Wall clock time and date at job start Wed Apr 1 2020 02:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46895 * 109.46918 * 185.00194 * 4 2 1 6 6 C 1.47013 * 111.00227 * 66.05121 * 5 4 2 7 7 C 1.53102 * 109.25696 * 182.39392 * 6 5 4 8 8 O 1.43019 * 109.25663 * 303.14203 * 7 6 5 9 9 C 1.43016 * 113.73275 * 58.67593 * 8 7 6 10 10 H 1.08995 * 109.50689 * 61.26485 * 9 8 7 11 11 C 1.52999 * 109.50264 * 181.39172 * 9 8 7 12 12 N 1.46497 * 109.47292 * 300.00191 * 11 9 8 13 13 C 1.34780 * 120.00233 * 180.02562 * 12 11 9 14 14 O 1.21583 * 119.99660 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00203 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00262 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47208 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00228 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99731 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00010 * 180.02562 * 19 17 16 21 21 H 1.07996 * 119.99846 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00202 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99882 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47163 * 89.99375 * 24 22 20 26 26 H 1.48491 * 109.47320 * 209.99813 * 24 22 20 27 27 H 1.48501 * 109.46981 * 329.99741 * 24 22 20 28 28 C 1.47025 * 111.00026 * 189.68232 * 5 4 2 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 36 36 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 37 37 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 38 38 H 1.09000 * 109.50347 * 302.32187 * 6 5 4 39 39 H 1.08996 * 109.50893 * 62.45269 * 6 5 4 40 40 H 1.08995 * 109.51010 * 63.08674 * 7 6 5 41 41 H 1.09007 * 109.50296 * 183.21742 * 7 6 5 42 42 H 1.09001 * 109.47537 * 60.00350 * 11 9 8 43 43 H 1.09000 * 109.47154 * 180.02562 * 11 9 8 44 44 H 0.97002 * 120.00337 * 359.97438 * 12 11 9 45 45 H 0.97004 * 119.99611 * 359.97438 * 15 13 12 46 46 H 1.09006 * 109.46938 * 299.99798 * 16 15 13 47 47 H 1.08995 * 109.47397 * 59.99267 * 16 15 13 48 48 H 0.96996 * 120.00216 * 359.97438 * 19 17 16 49 49 H 0.97001 * 119.99851 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.50158 * 297.54279 * 28 5 4 51 51 H 1.08998 * 109.49898 * 57.67020 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 3.9254 -1.7004 -0.0856 7 6 5.4547 -1.7344 -0.0238 8 8 5.9682 -2.1709 -1.2852 9 6 5.5778 -1.3422 -2.3835 10 1 5.9591 -0.3325 -2.2311 11 6 6.1484 -1.9140 -3.6829 12 7 7.6103 -1.9549 -3.5980 13 6 8.3327 -2.4244 -4.6345 14 8 7.7710 -2.8144 -5.6397 15 7 9.6776 -2.4625 -4.5562 16 6 10.4629 -2.9722 -5.6830 17 6 11.9296 -2.9074 -5.3433 18 8 12.2843 -2.4771 -4.2661 19 7 12.8474 -3.3274 -6.2365 20 6 14.1817 -3.2689 -5.9273 21 1 14.4975 -2.8858 -4.9682 22 6 15.1280 -3.7015 -6.8484 23 7 14.7438 -4.1671 -8.0156 24 14 16.9461 -3.6211 -6.4274 25 1 17.3606 -4.8908 -5.7784 26 1 17.7336 -3.4202 -7.6701 27 1 17.1895 -2.4881 -5.4986 28 6 4.0498 -1.3042 -2.4693 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -1.7198 -1.2951 37 1 1.7517 -0.1583 -2.1369 38 1 3.5316 -1.3140 0.8545 39 1 3.5453 -2.7081 -0.2533 40 1 5.8324 -0.7361 0.1973 41 1 5.7722 -2.4255 0.7572 42 1 5.7649 -2.9229 -3.8352 43 1 5.8509 -1.2818 -4.5195 44 1 8.0585 -1.6434 -2.7961 45 1 10.1257 -2.1516 -3.7539 46 1 10.1814 -4.0060 -5.8838 47 1 10.2676 -2.3645 -6.5664 48 1 12.5638 -3.6718 -7.0978 49 1 15.4043 -4.4694 -8.6584 50 1 3.6717 -2.3056 -2.6750 51 1 3.7467 -0.6286 -3.2691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358316598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:41 Heat of formation + Delta-G solvation = -141.798922 kcal Electronic energy + Delta-G solvation = -29444.034102 eV Core-core repulsion = 25184.071159 eV Total energy + Delta-G solvation = -4259.962943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31404 -40.73244 -39.95680 -38.03356 -36.28471 -35.89489 -35.24324 -34.94181 -33.36552 -32.59025 -29.79676 -29.02664 -27.92791 -27.17482 -26.09212 -25.03747 -23.55223 -22.05530 -21.45953 -21.34457 -20.67080 -20.09355 -19.53029 -17.83219 -17.52414 -17.44238 -17.20547 -16.79313 -16.50790 -16.38676 -16.17782 -15.86668 -15.75474 -15.64073 -15.34048 -15.03686 -14.98627 -14.79061 -14.24627 -14.09285 -13.93045 -13.52871 -13.48140 -13.42262 -13.24759 -13.00473 -12.89053 -12.77319 -12.46331 -12.44015 -12.27301 -12.11502 -11.86068 -11.76966 -11.58191 -11.55469 -11.44559 -11.29941 -10.62146 -10.53703 -10.42533 -10.08561 -9.80614 -9.38883 -8.49406 -5.99571 1.37788 1.43557 1.54571 1.61291 1.91585 2.13111 2.29884 2.65266 2.75402 3.08043 3.17915 3.35239 3.73247 3.86634 3.90741 3.97290 4.03778 4.12662 4.23431 4.25104 4.26678 4.44199 4.46623 4.48019 4.50672 4.58394 4.65084 4.67476 4.72631 4.81124 4.84687 4.87162 4.94617 5.02110 5.08872 5.14132 5.29546 5.32772 5.40129 5.43568 5.46219 5.53166 5.91400 5.93448 5.96628 5.98814 6.17515 6.50031 7.03193 7.05171 7.44325 7.54195 7.96481 8.67529 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.035806 B = 0.001483 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.807542 B =18881.424547 C =19287.532625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.135 4.135 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.017 3.983 7 C 0.061 3.939 8 O -0.397 6.397 9 C 0.092 3.908 10 H 0.082 0.918 11 C 0.151 3.849 12 N -0.727 5.727 13 C 0.705 3.295 14 O -0.633 6.633 15 N -0.724 5.724 16 C 0.142 3.858 17 C 0.433 3.567 18 O -0.624 6.624 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.086 0.914 22 C -0.010 4.010 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.030 3.970 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.410 0.590 45 H 0.410 0.590 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.399 0.601 49 H 0.280 0.720 50 H 0.040 0.960 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.158 8.314 15.783 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.192 4.192 4 C -0.067 4.067 5 N -0.261 5.261 6 C -0.111 4.111 7 C -0.015 4.015 8 O -0.316 6.316 9 C 0.034 3.966 10 H 0.100 0.900 11 C 0.026 3.974 12 N -0.383 5.383 13 C 0.405 3.595 14 O -0.514 6.514 15 N -0.382 5.382 16 C 0.014 3.986 17 C 0.220 3.780 18 O -0.512 6.512 19 N -0.194 5.194 20 C -0.468 4.468 21 H 0.104 0.896 22 C -0.210 4.210 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.099 4.099 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.246 0.754 45 H 0.247 0.753 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.233 0.767 49 H 0.089 0.911 50 H 0.058 0.942 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.019 8.474 15.467 33.108 hybrid contribution 0.678 -0.729 0.060 0.997 sum -27.341 7.745 15.527 32.382 Atomic orbital electron populations 1.21807 0.94402 1.01848 1.02319 1.21116 0.95699 0.96892 0.97220 1.21684 1.01392 0.95016 1.01148 1.22242 0.85759 0.99099 0.99608 1.62203 1.11009 1.49644 1.03196 1.22858 0.96729 0.95195 0.96306 1.22814 0.92138 1.01275 0.85311 1.88039 1.74053 1.53347 1.16204 1.22288 0.93762 0.94745 0.85805 0.90001 1.21216 0.77992 1.01813 0.96356 1.44775 1.07061 1.68665 1.17841 1.15906 0.81213 0.78721 0.83667 1.90876 1.71249 1.56612 1.32709 1.44679 1.04329 1.68791 1.20396 1.20581 0.87062 1.01226 0.89766 1.20423 0.88266 0.83711 0.85550 1.90467 1.82046 1.53170 1.25501 1.41823 1.05826 1.55134 1.16655 1.19750 0.82080 1.42112 1.02812 0.89572 1.26118 1.04768 0.95510 0.94635 1.69683 1.37086 1.41664 1.07162 0.84866 0.76296 0.78873 0.77932 1.19596 1.19642 1.19454 1.22626 0.93999 1.00105 0.93144 0.92437 0.92728 0.92006 0.91201 0.92538 0.93157 0.92964 0.94936 0.90236 0.88053 0.94707 0.91701 0.87245 0.92236 0.89391 0.75410 0.75264 0.89150 0.88928 0.76689 0.91088 0.94163 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 71.98 0.66 -0.40 16 2 C -0.09 -0.79 2.84 -10.79 -0.03 -0.82 16 3 C -0.14 -1.29 9.08 71.98 0.65 -0.63 16 4 C 0.06 0.62 4.35 86.30 0.38 0.99 16 5 N -0.54 -6.51 4.18 -895.23 -3.74 -10.26 16 6 C 0.02 0.20 5.44 86.32 0.47 0.67 16 7 C 0.06 0.79 7.01 72.02 0.50 1.30 16 8 O -0.40 -7.33 10.22 -148.98 -1.52 -8.85 16 9 C 0.09 1.47 2.89 30.62 0.09 1.56 16 10 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 11 C 0.15 3.09 5.37 86.38 0.46 3.55 16 12 N -0.73 -17.90 5.45 -478.54 -2.61 -20.51 16 13 C 0.71 23.26 8.57 179.05 1.53 24.80 16 14 O -0.63 -24.97 16.34 -3.98 -0.07 -25.04 16 15 N -0.72 -24.81 5.53 -482.31 -2.67 -27.48 16 16 C 0.14 5.37 6.15 85.63 0.53 5.89 16 17 C 0.43 20.31 7.85 87.66 0.69 21.00 16 18 O -0.62 -32.58 15.24 -3.07 -0.05 -32.62 16 19 N -0.56 -28.36 5.29 -306.99 -1.62 -29.98 16 20 C -0.34 -18.77 9.68 84.04 0.81 -17.96 16 21 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 22 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 23 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 24 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 C 0.03 0.40 4.93 86.31 0.43 0.83 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.61 6.29 -2.39 -0.02 0.60 16 33 H 0.06 0.66 7.75 -2.39 -0.02 0.64 16 34 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 37 H 0.08 0.79 8.04 -2.39 -0.02 0.77 16 38 H 0.10 0.90 6.28 -2.39 -0.01 0.88 16 39 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.41 8.65 8.36 -92.71 -0.78 7.87 16 45 H 0.41 13.71 7.45 -92.71 -0.69 13.02 16 46 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 47 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 49 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 Total: -1.00 -68.23 412.77 -3.57 -71.80 By element: Atomic # 1 Polarization: 48.09 SS G_CDS: -1.25 Total: 46.84 kcal Atomic # 6 Polarization: 33.10 SS G_CDS: 7.64 Total: 40.74 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -10.36 Total: -136.85 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -1.63 Total: -66.51 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.23 -3.57 -71.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.997 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds