Wall clock time and date at job start Wed Apr 1 2020 01:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47473 * 2 1 4 4 C 1.53003 * 109.46833 * 119.99624 * 2 1 3 5 5 C 1.50703 * 109.47202 * 300.00156 * 4 2 1 6 6 H 1.08002 * 119.99685 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00216 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00069 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99806 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 90.00621 * 9 7 5 11 11 H 1.48503 * 109.47399 * 210.00111 * 9 7 5 12 12 H 1.48498 * 109.47295 * 330.00717 * 9 7 5 13 13 C 1.52996 * 109.47011 * 239.99250 * 2 1 3 14 14 N 1.46891 * 109.47214 * 60.00416 * 13 2 1 15 15 C 1.46895 * 111.00467 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47477 * 179.97438 * 15 14 13 17 17 N 1.46898 * 108.82756 * 60.00749 * 16 15 14 18 18 C 1.47015 * 110.99881 * 182.93688 * 17 16 15 19 19 C 1.53102 * 109.25746 * 177.60272 * 18 17 16 20 20 O 1.43022 * 109.25521 * 56.84371 * 19 18 17 21 21 C 1.43012 * 113.74065 * 301.33192 * 20 19 18 22 22 C 1.47012 * 111.00349 * 59.29484 * 17 16 15 23 23 C 1.52327 * 108.87125 * 301.47270 * 16 15 14 24 24 C 1.54256 * 112.59030 * 239.18105 * 23 16 15 25 25 S 1.83962 * 102.58244 * 24.52781 * 24 23 16 26 26 C 1.54264 * 108.86748 * 178.53083 * 16 15 14 27 27 H 1.08996 * 109.46960 * 300.00304 * 1 2 3 28 28 H 1.08991 * 109.46371 * 60.00371 * 1 2 3 29 29 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47232 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46579 * 299.99565 * 3 2 1 32 32 H 1.09001 * 109.47498 * 59.99466 * 3 2 1 33 33 H 1.08999 * 109.47344 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47340 * 60.00044 * 4 2 1 35 35 H 0.97000 * 119.99667 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46696 * 180.02562 * 13 2 1 37 37 H 1.09001 * 109.47410 * 300.00108 * 13 2 1 38 38 H 1.00912 * 111.00209 * 56.04274 * 14 13 2 39 39 H 1.09004 * 109.47575 * 300.00346 * 15 14 13 40 40 H 1.09011 * 109.46761 * 59.99901 * 15 14 13 41 41 H 1.09000 * 109.50279 * 297.53538 * 18 17 16 42 42 H 1.08996 * 109.51058 * 57.66713 * 18 17 16 43 43 H 1.08998 * 109.50639 * 296.91620 * 19 18 17 44 44 H 1.08996 * 109.50573 * 176.77606 * 19 18 17 45 45 H 1.09004 * 109.50438 * 298.73145 * 21 20 19 46 46 H 1.09001 * 109.50422 * 178.60930 * 21 20 19 47 47 H 1.08993 * 109.50816 * 302.32981 * 22 17 16 48 48 H 1.09004 * 109.50604 * 62.41819 * 22 17 16 49 49 H 1.09001 * 108.86630 * 359.97438 * 23 16 15 50 50 H 1.08995 * 108.87026 * 118.35694 * 23 16 15 51 51 H 1.08998 * 110.78860 * 142.79798 * 24 23 16 52 52 H 1.08994 * 110.78819 * 266.25479 * 24 23 16 53 53 H 1.08996 * 110.78601 * 214.56251 * 26 16 15 54 54 H 1.08994 * 110.79094 * 338.02103 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4798 6 1 0.9170 0.8676 2.3805 7 6 1.8710 -0.4814 3.7321 8 7 1.4330 0.1390 4.8058 9 14 2.9450 -2.0001 3.9036 10 1 4.3727 -1.5942 3.9486 11 1 2.5941 -2.7156 5.1567 12 1 2.7220 -2.8979 2.7419 13 6 2.0400 -0.7214 -1.2491 14 7 1.5505 -0.0291 -2.4486 15 6 2.0219 -0.6949 -3.6701 16 6 1.4924 0.0528 -4.8955 17 7 1.9894 1.4347 -4.8590 18 6 1.4514 2.2179 -5.9808 19 6 1.9455 3.6628 -5.8707 20 8 3.3754 3.6713 -5.8407 21 6 3.9331 2.9186 -4.7602 22 6 3.4592 1.4662 -4.8590 23 6 -0.0297 0.0751 -4.8393 24 6 -0.6778 -0.5939 -6.0689 25 16 0.6395 -1.7438 -6.6405 26 6 2.0256 -0.6355 -6.1689 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6768 1.9564 0.8899 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7489 1.2494 35 1 1.6673 -0.1924 5.6868 36 1 3.1300 -0.7218 -1.2488 37 1 1.6767 -1.7491 -1.2490 38 1 1.8199 0.9434 -2.4402 39 1 3.1118 -0.6945 -3.6868 40 1 1.6587 -1.7226 -3.6870 41 1 1.7928 1.7872 -6.9221 42 1 0.3621 2.2021 -5.9465 43 1 1.5596 4.1106 -4.9550 44 1 1.5961 4.2334 -6.7311 45 1 3.6050 3.3449 -3.8122 46 1 5.0211 2.9511 -4.8174 47 1 3.8354 0.9018 -4.0059 48 1 3.8327 1.0228 -5.7821 49 1 -0.3569 -0.4478 -3.9406 50 1 -0.3653 1.1105 -4.7836 51 1 -1.5740 -1.1443 -5.7824 52 1 -0.9056 0.1456 -6.8365 53 1 2.2180 0.0969 -6.9528 54 1 2.9232 -1.2135 -5.9492 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174298326.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:20 Heat of formation + Delta-G solvation = -53.044829 kcal Electronic energy + Delta-G solvation = -30166.788902 eV Core-core repulsion = 26456.967840 eV Total energy + Delta-G solvation = -3709.821063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43782 -39.28101 -38.41852 -35.34607 -34.30040 -33.91055 -32.16607 -30.77901 -29.63247 -28.09601 -27.87223 -27.38469 -25.67974 -25.38298 -23.94961 -23.24558 -21.82187 -20.03809 -19.34048 -18.84734 -18.26144 -17.40633 -17.04511 -16.78371 -16.40018 -16.24536 -15.93858 -15.77458 -15.70806 -15.43116 -15.35548 -14.93163 -14.89273 -14.44942 -14.17600 -14.07189 -13.73443 -13.53870 -13.37007 -13.03082 -12.96033 -12.89355 -12.74658 -12.69808 -12.62554 -12.40601 -12.20263 -12.15251 -12.03909 -12.02108 -11.77479 -11.67244 -11.43671 -11.31526 -10.96577 -10.88497 -10.77593 -10.68541 -10.63165 -9.45850 -9.13903 -8.71270 -8.20460 -6.20276 0.85804 1.31422 1.35542 1.38056 1.48734 2.40254 2.61713 2.96502 3.14800 3.20993 3.47984 3.74841 3.86429 3.93932 3.94271 4.06372 4.14752 4.18868 4.22827 4.23673 4.26651 4.29863 4.37855 4.47538 4.50609 4.54778 4.65531 4.70916 4.75793 4.80416 4.82233 4.84610 4.91366 4.93437 4.96987 5.00794 5.06084 5.08112 5.13706 5.23639 5.40360 5.42248 5.48336 5.57275 5.65440 5.80316 5.85568 5.90339 5.94082 6.19456 6.20206 6.44294 6.67965 6.87348 7.42203 8.95806 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.002986 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.436387 B = 9373.315339 C =10424.223474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.045 4.045 3 C -0.120 4.120 4 C -0.003 4.003 5 C -0.501 4.501 6 H 0.045 0.955 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.081 3.919 14 N -0.670 5.670 15 C 0.075 3.925 16 C 0.128 3.872 17 N -0.521 5.521 18 C 0.015 3.985 19 C 0.062 3.938 20 O -0.404 6.404 21 C 0.063 3.937 22 C 0.014 3.986 23 C -0.110 4.110 24 C -0.054 4.054 25 S -0.336 6.336 26 C -0.085 4.085 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.023 0.977 37 H 0.061 0.939 38 H 0.352 0.648 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.112 0.888 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.111 0.889 52 H 0.100 0.900 53 H 0.096 0.904 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 2.778 -28.402 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.046 4.046 3 C -0.177 4.177 4 C -0.041 4.041 5 C -0.539 4.539 6 H 0.063 0.937 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.764 3.236 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.174 1.174 13 C -0.048 4.048 14 N -0.303 5.303 15 C -0.056 4.056 16 C 0.037 3.963 17 N -0.246 5.246 18 C -0.113 4.113 19 C -0.015 4.015 20 O -0.322 6.322 21 C -0.013 4.013 22 C -0.114 4.114 23 C -0.148 4.148 24 C -0.202 4.202 25 S -0.110 6.110 26 C -0.235 4.235 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.173 0.827 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.130 0.870 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.106 0.894 50 H 0.112 0.888 51 H 0.130 0.870 52 H 0.119 0.881 53 H 0.115 0.885 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.512 1.662 -28.435 28.488 hybrid contribution 1.570 0.078 0.893 1.808 sum 2.082 1.740 -27.542 27.676 Atomic orbital electron populations 1.21485 0.94591 1.00187 1.00089 1.20312 0.96069 0.95276 0.92922 1.21651 0.99574 0.95904 1.00618 1.19601 0.95322 0.95522 0.93654 1.21439 1.30002 1.12026 0.90464 0.93704 1.25905 0.97658 1.00065 0.95816 1.70065 1.48425 1.42789 0.98426 0.85824 0.79385 0.80522 0.77878 1.19617 1.21565 1.17386 1.21833 0.96069 0.97621 0.89320 1.60363 1.63120 1.07035 0.99780 1.22087 0.96800 0.97838 0.88826 1.21603 0.95210 0.87148 0.92364 1.62506 1.07630 1.10779 1.43712 1.22902 1.01877 0.94446 0.92077 1.22789 0.80201 0.95289 1.03212 1.87968 1.21190 1.72465 1.50620 1.22718 0.99164 0.89360 0.90101 1.22863 0.88163 0.98492 1.01912 1.21944 0.91454 1.03280 0.98167 1.24283 0.98003 0.98317 0.99563 1.88192 1.06447 1.32065 1.84334 1.24823 0.98808 0.99478 1.00374 0.95630 0.91233 0.94560 0.93935 0.91569 0.94772 0.97224 0.97077 0.92953 0.95909 0.92024 0.82717 0.95038 0.90846 0.93835 0.88021 0.92266 0.86987 0.92414 0.87475 0.89565 0.93540 0.89417 0.88762 0.87017 0.88100 0.88542 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.88 8.06 71.98 0.58 -3.30 16 2 C -0.05 -1.64 0.60 -52.18 -0.03 -1.67 16 3 C -0.12 -4.17 7.89 71.98 0.57 -3.60 16 4 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 5 C -0.50 -27.97 8.20 25.60 0.21 -27.76 16 6 H 0.04 2.74 5.92 -2.91 -0.02 2.73 16 7 C 0.00 0.07 5.47 84.65 0.46 0.53 16 8 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 9 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 13 C 0.08 2.33 4.65 86.30 0.40 2.73 16 14 N -0.67 -15.13 4.87 -513.90 -2.50 -17.63 16 15 C 0.07 1.41 3.78 86.30 0.33 1.73 16 16 C 0.13 1.93 0.31 3.73 0.00 1.93 16 17 N -0.52 -7.43 3.65 -844.57 -3.08 -10.51 16 18 C 0.01 0.18 5.00 86.32 0.43 0.61 16 19 C 0.06 0.81 7.01 72.02 0.50 1.31 16 20 O -0.40 -7.07 10.83 -148.98 -1.61 -8.68 16 21 C 0.06 0.95 7.01 72.01 0.50 1.46 16 22 C 0.01 0.20 4.94 86.31 0.43 0.62 16 23 C -0.11 -1.63 4.82 30.80 0.15 -1.48 16 24 C -0.05 -0.72 7.46 72.41 0.54 -0.18 16 25 S -0.34 -6.15 23.26 -56.49 -1.31 -7.47 16 26 C -0.08 -1.28 4.98 72.41 0.36 -0.92 16 27 H 0.02 1.08 6.62 -2.39 -0.02 1.06 16 28 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.89 6.57 -2.38 -0.02 1.88 16 32 H 0.03 1.41 6.62 -2.39 -0.02 1.39 16 33 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 34 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.35 7.94 6.04 -89.68 -0.54 7.40 16 39 H 0.03 0.58 6.25 -2.38 -0.01 0.57 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.04 0.56 6.16 -2.39 -0.01 0.54 16 42 H 0.10 1.03 6.08 -2.39 -0.01 1.01 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 47 H 0.09 1.31 6.11 -2.39 -0.01 1.29 16 48 H 0.05 0.66 6.93 -2.38 -0.02 0.65 16 49 H 0.09 1.66 7.08 -2.39 -0.02 1.64 16 50 H 0.09 1.30 6.04 -2.39 -0.01 1.28 16 51 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.10 1.39 5.58 -2.39 -0.01 1.38 16 54 H 0.10 1.58 7.78 -2.39 -0.02 1.56 16 Total: -1.00 -64.81 398.12 -0.52 -65.33 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.28 Total: 20.14 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 5.53 Total: -28.04 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -5.28 Total: -87.85 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -1.61 Total: -8.68 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.31 Total: -7.47 kcal Total: -64.81 -0.52 -65.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174298326.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.284 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds