Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.38867 * 2 1 4 4 N 1.46496 * 109.47377 * 299.21835 * 3 2 1 5 5 C 1.36935 * 120.00406 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99761 * 0.02562 * 5 4 3 7 7 C 1.38813 * 120.00065 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99958 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46751 * 90.00709 * 9 7 5 11 11 H 1.48501 * 109.46902 * 210.00328 * 9 7 5 12 12 H 1.48493 * 109.47252 * 330.00398 * 9 7 5 13 13 C 1.54278 * 110.34322 * 237.76489 * 2 1 3 14 14 C 1.54390 * 104.96095 * 241.13085 * 13 2 1 15 15 N 1.48140 * 104.61789 * 23.86644 * 14 13 2 16 16 C 1.34776 * 127.83911 * 140.39157 * 15 14 13 17 17 O 1.21281 * 120.00304 * 179.97438 * 16 15 14 18 18 C 1.50706 * 119.99613 * 359.97438 * 16 15 14 19 19 C 1.53007 * 109.46981 * 185.60847 * 18 16 15 20 20 H 1.09005 * 110.26238 * 307.75837 * 19 18 16 21 21 C 1.54347 * 110.30315 * 69.82660 * 19 18 16 22 22 C 1.54497 * 102.32120 * 145.20645 * 21 19 18 23 23 C 1.51367 * 105.21434 * 333.77439 * 22 21 19 24 24 C 1.38497 * 130.38762 * 197.09772 * 23 22 21 25 25 C 1.38105 * 120.21890 * 180.02562 * 24 23 22 26 26 C 1.38254 * 119.93099 * 359.97438 * 25 24 23 27 27 C 1.38103 * 119.93632 * 359.97438 * 26 25 24 28 28 C 1.38213 * 109.76524 * 17.11942 * 23 22 21 29 29 C 1.48145 * 104.32497 * 320.41793 * 15 14 13 30 30 H 1.08996 * 109.47413 * 180.77754 * 1 2 3 31 31 H 1.08996 * 109.47452 * 300.78122 * 1 2 3 32 32 H 1.09002 * 109.47009 * 60.77955 * 1 2 3 33 33 H 1.09003 * 109.47521 * 59.22224 * 3 2 1 34 34 H 1.09005 * 109.47502 * 179.21839 * 3 2 1 35 35 H 0.97007 * 119.99918 * 0.02562 * 4 3 2 36 36 H 0.97008 * 120.00149 * 179.97438 * 8 7 5 37 37 H 1.09002 * 110.34392 * 0.02562 * 13 2 1 38 38 H 1.09009 * 110.34349 * 122.26186 * 13 2 1 39 39 H 1.09002 * 110.40497 * 142.65849 * 14 13 2 40 40 H 1.09004 * 110.40778 * 265.08046 * 14 13 2 41 41 H 1.08996 * 109.47310 * 305.60455 * 18 16 15 42 42 H 1.08993 * 109.47157 * 65.60719 * 18 16 15 43 43 H 1.08995 * 110.82570 * 263.49553 * 21 19 18 44 44 H 1.09002 * 110.82077 * 27.05052 * 21 19 18 45 45 H 1.08998 * 110.33799 * 214.80484 * 22 21 19 46 46 H 1.09005 * 110.21824 * 92.68074 * 22 21 19 47 47 H 1.08002 * 119.89367 * 0.05213 * 24 23 22 48 48 H 1.07995 * 120.03445 * 180.02562 * 25 24 23 49 49 H 1.07996 * 120.03020 * 180.02562 * 26 25 24 50 50 H 1.07994 * 119.88798 * 180.02562 * 27 26 25 51 51 H 1.09004 * 110.40258 * 280.79558 * 29 15 14 52 52 H 1.09000 * 110.40872 * 158.36777 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 7 1.6012 2.1268 -1.2054 5 6 1.9553 3.4315 -1.4236 6 1 2.5754 3.9497 -0.7071 7 6 1.5181 4.0876 -2.5661 8 7 0.7628 3.4558 -3.4394 9 14 2.0006 5.8676 -2.8633 10 1 3.2747 5.9145 -3.6247 11 1 0.9335 6.5463 -3.6416 12 1 2.1771 6.5568 -1.5599 13 6 2.0663 -0.7716 -1.2236 14 6 2.8801 -1.9423 -0.6312 15 7 2.3139 -2.1438 0.7228 16 6 2.0769 -3.3104 1.3546 17 8 1.6058 -3.3101 2.4722 18 6 2.3973 -4.6154 0.6723 19 6 1.9082 -5.7776 1.5390 20 1 2.2910 -5.6783 2.5547 21 6 0.3655 -5.8250 1.5503 22 6 0.0826 -7.3426 1.6098 23 6 1.2940 -7.9974 0.9813 24 6 1.4649 -9.2789 0.4846 25 6 2.6794 -9.6606 -0.0507 26 6 3.7285 -8.7610 -0.0919 27 6 3.5596 -7.4824 0.4020 28 6 2.3429 -7.0983 0.9406 29 6 2.0666 -0.7720 1.2246 30 1 -0.3634 -1.0275 0.0139 31 1 -0.3634 0.5259 0.8828 32 1 -0.3633 0.5017 -0.8969 33 1 1.6967 1.9580 0.8829 34 1 3.1528 1.4168 0.0140 35 1 1.0439 1.6614 -1.8488 36 1 0.4570 3.9144 -4.2377 37 1 1.2398 -1.1502 -1.8249 38 1 2.7096 -0.1289 -1.8247 39 1 2.7495 -2.8400 -1.2355 40 1 3.9354 -1.6771 -0.5663 41 1 1.8998 -4.6505 -0.2969 42 1 3.4750 -4.6963 0.5306 43 1 -0.0312 -5.3205 2.4313 44 1 -0.0422 -5.3908 0.6374 45 1 -0.8154 -7.5832 1.0407 46 1 -0.0271 -7.6651 2.6453 47 1 0.6456 -9.9820 0.5156 48 1 2.8093 -10.6605 -0.4376 49 1 4.6787 -9.0577 -0.5105 50 1 4.3795 -6.7802 0.3691 51 1 2.9949 -0.3241 1.5794 52 1 1.3222 -0.7869 2.0206 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754709050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = -7.563508 kcal Electronic energy + Delta-G solvation = -29581.021462 eV Core-core repulsion = 25737.728666 eV Total energy + Delta-G solvation = -3843.292796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.74987 -39.88805 -38.10979 -36.02263 -34.80505 -32.84762 -32.37800 -30.46591 -29.97088 -29.45644 -29.00836 -26.91904 -25.80784 -24.66916 -23.02652 -22.90002 -22.43704 -21.22199 -20.57554 -19.18245 -18.54137 -17.37514 -17.15015 -16.40436 -15.99544 -15.83688 -15.44465 -15.08276 -14.89176 -14.62641 -14.46808 -13.92808 -13.67163 -13.55837 -13.39275 -13.19701 -13.15738 -12.91390 -12.72787 -12.54564 -12.36230 -12.20289 -12.07215 -11.82729 -11.60441 -11.41632 -11.18153 -11.12919 -11.03227 -11.01095 -10.94499 -10.83087 -10.56133 -10.39348 -10.23174 -9.95177 -9.80369 -9.65388 -9.07787 -8.88955 -8.77169 -8.64710 -6.93157 -5.78415 -3.06519 1.08339 1.11510 2.63871 2.96082 3.42351 3.47999 3.49010 3.49407 4.10997 4.21561 4.51226 4.58436 4.63368 4.69502 4.74664 4.79479 4.82134 4.96005 5.00004 5.07587 5.17217 5.22093 5.24978 5.29118 5.34440 5.45809 5.49060 5.53995 5.58998 5.60474 5.66694 5.78309 5.79676 5.82609 5.92291 5.96411 5.96593 6.00254 6.04490 6.14435 6.21816 6.22689 6.23950 6.28124 6.40694 6.44581 6.59493 6.67328 6.72758 6.79464 6.83935 7.60573 7.69074 8.16767 8.40782 9.52354 10.09883 10.44961 11.44417 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.001941 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.021780 B =14419.076836 C =14746.097915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.124 4.124 14 C 0.099 3.901 15 N -0.621 5.621 16 C 0.533 3.467 17 O -0.545 6.545 18 C -0.128 4.128 19 C -0.033 4.033 20 H 0.097 0.903 21 C -0.111 4.111 22 C -0.084 4.084 23 C -0.093 4.093 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.106 4.106 28 C -0.090 4.090 29 C 0.115 3.885 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.119 0.881 51 H 0.071 0.929 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.485 -26.177 7.472 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.039 3.961 4 N -0.373 5.373 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.162 4.162 14 C -0.024 4.024 15 N -0.354 5.354 16 C 0.323 3.677 17 O -0.423 6.423 18 C -0.168 4.168 19 C -0.051 4.051 20 H 0.115 0.885 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.093 4.093 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.090 4.090 29 C -0.008 4.008 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.137 0.863 51 H 0.090 0.910 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.275 -26.112 8.150 27.549 hybrid contribution 0.224 0.885 -0.650 1.121 sum 3.499 -25.227 7.499 26.549 Atomic orbital electron populations 1.21769 0.93625 1.00400 1.02873 1.21663 0.96523 0.96140 0.93698 1.20659 0.95942 0.88405 0.91134 1.42357 1.61690 1.11354 1.21948 1.19223 1.25619 0.88300 1.03798 0.91233 1.24722 1.00541 0.98310 0.97408 1.69652 1.39824 1.36381 1.12370 0.86198 0.77488 0.84888 0.77664 1.21776 1.21821 1.20804 1.22645 1.00237 0.95879 0.97474 1.22512 0.97926 0.99268 0.82653 1.49044 1.62736 1.05735 1.17906 1.20197 0.77713 0.84071 0.85758 1.90684 1.45179 1.87056 1.19364 1.21718 1.03293 0.91535 1.00238 1.20464 0.96132 0.89301 0.99247 0.88521 1.22393 0.94221 0.94967 1.03290 1.21125 0.95520 0.94921 1.00558 1.20639 0.96368 0.93873 0.98453 1.20635 0.97644 0.95193 0.99297 1.21037 0.93170 0.99593 1.00160 1.21038 0.99032 0.93546 1.00382 1.20650 0.96437 0.96401 0.98891 1.20586 0.93867 0.96019 0.98534 1.22422 1.00904 0.80449 0.96984 0.93750 0.92842 0.91238 0.96136 0.96137 0.78050 0.93542 0.91036 0.88859 0.90652 0.90927 0.88832 0.88845 0.89585 0.91134 0.90703 0.90169 0.86358 0.86024 0.85949 0.86251 0.91044 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.06 37.16 0.30 -1.76 16 2 C -0.08 -1.22 0.73 -153.11 -0.11 -1.33 16 3 C 0.17 3.19 4.91 -4.05 -0.02 3.17 16 4 N -0.73 -17.53 4.93 -59.91 -0.30 -17.83 16 5 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 9 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.12 -1.75 5.78 -25.33 -0.15 -1.90 16 14 C 0.10 1.11 6.92 -2.41 -0.02 1.10 16 15 N -0.62 -7.94 3.32 -169.31 -0.56 -8.50 16 16 C 0.53 6.91 7.67 -10.98 -0.08 6.82 16 17 O -0.54 -8.73 15.39 5.56 0.09 -8.64 16 18 C -0.13 -1.23 4.12 -27.88 -0.11 -1.35 16 19 C -0.03 -0.33 2.47 -90.74 -0.22 -0.55 16 20 H 0.10 1.07 7.80 -51.93 -0.40 0.66 16 21 C -0.11 -1.08 5.87 -25.24 -0.15 -1.23 16 22 C -0.08 -0.71 6.77 -26.77 -0.18 -0.89 16 23 C -0.09 -0.87 6.14 -104.21 -0.64 -1.51 16 24 C -0.11 -0.91 10.04 -39.53 -0.40 -1.31 16 25 C -0.12 -0.94 10.05 -39.62 -0.40 -1.33 16 26 C -0.12 -0.95 10.05 -39.62 -0.40 -1.35 16 27 C -0.11 -0.91 9.68 -39.54 -0.38 -1.29 16 28 C -0.09 -0.86 5.61 -104.21 -0.58 -1.44 16 29 C 0.12 1.62 6.14 -2.41 -0.01 1.60 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.25 7.01 -51.93 -0.36 0.89 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 35 H 0.38 9.68 6.28 -40.82 -0.26 9.42 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.01 7.71 -51.93 -0.40 0.60 16 38 H 0.09 1.50 7.49 -51.92 -0.39 1.11 16 39 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.83 7.53 -51.93 -0.39 0.44 16 42 H 0.09 0.76 7.57 -51.93 -0.39 0.37 16 43 H 0.09 0.92 7.83 -51.93 -0.41 0.51 16 44 H 0.07 0.69 7.80 -51.93 -0.40 0.28 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 50 H 0.12 0.85 7.67 -52.49 -0.40 0.44 16 51 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 52 H 0.08 1.21 7.60 -51.93 -0.39 0.82 16 LS Contribution 408.63 15.07 6.16 6.16 Total: -1.00 -31.55 408.63 -11.48 -43.03 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.76 Total: 7.22 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.81 Total: -11.68 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.13 Total: -53.17 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.55 -11.48 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754709050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.468 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds