Wall clock time and date at job start Wed Apr 1 2020 01:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.53003 * 109.47004 * 240.00296 * 2 1 3 5 5 C 1.50704 * 109.47163 * 59.99872 * 4 2 1 6 6 H 1.07999 * 119.99776 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00008 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99932 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99921 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47038 * 59.99958 * 9 7 5 11 11 H 1.48493 * 109.47223 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47018 * 300.00032 * 9 7 5 13 13 C 1.52995 * 109.47490 * 120.00317 * 2 1 3 14 14 N 1.46903 * 109.47015 * 299.99986 * 13 2 1 15 15 C 1.46904 * 110.99833 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46774 * 179.97438 * 15 14 13 17 17 N 1.46902 * 108.73200 * 53.01899 * 16 15 14 18 18 C 1.47011 * 111.00207 * 182.65468 * 17 16 15 19 19 C 1.53093 * 109.25928 * 177.60495 * 18 17 16 20 20 O 1.43021 * 109.25823 * 56.84838 * 19 18 17 21 21 C 1.43007 * 113.73898 * 301.32897 * 20 19 18 22 22 C 1.47017 * 110.99952 * 59.01936 * 17 16 15 23 23 C 1.52947 * 108.88579 * 171.52538 * 16 15 14 24 24 C 1.55143 * 108.96195 * 90.69690 * 23 16 15 25 25 S 1.83986 * 100.91102 * 41.43887 * 24 23 16 26 26 C 1.53706 * 108.89212 * 294.50685 * 16 15 14 27 27 H 1.09004 * 109.47048 * 299.99485 * 1 2 3 28 28 H 1.08997 * 109.47659 * 59.99989 * 1 2 3 29 29 H 1.09007 * 109.47044 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47630 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47306 * 300.00557 * 3 2 1 32 32 H 1.09004 * 109.47307 * 59.99884 * 3 2 1 33 33 H 1.08997 * 109.47178 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.46953 * 299.99692 * 4 2 1 35 35 H 0.97002 * 119.99613 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47436 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47291 * 59.99803 * 13 2 1 38 38 H 1.00902 * 111.00153 * 303.94887 * 14 13 2 39 39 H 1.09000 * 109.47053 * 60.00032 * 15 14 13 40 40 H 1.08993 * 109.47355 * 300.00062 * 15 14 13 41 41 H 1.09000 * 109.50888 * 297.54005 * 18 17 16 42 42 H 1.09006 * 109.50661 * 57.67104 * 18 17 16 43 43 H 1.09001 * 109.51261 * 296.91457 * 19 18 17 44 44 H 1.09001 * 109.54335 * 176.80652 * 19 18 17 45 45 H 1.08993 * 109.51167 * 298.73747 * 21 20 19 46 46 H 1.08999 * 109.54331 * 178.62467 * 21 20 19 47 47 H 1.08998 * 109.50522 * 302.32779 * 22 17 16 48 48 H 1.08996 * 109.50652 * 62.46057 * 22 17 16 49 49 H 1.08998 * 109.60252 * 210.63059 * 23 16 15 50 50 H 1.09003 * 109.60290 * 330.76062 * 23 16 15 51 51 H 1.09007 * 111.13431 * 283.52695 * 24 23 16 52 52 H 1.09002 * 111.13419 * 159.34860 * 24 23 16 53 53 H 1.08997 * 110.34228 * 0.90456 * 26 16 15 54 54 H 1.09000 * 110.33731 * 123.16064 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0107 -2.4798 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4820 -3.7321 8 7 2.6254 -1.5519 -3.8528 9 14 1.2469 0.3982 -5.2572 10 1 1.7418 1.7983 -5.2577 11 1 1.7419 -0.3017 -6.4697 12 1 -0.2381 0.3981 -5.2566 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4486 15 6 2.0210 -0.6954 3.6702 16 6 1.4925 0.0532 4.8955 17 7 0.0351 0.1905 4.7721 18 6 -0.5186 0.9598 5.8957 19 6 -2.0270 1.1296 5.6967 20 8 -2.6344 -0.1592 5.5715 21 6 -2.1192 -0.9354 4.4865 22 6 -0.6116 -1.1261 4.6732 23 6 1.8084 -0.7640 6.1492 24 6 3.1900 -0.3253 6.7020 25 16 3.0851 1.4997 6.4934 26 6 2.1229 1.4545 4.9327 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 -0.7216 -1.2491 34 1 1.6766 -1.7488 -1.2493 35 1 2.8597 -1.8832 -4.7338 36 1 3.1300 -0.7217 1.2489 37 1 1.6767 -1.7489 1.2491 38 1 1.8198 0.9435 2.4402 39 1 3.1109 -0.6956 3.6872 40 1 1.6573 -1.7227 3.6868 41 1 -0.3322 0.4273 6.8284 42 1 -0.0440 1.9403 5.9346 43 1 -2.2120 1.7086 4.7919 44 1 -2.4517 1.6502 6.5551 45 1 -2.3066 -0.4165 3.5465 46 1 -2.6098 -1.9086 4.4691 47 1 -0.2048 -1.6683 3.8196 48 1 -0.4266 -1.6919 5.5863 49 1 1.0406 -0.5890 6.9028 50 1 1.8350 -1.8243 5.8975 51 1 4.0021 -0.7428 6.1066 52 1 3.2967 -0.5952 7.7526 53 1 2.7826 1.5961 4.0767 54 1 1.3462 2.2191 4.9442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174298340.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:23 Heat of formation + Delta-G solvation = -54.797537 kcal Electronic energy + Delta-G solvation = -30145.142745 eV Core-core repulsion = 26435.245680 eV Total energy + Delta-G solvation = -3709.897066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.37750 -39.26447 -38.39376 -35.40118 -34.24592 -33.76360 -32.19425 -30.67675 -29.04981 -28.05589 -27.84433 -27.35009 -26.08291 -24.71824 -24.48797 -23.40019 -21.98675 -19.87734 -19.37692 -18.30838 -18.17697 -17.66327 -17.08699 -16.63856 -16.34660 -16.16761 -16.08469 -15.88099 -15.54446 -15.34965 -15.16224 -15.12887 -14.55779 -14.41480 -14.06944 -13.88286 -13.61924 -13.54597 -13.31626 -13.17007 -12.96786 -12.86595 -12.73704 -12.72121 -12.67362 -12.40814 -12.32187 -12.20741 -12.12883 -12.01181 -11.85005 -11.71389 -11.36850 -11.32468 -10.90511 -10.81611 -10.67450 -10.56781 -10.48498 -9.20599 -9.11503 -8.75888 -8.12809 -6.19358 0.83879 1.29585 1.41448 1.43269 1.50522 2.44573 2.73237 3.02459 3.21266 3.23830 3.39089 3.62934 3.85381 3.94284 4.03412 4.06888 4.16079 4.19703 4.26764 4.29392 4.36184 4.37578 4.43372 4.45700 4.54440 4.58295 4.61663 4.69045 4.78192 4.80011 4.83601 4.85214 4.86388 4.94954 4.98699 5.02301 5.04371 5.12590 5.18373 5.26236 5.27361 5.54915 5.57865 5.62849 5.70922 5.91332 5.95542 5.99157 6.06339 6.19439 6.26953 6.40164 6.59870 6.95988 7.47931 8.99277 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.002878 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.294308 B = 9726.018782 C =10799.076938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.051 4.051 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.084 3.916 14 N -0.658 5.658 15 C 0.071 3.929 16 C 0.122 3.878 17 N -0.504 5.504 18 C 0.015 3.985 19 C 0.064 3.936 20 O -0.404 6.404 21 C 0.065 3.935 22 C 0.027 3.973 23 C -0.150 4.150 24 C -0.054 4.054 25 S -0.333 6.333 26 C -0.049 4.049 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.066 0.934 33 H -0.018 1.018 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.012 0.988 37 H 0.056 0.944 38 H 0.341 0.659 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.110 0.890 45 H 0.053 0.947 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.042 0.958 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.119 0.881 53 H 0.087 0.913 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 3.216 25.232 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.052 4.052 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.045 4.045 14 N -0.290 5.290 15 C -0.059 4.059 16 C 0.030 3.970 17 N -0.228 5.228 18 C -0.113 4.113 19 C -0.013 4.013 20 O -0.323 6.323 21 C -0.012 4.012 22 C -0.101 4.101 23 C -0.190 4.190 24 C -0.202 4.202 25 S -0.107 6.107 26 C -0.198 4.198 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.000 1.000 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.114 0.886 52 H 0.137 0.863 53 H 0.106 0.894 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.795 3.924 25.452 26.195 hybrid contribution 1.079 -0.984 -1.504 2.096 sum -3.716 2.940 23.948 24.412 Atomic orbital electron populations 1.21443 0.94163 0.99904 1.00334 1.20439 0.96305 0.95290 0.93125 1.21668 0.99218 0.95902 1.01027 1.18997 0.93784 0.94072 0.92799 1.21602 1.30132 1.11908 0.91530 0.91733 1.25887 0.95736 0.95883 1.02476 1.70097 1.38929 1.24894 1.24021 0.85677 0.78960 0.78817 0.78680 1.19359 1.21405 1.19351 1.21788 0.95413 0.97540 0.89767 1.60410 1.62945 1.06027 0.99641 1.22161 0.96568 0.98254 0.88918 1.21541 0.88793 0.92606 0.94072 1.62413 1.01726 1.16849 1.41806 1.22885 0.96119 0.99767 0.92503 1.22742 0.91312 0.84695 1.02552 1.87942 1.63301 1.29108 1.51994 1.22684 0.92635 0.96358 0.89524 1.22718 0.95243 0.90585 1.01537 1.23029 0.96670 1.01789 0.97537 1.24323 0.99869 0.90080 1.05939 1.88045 1.74409 1.14169 1.34109 1.24080 1.00452 0.99663 0.95583 0.91155 0.94895 0.95213 0.94733 0.93764 0.91482 1.00013 0.99796 0.93214 0.97005 0.92504 0.83884 0.95006 0.90558 0.93780 0.89050 0.92652 0.87214 0.92881 0.87717 0.89275 0.93937 0.89682 0.88771 0.88553 0.86258 0.89418 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.70 8.06 71.98 0.58 -3.12 16 2 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 3 C -0.12 -4.26 7.89 71.98 0.57 -3.69 16 4 C 0.04 2.09 4.04 29.85 0.12 2.22 16 5 C -0.51 -28.24 7.65 25.60 0.20 -28.05 16 6 H 0.06 3.41 5.68 -2.91 -0.02 3.39 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.66 4.65 86.30 0.40 3.07 16 14 N -0.66 -15.70 5.36 -513.90 -2.75 -18.45 16 15 C 0.07 1.37 3.67 86.30 0.32 1.68 16 16 C 0.12 1.92 0.33 3.75 0.00 1.92 16 17 N -0.50 -8.50 4.12 -844.46 -3.48 -11.98 16 18 C 0.01 0.23 5.02 86.31 0.43 0.66 16 19 C 0.06 1.03 7.01 72.01 0.50 1.54 16 20 O -0.40 -8.24 10.83 -148.98 -1.61 -9.86 16 21 C 0.06 1.20 7.01 72.02 0.50 1.70 16 22 C 0.03 0.47 4.94 86.32 0.43 0.90 16 23 C -0.15 -1.95 3.89 31.31 0.12 -1.83 16 24 C -0.05 -0.70 7.52 72.72 0.55 -0.15 16 25 S -0.33 -6.00 23.23 -56.49 -1.31 -7.31 16 26 C -0.05 -0.84 5.64 72.22 0.41 -0.43 16 27 H 0.07 2.23 7.60 -2.38 -0.02 2.22 16 28 H 0.03 1.31 6.62 -2.39 -0.02 1.29 16 29 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 32 H 0.07 1.91 6.57 -2.39 -0.02 1.89 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.34 8.01 5.26 -89.69 -0.47 7.54 16 39 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 1.47 6.41 -2.39 -0.02 1.45 16 41 H 0.04 0.69 6.10 -2.39 -0.01 0.68 16 42 H 0.09 1.34 6.02 -2.38 -0.01 1.33 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.09 1.71 6.26 -2.39 -0.01 1.70 16 48 H 0.04 0.68 6.97 -2.39 -0.02 0.67 16 49 H 0.08 1.16 5.58 -2.39 -0.01 1.15 16 50 H 0.09 1.10 7.55 -2.39 -0.02 1.09 16 51 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 52 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.09 1.61 6.71 -2.39 -0.02 1.59 16 54 H 0.11 1.92 5.99 -2.39 -0.01 1.90 16 Total: -1.00 -63.36 401.16 -0.88 -64.25 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.41 Total: 19.16 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 5.56 Total: -25.29 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -5.95 Total: -87.35 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.61 Total: -9.86 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.31 Total: -7.31 kcal Total: -63.36 -0.88 -64.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174298340.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.448 kcal (2) G-P(sol) polarization free energy of solvation -63.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds