Wall clock time and date at job start Wed Apr 1 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 C 1.53005 * 109.46980 * 119.99904 * 2 1 3 5 5 H 1.09000 * 109.47310 * 305.92239 * 4 2 1 6 6 C 1.53005 * 109.46721 * 65.91874 * 4 2 1 7 7 N 1.46500 * 109.47408 * 290.93362 * 6 4 2 8 8 C 1.34772 * 120.00092 * 173.76922 * 7 6 4 9 9 O 1.21589 * 119.99821 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00053 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99823 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47059 * 180.02562 * 11 10 8 13 13 O 1.21292 * 119.99516 * 0.02562 * 12 11 10 14 14 N 1.34768 * 120.00217 * 180.02562 * 12 11 10 15 15 C 1.37102 * 120.00344 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99341 * 0.02562 * 15 14 12 17 17 C 1.38947 * 120.00185 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99980 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46867 * 60.00096 * 19 17 15 21 21 H 1.48496 * 109.47205 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47051 * 300.00529 * 19 17 15 23 23 N 1.46892 * 109.47251 * 185.91972 * 4 2 1 24 24 C 1.47019 * 111.00049 * 294.08444 * 23 4 2 25 25 C 1.53100 * 109.25617 * 177.60569 * 24 23 4 26 26 O 1.43011 * 109.25868 * 56.85498 * 25 24 23 27 27 C 1.43017 * 113.73490 * 301.32503 * 26 25 24 28 28 C 1.47014 * 111.00067 * 170.45081 * 23 4 2 29 29 H 1.08997 * 109.47325 * 292.21052 * 1 2 3 30 30 H 1.08997 * 109.47425 * 172.20379 * 1 2 3 31 31 H 1.09006 * 109.46724 * 52.20199 * 1 2 3 32 32 H 1.09001 * 109.47052 * 240.00032 * 2 1 3 33 33 H 1.09001 * 109.47052 * 60.00031 * 3 2 1 34 34 H 1.08998 * 109.46827 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47139 * 299.99880 * 3 2 1 36 36 H 1.09003 * 109.47101 * 50.93865 * 6 4 2 37 37 H 1.09000 * 109.46555 * 170.93213 * 6 4 2 38 38 H 0.97003 * 119.99726 * 353.77272 * 7 6 4 39 39 H 0.96998 * 119.99742 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47374 * 300.00464 * 11 10 8 41 41 H 1.09003 * 109.47263 * 60.00837 * 11 10 8 42 42 H 0.96996 * 120.00132 * 0.02562 * 14 12 11 43 43 H 0.96997 * 119.99504 * 179.97438 * 18 17 15 44 44 H 1.08992 * 109.50820 * 297.54493 * 24 23 4 45 45 H 1.08999 * 109.50289 * 57.67480 * 24 23 4 46 46 H 1.09003 * 109.50782 * 296.91475 * 25 24 23 47 47 H 1.09008 * 109.53581 * 176.80785 * 25 24 23 48 48 H 1.08996 * 109.50659 * 298.73510 * 27 26 25 49 49 H 1.09003 * 109.53921 * 178.63020 * 27 26 25 50 50 H 1.08993 * 109.50955 * 302.32663 * 28 23 4 51 51 H 1.09004 * 109.50506 * 62.41665 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5926 -0.2723 2.1361 6 6 1.6549 -2.2003 1.1771 7 7 0.2033 -2.3347 1.3216 8 6 -0.3810 -3.5390 1.1639 9 8 0.2968 -4.5139 0.9021 10 7 -1.7164 -3.6627 1.2973 11 6 -2.3513 -4.9718 1.1264 12 6 -3.8392 -4.8382 1.3253 13 8 -4.3217 -3.7558 1.5839 14 7 -4.6337 -5.9214 1.2159 15 6 -5.9872 -5.8000 1.3974 16 1 -6.4168 -4.8362 1.6276 17 6 -6.8063 -6.9166 1.2841 18 7 -6.2836 -8.0892 1.0035 19 14 -8.6506 -6.7510 1.5306 20 1 -9.2001 -5.8000 0.5311 21 1 -9.2942 -8.0781 1.3580 22 1 -8.9234 -6.2432 2.8992 23 7 3.5019 -0.5988 1.3229 24 6 4.1472 -1.3162 0.2137 25 6 5.6625 -1.1132 0.2947 26 8 6.1303 -1.5569 1.5713 27 6 5.5231 -0.8787 2.6744 28 6 4.0063 -1.0793 2.6175 29 1 -0.3634 0.3885 0.9514 30 1 -0.3634 -1.0181 -0.1394 31 1 -0.3633 0.6299 -0.8121 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.9638 -2.6096 0.2152 37 1 2.1520 -2.7447 1.9800 38 1 -0.3373 -1.5570 1.5307 39 1 -2.2570 -2.8850 1.5065 40 1 -2.1514 -5.3443 0.1218 41 1 -1.9477 -5.6700 1.8598 42 1 -4.2478 -6.7870 1.0095 43 1 -6.8554 -8.8687 0.9247 44 1 3.9180 -2.3793 0.2855 45 1 3.7781 -0.9270 -0.7351 46 1 5.8953 -0.0557 0.1691 47 1 6.1501 -1.6892 -0.4919 48 1 5.7519 0.1855 2.6180 49 1 5.9092 -1.2850 3.6093 50 1 3.5344 -0.5172 3.4233 51 1 3.7743 -2.1386 2.7281 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343890514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:58 Heat of formation + Delta-G solvation = -125.749065 kcal Electronic energy + Delta-G solvation = -30659.475183 eV Core-core repulsion = 26400.208214 eV Total energy + Delta-G solvation = -4259.266969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63351 -40.81645 -40.00660 -38.58448 -36.25776 -35.54178 -35.27956 -34.68872 -33.37266 -32.13122 -30.45394 -29.04919 -27.95536 -27.02669 -26.11227 -25.08291 -23.93799 -22.19718 -21.42501 -21.37447 -20.61598 -20.11372 -19.45580 -17.88721 -17.49975 -17.36769 -17.20343 -16.94853 -16.49900 -16.23548 -16.12520 -15.98028 -15.89713 -15.72145 -15.26794 -15.25957 -15.03168 -14.75434 -14.48364 -13.99514 -13.90459 -13.62767 -13.53823 -13.41757 -13.15475 -12.90563 -12.88739 -12.82537 -12.47105 -12.42616 -12.23496 -12.13966 -11.86122 -11.77895 -11.60790 -11.56252 -11.44337 -11.30080 -10.63596 -10.56298 -10.42871 -10.10591 -9.81088 -9.40700 -8.50964 -6.01383 1.38063 1.42052 1.50886 1.57191 1.89178 2.06933 2.28239 2.65963 2.97488 3.05965 3.16133 3.32668 3.51673 3.72773 3.94383 4.00092 4.07980 4.15963 4.19701 4.26581 4.31481 4.35725 4.39517 4.42056 4.44134 4.49484 4.60748 4.72595 4.79046 4.80076 4.85857 4.89491 4.93359 5.03717 5.06775 5.17153 5.27552 5.31555 5.34691 5.38430 5.43900 5.57811 5.86510 5.88848 5.92066 5.92424 6.21363 6.47543 6.97171 7.03009 7.41425 7.49221 7.93718 8.65661 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.001867 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.592958 B =14990.280418 C =15650.926037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 C -0.129 4.129 4 C 0.087 3.913 5 H 0.102 0.898 6 C 0.115 3.885 7 N -0.725 5.725 8 C 0.702 3.298 9 O -0.634 6.634 10 N -0.722 5.722 11 C 0.142 3.858 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.559 5.559 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.270 1.270 23 N -0.510 5.510 24 C 0.008 3.992 25 C 0.064 3.936 26 O -0.409 6.409 27 C 0.064 3.936 28 C 0.009 3.991 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.410 0.590 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.032 0.968 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.108 0.892 50 H 0.103 0.897 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.044 18.189 -0.178 28.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.100 4.100 3 C -0.186 4.186 4 C -0.022 4.022 5 H 0.120 0.880 6 C -0.011 4.011 7 N -0.385 5.385 8 C 0.401 3.599 9 O -0.516 6.516 10 N -0.380 5.380 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.466 4.466 16 H 0.105 0.895 17 C -0.213 4.213 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.195 1.195 23 N -0.233 5.233 24 C -0.120 4.120 25 C -0.012 4.012 26 O -0.328 6.328 27 C -0.012 4.012 28 C -0.119 4.119 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.050 0.950 45 H 0.117 0.883 46 H 0.087 0.913 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.121 0.879 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.527 18.187 -0.280 28.954 hybrid contribution -1.689 -1.003 0.164 1.971 sum 20.838 17.183 -0.116 27.010 Atomic orbital electron populations 1.22203 0.95083 1.02152 1.02928 1.21097 0.95406 0.97383 0.96110 1.21630 1.01767 0.93863 1.01340 1.22053 0.88090 0.91231 1.00828 0.87998 1.21936 0.79058 0.99091 1.01033 1.45263 1.08693 1.08448 1.76126 1.16006 0.81546 0.84134 0.78171 1.90886 1.63815 1.38948 1.57956 1.44661 1.05673 1.11680 1.75980 1.20578 0.88987 0.85723 1.03422 1.20375 0.88945 0.84750 0.83818 1.90464 1.76645 1.27871 1.56101 1.41834 1.07084 1.09600 1.60947 1.19706 0.82684 0.96529 1.47724 0.89463 1.26152 1.05155 0.94055 0.95899 1.69679 1.38526 0.99924 1.47483 0.84915 0.76186 0.77759 0.79049 1.19434 1.19704 1.19458 1.62614 1.03535 1.54640 1.02538 1.22928 0.96151 0.96742 0.96200 1.22761 0.92161 1.00859 0.85461 1.87977 1.65544 1.63942 1.15378 1.22765 0.90585 0.97899 0.89998 1.22938 0.97318 0.99097 0.92543 0.91282 0.92758 0.91782 0.91737 0.92643 0.91667 0.93052 0.92551 0.93240 0.74755 0.75177 0.89150 0.89201 0.76730 0.91076 0.95005 0.88269 0.91294 0.87578 0.91317 0.87399 0.87922 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 7.64 71.98 0.55 -1.76 16 2 C -0.08 -1.05 2.11 -10.79 -0.02 -1.08 16 3 C -0.13 -1.43 8.96 71.98 0.65 -0.78 16 4 C 0.09 1.21 1.57 44.92 0.07 1.28 16 5 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 6 C 0.11 2.34 4.08 86.38 0.35 2.70 16 7 N -0.73 -16.45 3.73 -478.53 -1.78 -18.23 16 8 C 0.70 22.42 8.57 179.06 1.53 23.95 16 9 O -0.63 -25.09 16.33 -4.00 -0.07 -25.16 16 10 N -0.72 -23.77 5.53 -482.30 -2.67 -26.44 16 11 C 0.14 5.24 6.15 85.64 0.53 5.77 16 12 C 0.43 19.96 7.85 87.66 0.69 20.65 16 13 O -0.62 -31.75 15.24 -3.07 -0.05 -31.80 16 14 N -0.56 -28.07 5.29 -306.99 -1.62 -29.69 16 15 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 18 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 19 Si 1.00 41.57 29.55 68.60 2.03 43.60 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 N -0.51 -6.74 3.66 -869.97 -3.19 -9.92 16 24 C 0.01 0.11 4.82 86.31 0.42 0.53 16 25 C 0.06 0.84 7.01 72.02 0.50 1.35 16 26 O -0.41 -7.16 10.83 -148.98 -1.61 -8.77 16 27 C 0.06 0.81 7.01 72.02 0.50 1.31 16 28 C 0.01 0.12 5.39 86.32 0.47 0.58 16 29 H 0.07 0.79 7.73 -2.39 -0.02 0.78 16 30 H 0.05 0.97 5.70 -2.39 -0.01 0.95 16 31 H 0.06 0.87 8.13 -2.38 -0.02 0.85 16 32 H 0.06 0.94 6.76 -2.39 -0.02 0.93 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.75 7.45 -2.39 -0.02 0.73 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 1.34 6.88 -2.39 -0.02 1.33 16 37 H 0.05 1.15 6.39 -2.39 -0.02 1.14 16 38 H 0.41 7.39 5.93 -92.71 -0.55 6.84 16 39 H 0.41 12.97 7.45 -92.71 -0.69 12.28 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 43 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.03 0.59 6.57 -2.39 -0.02 0.57 16 45 H 0.10 1.22 6.50 -2.39 -0.02 1.20 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 51 H 0.03 0.55 6.54 -2.39 -0.02 0.54 16 Total: -1.00 -68.45 397.52 -2.16 -70.61 By element: Atomic # 1 Polarization: 48.57 SS G_CDS: -1.00 Total: 47.57 kcal Atomic # 6 Polarization: 29.15 SS G_CDS: 7.52 Total: 36.66 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -8.98 Total: -132.71 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -1.72 Total: -65.73 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -68.45 -2.16 -70.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343890514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.143 kcal (2) G-P(sol) polarization free energy of solvation -68.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds