.165 4.165 19 C -0.054 4.054 20 H 0.106 0.894 21 C -0.154 4.154 22 C -0.119 4.119 23 C -0.102 4.102 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.105 4.105 28 C -0.087 4.087 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.195 0.805 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.161 0.839 51 H 0.097 0.903 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.289 -28.848 9.056 30.322 hybrid contribution -1.004 -0.338 -1.081 1.513 sum -3.293 -29.186 7.975 30.435 Atomic orbital electron populations 1.21683 0.93551 1.00779 1.02751 1.22048 0.96350 0.96186 0.93857 1.20502 0.96002 0.87429 0.91409 1.42689 1.56587 1.11423 1.29135 1.19055 1.23458 0.85876 1.08855 0.89199 1.24665 1.00201 0.95794 0.98497 1.69701 1.48198 1.08952 1.31349 0.86581 0.81782 0.78905 0.81428 1.21074 1.21723 1.20380 1.22757 1.02903 0.91904 0.98181 1.22092 1.01211 0.98982 0.79969 1.48521 1.72766 1.06580 1.07028 1.20245 0.76075 0.85702 0.86269 1.90572 1.50308 1.86240 1.14486 1.21666 1.04258 0.91502 0.99066 1.20421 0.96129 0.93642 0.95244 0.89370 1.22420 0.95977 0.95449 1.01575 1.21084 0.94384 0.98900 0.97498 1.20610 0.94299 0.97359 0.97922 1.20529 0.95180 0.99835 0.98084 1.21033 0.99527 0.95397 0.97878 1.21146 0.94300 0.98652 1.00684 1.21271 0.96048 0.98252 0.94954 1.20373 0.95658 0.95609 0.97089 1.22256 1.01222 0.79307 0.97567 0.92290 0.91820 0.93388 0.95130 0.95185 0.80533 0.93054 0.89889 0.89915 0.91504 0.91685 0.88989 0.88585 0.90277 0.90568 0.90853 0.90376 0.86692 0.86287 0.86202 0.83852 0.90324 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.44 37.16 0.31 -1.57 16 2 C -0.08 -1.20 0.63 -152.22 -0.10 -1.29 16 3 C 0.17 3.19 5.25 -4.04 -0.02 3.17 16 4 N -0.75 -17.06 4.98 -59.91 -0.30 -17.36 16 5 C -0.24 -6.72 10.47 -15.06 -0.16 -6.88 16 6 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 8 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 9 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 13 C -0.12 -1.51 5.71 -24.76 -0.14 -1.65 16 14 C 0.10 1.02 6.08 -3.07 -0.02 1.00 16 15 N -0.61 -7.34 3.31 -170.52 -0.56 -7.91 16 16 C 0.53 6.43 7.62 -10.99 -0.08 6.35 16 17 O -0.54 -8.00 12.49 5.56 0.07 -7.93 16 18 C -0.13 -1.10 4.28 -27.89 -0.12 -1.22 16 19 C -0.04 -0.33 2.50 -90.74 -0.23 -0.55 16 20 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 21 C -0.12 -0.77 6.62 -25.18 -0.17 -0.93 16 22 C -0.08 -0.58 6.77 -26.71 -0.18 -0.76 16 23 C -0.10 -1.01 6.14 -104.21 -0.64 -1.65 16 24 C -0.12 -1.14 10.04 -39.54 -0.40 -1.54 16 25 C -0.12 -1.19 10.05 -39.63 -0.40 -1.59 16 26 C -0.13 -1.44 10.05 -39.63 -0.40 -1.83 16 27 C -0.09 -1.09 8.98 -39.54 -0.36 -1.44 16 28 C -0.09 -0.97 5.15 -104.21 -0.54 -1.51 16 29 C 0.12 1.59 5.84 -2.53 -0.01 1.57 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.01 6.65 -51.93 -0.35 0.67 16 32 H 0.05 0.63 7.80 -51.93 -0.40 0.22 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.36 7.94 4.09 -40.82 -0.17 7.78 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 38 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.08 0.39 7.88 -51.93 -0.41 -0.02 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.14 1.99 5.63 -52.49 -0.30 1.69 16 51 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 52 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -32.59 403.25 -11.17 -43.76 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.78 Total: 7.08 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.73 Total: -12.31 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.09 Total: -53.58 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.59 -11.17 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754709047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.086 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds