Wall clock time and date at job start Wed Apr 1 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46847 * 247.68269 * 3 2 1 5 5 C 1.36942 * 120.00122 * 264.35337 * 4 3 2 6 6 H 1.08003 * 119.99852 * 196.60018 * 5 4 3 7 7 C 1.38813 * 119.99780 * 16.60314 * 5 4 3 8 8 N 1.31615 * 119.99945 * 22.37955 * 7 5 4 9 9 Si 1.86798 * 119.99755 * 202.38069 * 7 5 4 10 10 H 1.48502 * 109.47170 * 90.00190 * 9 7 5 11 11 H 1.48498 * 109.47081 * 209.99932 * 9 7 5 12 12 H 1.48504 * 109.47340 * 329.99789 * 9 7 5 13 13 C 1.46498 * 120.00304 * 84.35746 * 4 3 2 14 14 C 1.50703 * 109.47032 * 270.00260 * 13 4 3 15 15 O 1.21279 * 120.00011 * 359.97438 * 14 13 4 16 16 N 1.34780 * 119.99565 * 180.02562 * 14 13 4 17 17 C 1.46500 * 119.99577 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47103 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.47109 * 179.97438 * 18 17 16 20 20 C 1.38233 * 120.00216 * 269.73009 * 19 18 17 21 21 C 1.38234 * 119.99994 * 180.32271 * 20 19 18 22 22 C 1.38234 * 119.99771 * 359.95201 * 21 20 19 23 23 C 1.50698 * 119.99551 * 180.02562 * 22 21 20 24 24 C 1.53009 * 109.47228 * 240.01885 * 23 22 21 25 25 C 1.53001 * 109.47615 * 0.02562 * 23 22 21 26 26 C 1.53001 * 109.47269 * 120.02314 * 23 22 21 27 27 C 1.38231 * 120.00245 * 0.02562 * 22 21 20 28 28 C 1.38234 * 119.99509 * 90.00000 * 19 18 17 29 29 H 4.40632 * 5.51495 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47164 * 127.68542 * 3 2 1 31 31 H 1.08994 * 109.47600 * 7.68294 * 3 2 1 32 32 H 0.96999 * 119.99773 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47493 * 149.99678 * 13 4 3 34 34 H 1.09009 * 109.47041 * 29.99659 * 13 4 3 35 35 H 0.96993 * 120.00680 * 359.97438 * 16 14 13 36 36 H 1.09001 * 109.47237 * 59.99550 * 17 16 14 37 37 H 1.09005 * 109.47345 * 299.99985 * 17 16 14 38 38 H 1.08996 * 109.46582 * 60.00116 * 18 17 16 39 39 H 1.08992 * 109.47312 * 300.00100 * 18 17 16 40 40 H 1.07999 * 119.99584 * 0.27225 * 20 19 18 41 41 H 1.08002 * 119.99622 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.46667 * 60.00163 * 24 23 22 43 43 H 1.08999 * 109.47335 * 180.02562 * 24 23 22 44 44 H 1.08997 * 109.46666 * 300.00516 * 24 23 22 45 45 H 1.08999 * 109.47105 * 59.99722 * 25 23 22 46 46 H 1.08999 * 109.47560 * 180.02562 * 25 23 22 47 47 H 1.09004 * 109.47136 * 300.00361 * 25 23 22 48 48 H 1.08989 * 109.47334 * 59.99402 * 26 23 22 49 49 H 1.08999 * 109.47217 * 179.97438 * 26 23 22 50 50 H 1.09007 * 109.46852 * 299.99168 * 26 23 22 51 51 H 1.07999 * 119.99665 * 179.97438 * 27 22 21 52 52 H 1.08004 * 120.00576 * 359.72415 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.5254 1.2778 5 6 3.4716 1.8477 1.3909 6 1 4.0727 2.1822 2.2235 7 6 3.0413 2.7580 0.4354 8 7 1.9883 2.4857 -0.3059 9 14 3.9566 4.3695 0.2017 10 1 5.0265 4.1886 -0.8122 11 1 3.0084 5.4148 -0.2604 12 1 4.5625 4.7863 1.4918 13 6 3.2610 -0.3645 2.4346 14 6 1.9712 -0.3620 3.2141 15 8 1.0381 0.3166 2.8404 16 7 1.8552 -1.1132 4.3271 17 6 0.6016 -1.1104 5.0852 18 6 0.7341 -2.0399 6.2934 19 6 -0.5553 -2.0365 7.0736 20 6 -0.7429 -1.1239 8.0948 21 6 -1.9229 -1.1252 8.8148 22 6 -2.9157 -2.0385 8.5129 23 6 -4.2023 -2.0396 9.2975 24 6 -4.3838 -3.3980 9.9778 25 6 -4.1528 -0.9396 10.3599 26 6 -5.3768 -1.7821 8.3514 27 6 -2.7283 -2.9508 7.4914 28 6 -1.5481 -2.9497 6.7716 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.6290 -0.8132 31 1 3.0098 -1.0175 -0.1374 32 1 1.6878 3.1217 -0.9738 33 1 4.0724 -0.0162 3.0736 34 1 3.4767 -1.3767 2.0924 35 1 2.6015 -1.6557 4.6262 36 1 -0.2101 -1.4588 4.4465 37 1 0.3859 -0.0981 5.4271 38 1 1.5458 -1.6918 6.9321 39 1 0.9495 -3.0520 5.9512 40 1 0.0329 -0.4104 8.3305 41 1 -2.0692 -0.4125 9.6129 42 1 -3.5470 -3.5814 10.6518 43 1 -5.3146 -3.3989 10.5449 44 1 -4.4191 -4.1815 9.2208 45 1 -4.0236 0.0281 9.8752 46 1 -5.0832 -0.9407 10.9277 47 1 -3.3160 -1.1229 11.0340 48 1 -5.4122 -2.5655 7.5945 49 1 -6.3075 -1.7833 8.9188 50 1 -5.2476 -0.8143 7.8668 51 1 -3.5038 -3.6646 7.2559 52 1 -1.4016 -3.6627 5.9737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281238114.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:30 Heat of formation + Delta-G solvation = 39.698980 kcal Electronic energy + Delta-G solvation = -28908.661257 eV Core-core repulsion = 25067.417916 eV Total energy + Delta-G solvation = -3841.243341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.92385 -40.31026 -37.95546 -37.39468 -35.79339 -33.43426 -33.22623 -32.69205 -32.00683 -29.66664 -28.27078 -28.18754 -28.11063 -27.72649 -24.87241 -23.50079 -23.26543 -22.34258 -21.15030 -20.05539 -19.35841 -18.28847 -17.83019 -17.39565 -16.99738 -16.73031 -16.43388 -16.06251 -15.78109 -15.42149 -15.23776 -15.15431 -14.88437 -14.78533 -14.57307 -14.43899 -14.16106 -14.03378 -13.72567 -13.34168 -13.19780 -13.12701 -12.94824 -12.71084 -12.61867 -12.56680 -12.54351 -12.50717 -12.38940 -12.19855 -12.03997 -11.91149 -11.81121 -11.49920 -11.35131 -10.91549 -10.65137 -10.51466 -10.19430 -9.86815 -9.78128 -9.41727 -8.91313 -7.78585 -5.21280 0.41097 0.51985 1.49211 1.49487 1.58260 2.08640 2.37489 2.50370 2.59888 2.69498 2.85840 3.34473 3.66242 3.79519 3.84693 3.99377 4.01133 4.10066 4.14614 4.16152 4.18258 4.28577 4.38405 4.42192 4.57363 4.61005 4.62046 4.68435 4.76786 4.78428 4.79699 4.88431 4.94162 4.95251 4.99964 5.01756 5.03118 5.11669 5.18007 5.20721 5.26265 5.33272 5.36380 5.42597 5.59218 5.64933 5.72437 5.72526 5.72877 5.76008 6.13509 6.28020 6.88230 7.11789 7.50696 7.68942 7.87457 8.24311 9.22487 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.001953 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.451258 B =14336.943073 C =14445.399523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.111 4.111 3 C 0.268 3.732 4 N -0.574 5.574 5 C -0.265 4.265 6 H 0.079 0.921 7 C -0.051 4.051 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.278 1.278 11 H -0.308 1.308 12 H -0.271 1.271 13 C 0.123 3.877 14 C 0.463 3.537 15 O -0.561 6.561 16 N -0.728 5.728 17 C 0.135 3.865 18 C -0.074 4.074 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.131 4.131 22 C -0.079 4.079 23 C -0.031 4.031 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.123 4.123 28 C -0.122 4.122 29 H 0.201 0.799 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.413 0.587 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.132 0.868 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 -15.912 21.963 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.113 4.113 3 C 0.143 3.857 4 N -0.292 5.292 5 C -0.395 4.395 6 H 0.097 0.903 7 C -0.248 4.248 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.235 1.235 12 H -0.196 1.196 13 C -0.007 4.007 14 C 0.247 3.753 15 O -0.436 6.436 16 N -0.385 5.385 17 C 0.010 3.990 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.079 4.079 23 C -0.031 4.031 24 C -0.192 4.192 25 C -0.201 4.201 26 C -0.196 4.196 27 C -0.141 4.141 28 C -0.140 4.140 29 H 0.218 0.782 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.063 0.937 51 H 0.150 0.850 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.525 -15.293 21.547 27.473 hybrid contribution -0.224 1.233 -0.285 1.285 sum -7.749 -14.060 21.263 26.643 Atomic orbital electron populations 1.24593 0.96152 1.07797 1.04203 1.24560 0.96013 0.94021 0.96737 1.17950 0.82338 0.96408 0.89039 1.44340 1.72826 1.06564 1.05432 1.19501 1.25283 0.84985 1.09715 0.90312 1.25689 0.97050 1.00930 1.01103 1.70382 1.22745 1.36761 1.25581 0.85307 0.77710 0.79415 0.78152 1.20482 1.23541 1.19628 1.21356 0.92966 0.97102 0.89314 1.23399 0.92571 0.78381 0.80904 1.90754 1.42209 1.42059 1.68621 1.46150 1.16525 1.48772 1.27090 1.21042 0.86872 0.98659 0.92405 1.20674 0.95373 1.00614 0.94435 1.19835 0.96355 0.96672 0.96896 1.21283 0.98325 0.98564 0.96014 1.21386 0.93389 0.99419 1.00646 1.20070 0.95897 0.95521 0.96419 1.19559 0.91535 0.97201 0.94813 1.21861 1.02140 0.94817 1.00357 1.21959 1.02611 0.97522 0.97964 1.21895 0.97318 1.01377 0.99007 1.21154 0.97566 0.99409 0.95968 1.21258 0.93695 0.99214 0.99853 0.78171 0.90939 0.90765 0.94789 0.88112 0.87399 0.74994 0.94484 0.94757 0.88847 0.88648 0.85414 0.84558 0.92772 0.91190 0.92397 0.92811 0.91274 0.92010 0.92472 0.91031 0.93665 0.85027 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.13 18.78 74.32 1.40 -14.73 16 2 C -0.11 -5.88 10.03 31.12 0.31 -5.57 16 3 C 0.27 13.04 5.45 84.57 0.46 13.50 16 4 N -0.57 -27.95 2.09 -716.91 -1.50 -29.45 16 5 C -0.26 -14.42 9.66 84.03 0.81 -13.61 16 6 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 7 C -0.05 -2.92 4.85 84.86 0.41 -2.51 16 8 N -0.91 -55.49 9.49 21.65 0.21 -55.28 16 9 Si 0.97 45.93 29.61 68.60 2.03 47.96 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.12 4.54 6.18 85.63 0.53 5.07 16 14 C 0.46 18.66 7.81 87.66 0.68 19.35 16 15 O -0.56 -30.17 14.44 -3.03 -0.04 -30.22 16 16 N -0.73 -20.77 5.56 -463.05 -2.57 -23.34 16 17 C 0.13 3.83 5.66 86.38 0.49 4.31 16 18 C -0.07 -1.38 5.46 29.85 0.16 -1.22 16 19 C -0.10 -2.03 5.13 -19.86 -0.10 -2.13 16 20 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 21 C -0.13 -2.51 8.98 22.27 0.20 -2.31 16 22 C -0.08 -1.44 4.76 -19.87 -0.09 -1.54 16 23 C -0.03 -0.44 0.85 -52.92 -0.05 -0.48 16 24 C -0.13 -1.55 8.29 71.99 0.60 -0.95 16 25 C -0.14 -1.76 7.13 71.98 0.51 -1.24 16 26 C -0.14 -1.93 8.29 71.98 0.60 -1.34 16 27 C -0.12 -2.31 8.71 22.27 0.19 -2.12 16 28 C -0.12 -2.47 9.70 22.27 0.22 -2.25 16 29 H 0.20 9.25 7.80 -4.41 -0.03 9.21 16 30 H 0.07 3.88 6.41 -2.39 -0.02 3.86 16 31 H 0.07 2.95 7.97 -2.39 -0.02 2.93 16 32 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.10 3.23 8.02 -2.39 -0.02 3.21 16 34 H 0.11 3.12 7.95 -2.38 -0.02 3.10 16 35 H 0.41 7.97 8.47 -92.71 -0.79 7.18 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 39 H 0.10 1.45 8.09 -2.39 -0.02 1.43 16 40 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.14 2.17 5.90 -2.91 -0.02 2.16 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.66 7.39 -2.39 -0.02 0.64 16 45 H 0.05 0.72 7.51 -2.39 -0.02 0.70 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.71 7.51 -2.39 -0.02 0.70 16 48 H 0.06 0.79 7.39 -2.39 -0.02 0.77 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 51 H 0.13 2.03 7.10 -2.91 -0.02 2.01 16 52 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -78.71 422.87 5.77 -72.94 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.10 Total: 29.48 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 7.55 Total: -12.10 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.87 Total: -108.07 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.04 Total: -30.22 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -78.71 5.77 -72.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281238114.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.635 kcal (2) G-P(sol) polarization free energy of solvation -78.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds