Wall clock time and date at job start Wed Apr 1 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46798 * 2 1 4 4 C 1.53000 * 109.46656 * 119.99497 * 2 1 3 5 5 H 1.08997 * 109.47670 * 305.38094 * 4 2 1 6 6 C 1.53008 * 109.46709 * 185.37829 * 4 2 1 7 7 N 1.46505 * 109.46968 * 184.21146 * 6 4 2 8 8 C 1.34777 * 119.99758 * 184.73370 * 7 6 4 9 9 O 1.21585 * 119.99981 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99602 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99758 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47334 * 179.97438 * 11 10 8 13 13 O 1.21295 * 119.99766 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00133 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99821 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00181 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99926 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99905 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00085 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47111 * 89.99817 * 19 17 15 21 21 H 1.48500 * 109.47400 * 210.00010 * 19 17 15 22 22 H 1.48497 * 109.47344 * 330.00411 * 19 17 15 23 23 N 1.46897 * 109.46902 * 65.38503 * 4 2 1 24 24 C 1.47009 * 111.00378 * 40.22310 * 23 4 2 25 25 C 1.53099 * 109.26003 * 177.61067 * 24 23 4 26 26 O 1.43015 * 109.25901 * 56.84416 * 25 24 23 27 27 C 1.43017 * 113.74087 * 301.33298 * 26 25 24 28 28 C 1.47011 * 111.00034 * 276.58464 * 23 4 2 29 29 H 1.08996 * 109.47372 * 281.87226 * 1 2 3 30 30 H 1.09006 * 109.47029 * 41.87106 * 1 2 3 31 31 H 1.09000 * 109.47037 * 161.87052 * 1 2 3 32 32 H 1.08996 * 109.47415 * 239.99938 * 2 1 3 33 33 H 1.09005 * 109.46925 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46986 * 299.99180 * 3 2 1 35 35 H 1.08996 * 109.47188 * 59.99798 * 3 2 1 36 36 H 1.09001 * 109.46902 * 304.21372 * 6 4 2 37 37 H 1.08995 * 109.47029 * 64.21085 * 6 4 2 38 38 H 0.97005 * 119.99821 * 4.73141 * 7 6 4 39 39 H 0.97001 * 120.00500 * 359.97438 * 10 8 7 40 40 H 1.08992 * 109.47230 * 299.99750 * 11 10 8 41 41 H 1.09007 * 109.46851 * 60.00395 * 11 10 8 42 42 H 0.96997 * 120.00540 * 0.02562 * 14 12 11 43 43 H 0.96997 * 119.99934 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.50830 * 297.54071 * 24 23 4 45 45 H 1.08999 * 109.50966 * 57.67449 * 24 23 4 46 46 H 1.09004 * 109.50531 * 296.91194 * 25 24 23 47 47 H 1.09004 * 109.50756 * 176.78138 * 25 24 23 48 48 H 1.08997 * 109.50419 * 298.73542 * 27 26 25 49 49 H 1.09000 * 109.54197 * 178.62703 * 27 26 25 50 50 H 1.09004 * 109.50959 * 302.33232 * 28 23 4 51 51 H 1.09005 * 109.50415 * 62.45838 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6001 -0.2660 2.1367 6 6 3.5640 -0.6051 1.3188 7 7 4.0613 -1.3796 2.4587 8 6 5.3709 -1.3472 2.7754 9 8 6.1397 -0.6757 2.1149 10 7 5.8284 -2.0600 3.8237 11 6 7.2520 -2.0253 4.1677 12 6 7.5000 -2.9001 5.3695 13 8 6.5782 -3.4945 5.8875 14 7 8.7458 -3.0220 5.8688 15 6 8.9714 -3.8182 6.9618 16 1 8.1507 -4.3475 7.4230 17 6 10.2558 -3.9435 7.4769 18 7 11.2544 -3.2991 6.9161 19 14 10.5631 -5.0278 8.9666 20 1 10.8761 -6.4084 8.5179 21 1 11.7077 -4.4884 9.7439 22 1 9.3497 -5.0488 9.8224 23 7 1.6592 -2.1385 1.1862 24 6 1.8159 -2.6660 -0.1771 25 6 1.4665 -4.1565 -0.1851 26 8 0.1379 -4.3323 0.3141 27 6 -0.0501 -3.8303 1.6400 28 6 0.2840 -2.3366 1.6665 29 1 -0.3634 0.2114 1.0056 30 1 -0.3633 0.7653 -0.6860 31 1 -0.3633 -0.9766 -0.3198 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 4.0002 -0.9927 0.3981 37 1 3.8435 0.4413 1.4408 38 1 3.4479 -1.9156 2.9854 39 1 5.2151 -2.5961 4.3505 40 1 7.8385 -2.3907 3.3248 41 1 7.5453 -1.0010 4.3977 42 1 9.4829 -2.5464 5.4549 43 1 12.1510 -3.3868 7.2754 44 1 1.1480 -2.1320 -0.8530 45 1 2.8474 -2.5322 -0.5028 46 1 2.1682 -4.6983 0.4491 47 1 1.5260 -4.5388 -1.2042 48 1 0.6075 -4.3626 2.3272 49 1 -1.0873 -3.9768 1.9417 50 1 0.1972 -1.9622 2.6865 51 1 -0.4085 -1.7972 1.0201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343890515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:00 Heat of formation + Delta-G solvation = -127.394945 kcal Electronic energy + Delta-G solvation = -30751.363786 eV Core-core repulsion = 26492.025446 eV Total energy + Delta-G solvation = -4259.338340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50900 -40.88804 -39.95070 -38.50672 -36.23444 -35.35492 -35.20944 -34.50417 -33.35638 -32.17753 -30.66138 -28.93204 -28.22095 -26.90532 -26.07755 -25.12270 -23.64833 -22.03157 -21.56439 -21.33960 -20.38530 -20.07859 -19.37877 -17.91888 -17.54813 -17.38171 -16.92744 -16.82867 -16.53342 -16.33778 -16.04288 -15.92792 -15.89929 -15.73671 -15.62769 -15.27283 -15.03443 -14.60309 -13.92745 -13.85820 -13.74318 -13.53363 -13.52000 -13.44461 -13.19840 -13.03299 -12.89739 -12.73289 -12.66752 -12.44549 -12.20125 -12.11997 -12.04792 -11.62892 -11.55813 -11.49548 -11.41849 -11.32323 -10.60820 -10.53680 -10.35902 -10.08743 -9.71307 -9.17900 -8.49828 -5.99956 1.37326 1.43164 1.55461 1.68864 1.91582 2.19085 2.29826 2.71863 2.98844 3.09441 3.17423 3.38467 3.67021 3.77246 3.96801 4.00036 4.10676 4.19332 4.23517 4.24069 4.31696 4.37842 4.45395 4.48592 4.49631 4.60670 4.63458 4.69452 4.74764 4.77628 4.84982 4.89490 4.91921 4.97486 5.03114 5.05962 5.23786 5.35510 5.37512 5.38743 5.40615 5.58436 5.93219 5.98594 6.00747 6.05679 6.21325 6.49696 7.04776 7.11771 7.44898 7.61071 7.96164 8.67186 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.002055 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.850018 B =13622.402415 C =14706.010998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.149 4.149 4 C 0.086 3.914 5 H 0.097 0.903 6 C 0.153 3.847 7 N -0.719 5.719 8 C 0.702 3.298 9 O -0.637 6.637 10 N -0.725 5.725 11 C 0.143 3.857 12 C 0.435 3.565 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 N -0.535 5.535 24 C 0.017 3.983 25 C 0.061 3.939 26 O -0.403 6.403 27 C 0.058 3.942 28 C 0.002 3.998 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.410 0.590 39 H 0.409 0.591 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.108 0.892 48 H 0.050 0.950 49 H 0.111 0.889 50 H 0.095 0.905 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.473 6.045 -15.378 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.207 4.207 4 C -0.023 4.023 5 H 0.115 0.885 6 C 0.028 3.972 7 N -0.375 5.375 8 C 0.402 3.598 9 O -0.519 6.519 10 N -0.383 5.383 11 C 0.014 3.986 12 C 0.222 3.778 13 O -0.511 6.511 14 N -0.196 5.196 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.820 3.180 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.194 1.194 23 N -0.259 5.259 24 C -0.111 4.111 25 C -0.015 4.015 26 O -0.322 6.322 27 C -0.018 4.018 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.246 0.754 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.126 0.874 48 H 0.069 0.931 49 H 0.129 0.871 50 H 0.113 0.887 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.007 5.907 -15.368 28.291 hybrid contribution 0.218 -0.179 0.576 0.641 sum -22.789 5.728 -14.792 27.766 Atomic orbital electron populations 1.22099 0.94004 1.01848 1.02555 1.21702 0.96812 0.97153 0.98217 1.21897 1.01080 0.95176 1.02518 1.22023 0.93175 0.87738 0.99314 0.88508 1.21296 0.93167 0.95163 0.87547 1.44776 1.05781 1.52436 1.34470 1.15985 0.83336 0.80015 0.80459 1.90869 1.57141 1.48302 1.55583 1.44676 1.09247 1.51677 1.32683 1.20555 0.82746 0.99892 0.95401 1.20424 0.83381 0.86394 0.87642 1.90467 1.43669 1.52626 1.64382 1.41838 1.07893 1.42193 1.27652 1.19731 0.94982 1.24846 1.06976 0.89584 1.26137 0.94393 0.98848 1.01854 1.69683 1.01075 1.42529 1.42384 0.84864 0.78054 0.77904 0.77137 1.19571 1.19659 1.19428 1.62291 1.24200 1.16329 1.23102 1.22839 1.02190 0.95918 0.90128 1.22730 0.83572 0.94905 1.00340 1.87954 1.30474 1.81953 1.31852 1.22797 1.02550 0.92886 0.83596 1.23240 0.89316 0.97528 1.02421 0.91854 0.91799 0.92292 0.90403 0.92832 0.91833 0.92124 0.93091 0.91307 0.75348 0.75379 0.89276 0.89153 0.76711 0.91090 0.92247 0.90076 0.93367 0.87440 0.93118 0.87093 0.88685 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.49 71.98 0.54 -0.76 16 2 C -0.12 -1.27 1.98 -10.79 -0.02 -1.29 16 3 C -0.15 -1.64 8.62 71.98 0.62 -1.02 16 4 C 0.09 1.12 1.66 44.92 0.07 1.20 16 5 H 0.10 1.16 7.68 -2.39 -0.02 1.14 16 6 C 0.15 2.96 4.50 86.38 0.39 3.35 16 7 N -0.72 -16.94 5.42 -478.52 -2.59 -19.54 16 8 C 0.70 22.81 8.57 179.06 1.53 24.34 16 9 O -0.64 -24.99 16.34 -3.98 -0.07 -25.06 16 10 N -0.73 -24.61 5.53 -482.30 -2.67 -27.28 16 11 C 0.14 5.38 6.15 85.63 0.53 5.91 16 12 C 0.43 20.31 7.85 87.66 0.69 21.00 16 13 O -0.62 -32.45 15.24 -3.08 -0.05 -32.49 16 14 N -0.56 -28.42 5.29 -306.99 -1.62 -30.05 16 15 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 16 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 18 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 19 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 N -0.53 -7.25 4.00 -869.99 -3.48 -10.73 16 24 C 0.02 0.24 4.33 86.32 0.37 0.61 16 25 C 0.06 0.94 7.01 72.02 0.50 1.45 16 26 O -0.40 -7.16 10.83 -148.98 -1.61 -8.77 16 27 C 0.06 0.79 7.01 72.01 0.50 1.30 16 28 C 0.00 0.03 5.06 86.31 0.44 0.46 16 29 H 0.06 0.51 7.52 -2.39 -0.02 0.49 16 30 H 0.06 0.52 8.01 -2.38 -0.02 0.50 16 31 H 0.06 0.58 5.08 -2.39 -0.01 0.57 16 32 H 0.08 0.91 6.08 -2.39 -0.01 0.89 16 33 H 0.05 0.72 6.44 -2.38 -0.02 0.70 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 1.10 7.23 -2.39 -0.02 1.08 16 37 H 0.07 1.44 6.60 -2.39 -0.02 1.43 16 38 H 0.41 8.41 8.11 -92.70 -0.75 7.66 16 39 H 0.41 13.61 7.45 -92.71 -0.69 12.92 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 42 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.06 0.75 5.08 -2.39 -0.01 0.74 16 45 H 0.08 1.22 7.13 -2.39 -0.02 1.21 16 46 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.09 0.90 8.01 -2.38 -0.02 0.88 16 51 H 0.07 0.72 4.12 -2.38 -0.01 0.71 16 Total: -1.00 -68.13 395.02 -3.52 -71.64 By element: Atomic # 1 Polarization: 49.64 SS G_CDS: -1.19 Total: 48.45 kcal Atomic # 6 Polarization: 31.14 SS G_CDS: 7.45 Total: 38.59 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -10.08 Total: -136.33 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -1.72 Total: -66.32 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.13 -3.52 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343890515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.751 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds