Wall clock time and date at job start Wed Apr 1 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99484 * 2 1 4 4 C 1.53000 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47067 * 60.00168 * 4 3 2 6 6 C 1.53004 * 109.47335 * 300.00050 * 4 3 2 7 7 N 1.46905 * 109.47219 * 179.97438 * 4 3 2 8 8 C 1.46903 * 111.00043 * 179.97438 * 7 4 3 9 9 C 1.53236 * 109.33774 * 187.25299 * 8 7 4 10 10 N 1.47076 * 108.52492 * 306.17080 * 9 8 7 11 11 C 1.34777 * 120.88548 * 231.16648 * 10 9 8 12 12 O 1.21585 * 120.00534 * 174.79957 * 11 10 9 13 13 N 1.34776 * 119.99611 * 354.79626 * 11 10 9 14 14 C 1.46504 * 120.00057 * 184.97619 * 13 11 10 15 15 C 1.50696 * 109.47200 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00355 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99987 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00066 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99855 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99785 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99632 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47051 * 89.99939 * 22 20 18 24 24 H 1.48501 * 109.47006 * 209.99564 * 22 20 18 25 25 H 1.48502 * 109.47048 * 329.99769 * 22 20 18 26 26 C 1.47084 * 118.23637 * 51.18701 * 10 9 8 27 27 C 1.46902 * 111.00169 * 304.30143 * 7 4 3 28 28 H 1.09001 * 109.46702 * 60.00387 * 1 2 3 29 29 H 1.09004 * 109.46770 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47401 * 300.00400 * 1 2 3 31 31 H 1.08997 * 109.47588 * 59.99974 * 3 2 1 32 32 H 1.08999 * 109.47224 * 299.99696 * 3 2 1 33 33 H 1.09000 * 109.46979 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47004 * 299.99797 * 5 4 3 35 35 H 1.08999 * 109.47253 * 59.99889 * 5 4 3 36 36 H 1.09000 * 109.46716 * 300.00100 * 6 4 3 37 37 H 1.08995 * 109.46434 * 59.99769 * 6 4 3 38 38 H 1.09000 * 109.46913 * 179.97438 * 6 4 3 39 39 H 1.09002 * 109.49459 * 307.21697 * 8 7 4 40 40 H 1.09000 * 109.48969 * 67.29858 * 8 7 4 41 41 H 1.08998 * 109.63216 * 65.88368 * 9 8 7 42 42 H 1.09006 * 109.62596 * 186.45976 * 9 8 7 43 43 H 0.96994 * 120.00253 * 4.97871 * 13 11 10 44 44 H 1.09001 * 109.47412 * 300.00408 * 14 13 11 45 45 H 1.09006 * 109.46859 * 60.00445 * 14 13 11 46 46 H 0.97001 * 120.00205 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99599 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.62535 * 189.11125 * 26 10 9 49 49 H 1.08993 * 109.78787 * 68.61614 * 26 10 9 50 50 H 1.08998 * 109.48912 * 292.70944 * 27 7 4 51 51 H 1.09007 * 109.48914 * 52.78555 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9864 0.4257 1.2502 7 7 4.1329 2.5268 0.0000 8 6 5.5999 2.4500 0.0012 9 6 6.1815 3.8560 0.1831 10 7 5.6057 4.7364 -0.8447 11 6 6.3971 5.4990 -1.6248 12 8 5.9130 6.1487 -2.5313 13 7 7.7253 5.5414 -1.4000 14 6 8.5709 6.4523 -2.1757 15 6 10.0040 6.3067 -1.7332 16 8 10.2911 5.5192 -0.8565 17 7 10.9669 7.0515 -2.3117 18 6 12.2708 6.9187 -1.9095 19 1 12.5264 6.2170 -1.1294 20 6 13.2635 7.6862 -2.5063 21 7 14.5134 7.5585 -2.1211 22 14 12.8214 8.8995 -3.8561 23 1 12.5099 10.2199 -3.2522 24 1 13.9674 9.0403 -4.7899 25 1 11.6354 8.4028 -4.5991 26 6 4.1431 4.7629 -0.9985 27 6 3.6413 3.3214 -1.1336 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 5.0740 0.3389 -1.2476 34 1 3.5441 -0.5704 -1.2483 35 1 3.6661 0.9660 -2.1385 36 1 3.6644 0.9668 2.1399 37 1 3.5431 -0.5700 1.2501 38 1 5.0730 0.3393 1.2504 39 1 5.9300 1.8110 0.8203 40 1 5.9430 2.0342 -0.9461 41 1 5.9255 4.2329 1.1733 42 1 7.2651 3.8213 0.0703 43 1 8.1214 4.9689 -0.7246 44 1 8.4908 6.2088 -3.2352 45 1 8.2433 7.4792 -2.0131 46 1 10.7374 7.6810 -3.0131 47 1 15.2064 8.0946 -2.5375 48 1 3.8792 5.3278 -1.8925 49 1 3.6886 5.2280 -0.1238 50 1 4.0114 2.8935 -2.0652 51 1 2.5513 3.3142 -1.1373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425780463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:26 Heat of formation + Delta-G solvation = -78.883229 kcal Electronic energy + Delta-G solvation = -30782.191664 eV Core-core repulsion = 26524.956950 eV Total energy + Delta-G solvation = -4257.234714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.73796 -39.61441 -38.45845 -37.76067 -35.62695 -34.58673 -33.81321 -32.07098 -31.77397 -31.48799 -28.18211 -27.88820 -27.62909 -26.51173 -25.86655 -24.30567 -23.37807 -21.93766 -19.93236 -19.73465 -19.25204 -18.61186 -17.86080 -17.11852 -16.46525 -16.28202 -15.93741 -15.72195 -15.58275 -15.14842 -15.11075 -14.87968 -14.73103 -14.46338 -14.23881 -14.02978 -13.88714 -13.62073 -13.15531 -13.08832 -12.72510 -12.56911 -12.46989 -12.29222 -12.17118 -12.12222 -12.00757 -11.95628 -11.70695 -11.48942 -11.27329 -11.23675 -11.13562 -10.72494 -10.64243 -10.08052 -10.05806 -9.99009 -9.69998 -9.07185 -8.77101 -8.76600 -8.40276 -8.30337 -6.41004 -3.93543 2.59544 2.99733 3.04389 3.05854 3.12617 3.28511 3.57279 3.76815 3.93754 4.03692 4.36545 4.44101 4.55080 4.61994 4.74097 4.75856 4.87313 4.90763 4.91954 5.03160 5.08338 5.10737 5.14222 5.22885 5.24851 5.27664 5.36765 5.42754 5.49830 5.52699 5.61577 5.63878 5.67432 5.70543 5.78575 5.80178 5.86088 5.92808 6.00851 6.37607 6.59395 6.63695 6.69052 6.78581 7.00975 7.44695 7.99904 8.08172 8.44085 8.69888 8.81466 9.29721 9.63291 10.71120 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.001932 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.876061 B =14490.247256 C =15054.554966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.072 3.928 4 C 0.110 3.890 5 C -0.177 4.177 6 C -0.136 4.136 7 N -0.523 5.523 8 C 0.038 3.962 9 C 0.115 3.885 10 N -0.632 5.632 11 C 0.710 3.290 12 O -0.597 6.597 13 N -0.725 5.725 14 C 0.125 3.875 15 C 0.439 3.561 16 O -0.580 6.580 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C 0.137 3.863 27 C 0.032 3.968 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.407 0.593 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.374 0.626 47 H 0.275 0.725 48 H 0.096 0.904 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.097 -12.088 3.799 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.005 4.005 4 C 0.021 3.979 5 C -0.236 4.236 6 C -0.193 4.193 7 N -0.249 5.249 8 C -0.090 4.090 9 C -0.009 4.009 10 N -0.370 5.370 11 C 0.411 3.589 12 O -0.477 6.477 13 N -0.385 5.385 14 C -0.004 4.004 15 C 0.225 3.775 16 O -0.464 6.464 17 N -0.214 5.214 18 C -0.438 4.438 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C 0.014 3.986 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.247 0.753 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.208 0.792 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.062 0.938 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.003 -11.972 4.139 29.827 hybrid contribution 0.129 0.559 -1.550 1.653 sum -26.874 -11.413 2.588 29.311 Atomic orbital electron populations 1.22734 0.80881 1.02751 1.00018 1.87831 1.19632 1.27675 1.95428 1.22542 0.92668 0.84524 1.00718 1.20938 0.92513 0.88268 0.96228 1.22413 1.01673 1.01755 0.97741 1.21842 1.01156 1.00082 0.96250 1.62100 1.06915 1.12957 1.42957 1.22574 0.87162 0.97302 1.01963 1.21762 0.98084 0.88923 0.92131 1.47222 1.06443 1.45526 1.37853 1.15729 0.81229 0.80177 0.81739 1.90884 1.74406 1.49095 1.33276 1.44928 1.05220 1.45120 1.43228 1.20811 0.89238 0.94174 0.96128 1.19651 0.86172 0.85316 0.86386 1.90527 1.82416 1.39716 1.33786 1.42115 1.07861 1.36628 1.34763 1.19439 0.80052 1.23471 1.20885 0.86080 1.25064 0.95005 0.97816 0.98005 1.69622 0.99844 1.40036 1.41818 0.86673 0.78898 0.81908 0.82032 1.19389 1.19992 1.19208 1.21495 0.78433 0.95525 1.03192 1.22666 1.00368 0.94136 0.92488 0.94149 0.89599 0.94000 0.92303 0.93136 0.92225 0.91113 0.92674 0.91860 0.91345 0.92305 0.88812 0.93656 0.90394 0.89406 0.75294 0.89881 0.89933 0.79228 0.91396 0.88531 0.91091 0.93751 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.09 9.35 -35.23 -0.33 -3.42 16 3 C 0.07 0.53 4.45 37.16 0.17 0.70 16 4 C 0.11 0.86 0.54 -131.59 -0.07 0.79 16 5 C -0.18 -1.46 7.65 37.16 0.28 -1.18 16 6 C -0.14 -1.01 8.11 37.16 0.30 -0.70 16 7 N -0.52 -4.40 4.44 -218.66 -0.97 -5.37 16 8 C 0.04 0.34 4.77 -3.70 -0.02 0.32 16 9 C 0.11 1.18 6.54 -3.61 -0.02 1.15 16 10 N -0.63 -7.90 3.01 -178.20 -0.54 -8.44 16 11 C 0.71 11.45 8.31 -86.92 -0.72 10.72 16 12 O -0.60 -11.34 15.80 5.29 0.08 -11.26 16 13 N -0.73 -11.99 5.44 -66.41 -0.36 -12.35 16 14 C 0.13 2.21 6.16 -5.19 -0.03 2.18 16 15 C 0.44 9.66 7.85 -10.99 -0.09 9.57 16 16 O -0.58 -14.54 15.24 5.55 0.08 -14.46 16 17 N -0.58 -13.39 5.09 -10.97 -0.06 -13.45 16 18 C -0.31 -8.52 10.16 -14.93 -0.15 -8.68 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.91 13.96 55.50 0.77 -24.13 16 22 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 26 C 0.14 1.43 6.61 -3.60 -0.02 1.40 16 27 C 0.03 0.28 4.81 -3.70 -0.02 0.26 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.35 6.19 -51.93 -0.32 0.03 16 33 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.05 0.48 6.66 -51.93 -0.35 0.13 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 38 H 0.06 0.42 6.25 -51.93 -0.32 0.09 16 39 H 0.09 0.72 5.95 -51.93 -0.31 0.41 16 40 H 0.05 0.45 6.72 -51.93 -0.35 0.10 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.95 5.74 -51.93 -0.30 0.65 16 43 H 0.41 6.59 4.98 -40.82 -0.20 6.39 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 47 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.10 1.12 7.04 -51.93 -0.37 0.75 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.04 0.44 6.79 -51.93 -0.35 0.09 16 51 H 0.09 0.61 5.83 -51.93 -0.30 0.31 16 LS Contribution 392.10 15.07 5.91 5.91 Total: -1.00 -32.90 392.10 -7.40 -40.30 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -7.91 Total: 13.43 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 0.62 Total: 18.94 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.15 Total: -63.74 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.16 Total: -29.14 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.90 -7.40 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425780463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.581 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds