Wall clock time and date at job start Wed Apr 1 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47010 * 2 1 4 4 C 1.53008 * 109.46889 * 119.99254 * 2 1 3 5 5 N 1.46904 * 109.46998 * 176.37842 * 4 2 1 6 6 C 1.47009 * 111.00366 * 287.71397 * 5 4 2 7 7 C 1.53094 * 109.25886 * 177.60555 * 6 5 4 8 8 O 1.43020 * 109.25571 * 56.85095 * 7 6 5 9 9 C 1.43014 * 113.73741 * 301.32594 * 8 7 6 10 10 H 1.08998 * 109.50691 * 298.73640 * 9 8 7 11 11 C 1.52994 * 109.50804 * 178.60571 * 9 8 7 12 12 N 1.46504 * 109.47278 * 65.21869 * 11 9 8 13 13 C 1.34771 * 120.00536 * 180.02562 * 12 11 9 14 14 O 1.21588 * 119.99596 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00206 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00016 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47187 * 179.97438 * 16 15 13 18 18 O 1.21291 * 120.00038 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00114 * 180.02562 * 17 16 15 20 20 C 1.37105 * 120.00315 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99381 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00210 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00397 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99921 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46887 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46863 * 119.99711 * 24 22 20 27 27 H 1.48497 * 109.47231 * 239.99610 * 24 22 20 28 28 C 1.47008 * 110.99766 * 164.07482 * 5 4 2 29 29 H 1.09000 * 109.47221 * 58.25376 * 1 2 3 30 30 H 1.09006 * 109.47059 * 178.24780 * 1 2 3 31 31 H 1.09000 * 109.47629 * 298.24664 * 1 2 3 32 32 H 1.08995 * 109.47823 * 239.99695 * 2 1 3 33 33 H 1.09001 * 109.47519 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47293 * 299.99502 * 3 2 1 35 35 H 1.08996 * 109.47743 * 59.99587 * 3 2 1 36 36 H 1.08991 * 109.47397 * 296.38181 * 4 2 1 37 37 H 1.08995 * 109.46772 * 56.38482 * 4 2 1 38 38 H 1.09001 * 109.50226 * 297.54317 * 6 5 4 39 39 H 1.09000 * 109.50741 * 57.67091 * 6 5 4 40 40 H 1.08990 * 109.50703 * 296.91098 * 7 6 5 41 41 H 1.09003 * 109.50640 * 176.77849 * 7 6 5 42 42 H 1.08998 * 109.47748 * 185.21562 * 11 9 8 43 43 H 1.09001 * 109.47527 * 305.21913 * 11 9 8 44 44 H 0.97008 * 119.99773 * 359.97438 * 12 11 9 45 45 H 0.97001 * 119.99722 * 359.97438 * 15 13 12 46 46 H 1.08994 * 109.47586 * 300.00326 * 16 15 13 47 47 H 1.09006 * 109.46896 * 60.00292 * 16 15 13 48 48 H 0.97004 * 120.00253 * 0.02562 * 19 17 16 49 49 H 0.96996 * 120.00008 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.50954 * 302.33208 * 28 5 4 51 51 H 1.08998 * 109.50589 * 62.45907 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5063 -0.7974 1.2065 6 6 3.9542 -1.7674 0.1968 7 6 5.4842 -1.7713 0.1440 8 8 6.0003 -2.0665 1.4447 9 6 5.5845 -1.1411 2.4527 10 1 5.9431 -0.1431 2.2008 11 6 6.1604 -1.5657 3.8050 12 7 7.6212 -1.4607 3.7683 13 6 8.3478 -1.7860 4.8558 14 8 7.7909 -2.1663 5.8675 15 7 9.6916 -1.6889 4.8222 16 6 10.4814 -2.0420 6.0045 17 6 11.9458 -1.8477 5.7067 18 8 12.2955 -1.4527 4.6146 19 7 12.8671 -2.1129 6.6540 20 6 14.1994 -1.9357 6.3834 21 1 14.5106 -1.5839 5.4108 22 6 15.1491 -2.2096 7.3598 23 7 14.7705 -2.6381 8.5430 24 14 16.9645 -1.9687 6.9907 25 1 17.1258 -1.4814 5.5973 26 1 17.5329 -0.9710 7.9325 27 1 17.6776 -3.2615 7.1493 28 6 4.0554 -1.1308 2.5288 29 1 -0.3634 0.5407 -0.8739 30 1 -0.3633 -1.0272 -0.0314 31 1 -0.3634 0.4863 0.9053 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.7305 -0.1712 2.1381 37 1 1.6246 -1.7283 1.2825 38 1 3.5966 -2.7619 0.4637 39 1 3.5571 -1.4869 -0.7788 40 1 5.8399 -0.7917 -0.1751 41 1 5.8221 -2.5297 -0.5623 42 1 5.7690 -0.9153 4.5871 43 1 5.8755 -2.5969 4.0137 44 1 8.0656 -1.1577 2.9610 45 1 10.1359 -1.3852 4.0151 46 1 10.1920 -1.4032 6.8388 47 1 10.2992 -3.0847 6.2650 48 1 12.5875 -2.4292 7.5274 49 1 15.4336 -2.8296 9.2245 50 1 3.7322 -0.3855 3.2556 51 1 3.6995 -2.1151 2.8331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358316597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:39 Heat of formation + Delta-G solvation = -117.078744 kcal Electronic energy + Delta-G solvation = -29432.692061 eV Core-core repulsion = 25173.801065 eV Total energy + Delta-G solvation = -4258.890996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37142 -39.62053 -38.17328 -37.42777 -34.97882 -34.45063 -34.32287 -33.59275 -31.82177 -31.31985 -28.98944 -27.74265 -27.51838 -26.13838 -24.53708 -24.33840 -22.77502 -21.09286 -20.46869 -20.26554 -19.53876 -18.35978 -17.94135 -16.96897 -16.79516 -16.35920 -15.90892 -15.57140 -15.42697 -15.37134 -15.06487 -14.71385 -14.55460 -14.45817 -14.20198 -14.11436 -13.91054 -13.58201 -13.42435 -13.01345 -12.92227 -12.70476 -12.54988 -12.31482 -12.13713 -11.91931 -11.82763 -11.64096 -11.60518 -11.41867 -11.34676 -11.11987 -11.03659 -10.80837 -10.38628 -10.30024 -10.08171 -9.92508 -9.61614 -9.11949 -8.85307 -8.58542 -8.54015 -8.06590 -6.48462 -3.90344 2.79248 3.12485 3.24333 3.28433 3.31798 3.34483 3.47753 3.79107 4.11394 4.22553 4.37576 4.44312 4.52333 4.59449 4.62672 4.68630 4.73214 4.81193 4.94762 4.99902 5.02921 5.11457 5.17023 5.20433 5.22378 5.25616 5.31113 5.35628 5.41367 5.47971 5.54122 5.59032 5.68231 5.72714 5.85638 5.96657 5.98772 6.05587 6.12485 6.45217 6.47177 6.54308 6.80071 6.82049 7.15767 7.49146 7.96070 8.29781 8.48794 8.85201 9.08023 9.43183 9.91188 10.68583 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.034142 B = 0.001484 C = 0.001458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.916888 B =18869.018940 C =19204.210110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.138 4.138 4 C 0.059 3.941 5 N -0.534 5.534 6 C 0.015 3.985 7 C 0.064 3.936 8 O -0.375 6.375 9 C 0.083 3.917 10 H 0.076 0.924 11 C 0.151 3.849 12 N -0.744 5.744 13 C 0.706 3.294 14 O -0.600 6.600 15 N -0.724 5.724 16 C 0.129 3.871 17 C 0.429 3.571 18 O -0.597 6.597 19 N -0.550 5.550 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.027 3.973 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.400 0.600 45 H 0.407 0.593 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.396 0.604 49 H 0.273 0.727 50 H 0.090 0.910 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.590 4.310 -16.188 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.258 5.258 6 C -0.113 4.113 7 C -0.013 4.013 8 O -0.294 6.294 9 C 0.024 3.976 10 H 0.094 0.906 11 C 0.026 3.974 12 N -0.400 5.400 13 C 0.405 3.595 14 O -0.480 6.480 15 N -0.381 5.381 16 C 0.000 4.000 17 C 0.215 3.785 18 O -0.484 6.484 19 N -0.185 5.185 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.206 1.206 28 C -0.101 4.101 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.234 0.766 45 H 0.244 0.756 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.230 0.770 49 H 0.083 0.917 50 H 0.108 0.892 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -27.419 4.468 -15.872 31.995 hybrid contribution 0.585 -0.476 -0.138 0.767 sum -26.834 3.992 -16.010 31.501 Atomic orbital electron populations 1.21829 0.95089 1.01637 1.02053 1.21103 0.95097 0.97250 0.97617 1.21721 1.02185 0.94755 1.00924 1.22227 0.86421 0.99157 0.99074 1.62155 1.09560 1.48439 1.05661 1.22859 0.97065 0.94374 0.97000 1.22659 0.91703 1.01832 0.85106 1.88084 1.72235 1.51919 1.17139 1.22397 0.92867 0.93756 0.88537 0.90634 1.21071 0.79457 1.02685 0.94177 1.44858 1.06417 1.73478 1.15262 1.15812 0.81538 0.78682 0.83430 1.90900 1.71047 1.54266 1.31756 1.44752 1.04115 1.71583 1.17695 1.20776 0.89946 1.01632 0.87599 1.19783 0.86792 0.85616 0.86303 1.90491 1.81190 1.52669 1.24037 1.41793 1.06116 1.56979 1.13621 1.19782 0.80678 1.42287 1.00608 0.87645 1.25314 1.00859 0.96683 0.94869 1.69625 1.35437 1.44461 1.04002 0.85764 0.81622 0.77956 0.78773 1.19152 1.20651 1.20645 1.22676 0.94944 1.01127 0.91403 0.92397 0.92885 0.92566 0.91332 0.91473 0.93429 0.93095 0.90549 0.94561 0.93865 0.89506 0.92136 0.88292 0.90061 0.90916 0.76621 0.75575 0.90025 0.90044 0.77020 0.91682 0.89157 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.19 37.15 0.34 -0.31 16 2 C -0.09 -0.47 2.93 -90.62 -0.27 -0.74 16 3 C -0.14 -0.77 9.07 37.16 0.34 -0.44 16 4 C 0.06 0.34 4.38 -3.82 -0.02 0.32 16 5 N -0.53 -3.59 4.07 -234.32 -0.95 -4.54 16 6 C 0.02 0.10 5.47 -3.72 -0.02 0.08 16 7 C 0.06 0.46 7.01 37.21 0.26 0.72 16 8 O -0.38 -3.66 10.42 -35.23 -0.37 -4.03 16 9 C 0.08 0.71 2.84 -26.68 -0.08 0.63 16 10 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 11 C 0.15 1.61 5.34 -4.04 -0.02 1.59 16 12 N -0.74 -9.45 5.51 -65.23 -0.36 -9.81 16 13 C 0.71 11.87 8.57 -86.93 -0.74 11.13 16 14 O -0.60 -12.01 16.34 5.29 0.09 -11.93 16 15 N -0.72 -12.60 5.53 -66.42 -0.37 -12.97 16 16 C 0.13 2.46 6.15 -5.19 -0.03 2.43 16 17 C 0.43 10.01 7.85 -10.99 -0.09 9.92 16 18 O -0.60 -15.46 15.24 5.55 0.08 -15.38 16 19 N -0.55 -13.80 5.29 -10.96 -0.06 -13.86 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.11 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -24.07 13.05 55.50 0.72 -23.35 16 24 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 28 C 0.03 0.20 4.90 -3.71 -0.02 0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 6.61 -51.93 -0.34 0.02 16 33 H 0.07 0.45 7.71 -51.93 -0.40 0.05 16 34 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.04 0.22 8.05 -51.93 -0.42 -0.20 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.46 6.58 -51.93 -0.34 0.12 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.40 4.39 8.49 -40.82 -0.35 4.04 16 45 H 0.41 6.90 7.45 -40.82 -0.30 6.59 16 46 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 47 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 48 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 51 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 413.41 15.07 6.23 6.23 Total: -1.00 -32.44 413.41 -9.32 -41.76 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -8.73 Total: 14.60 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: -0.58 Total: 17.61 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -1.02 Total: -64.52 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.20 Total: -31.33 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.44 -9.32 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.314 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds