Wall clock time and date at job start Wed Apr 1 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99484 * 2 1 4 4 C 1.53000 * 109.46880 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47067 * 60.00168 * 4 3 2 6 6 C 1.53004 * 109.47335 * 300.00050 * 4 3 2 7 7 N 1.46905 * 109.47219 * 179.97438 * 4 3 2 8 8 C 1.46903 * 111.00043 * 179.97438 * 7 4 3 9 9 C 1.53236 * 109.33774 * 187.25299 * 8 7 4 10 10 N 1.47076 * 108.52492 * 306.17080 * 9 8 7 11 11 C 1.34777 * 120.88548 * 231.16648 * 10 9 8 12 12 O 1.21585 * 120.00534 * 174.79957 * 11 10 9 13 13 N 1.34776 * 119.99611 * 354.79626 * 11 10 9 14 14 C 1.46504 * 120.00057 * 184.97619 * 13 11 10 15 15 C 1.50696 * 109.47200 * 179.97438 * 14 13 11 16 16 O 1.21291 * 120.00355 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99987 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00066 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99855 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99785 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99632 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00197 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47051 * 89.99939 * 22 20 18 24 24 H 1.48501 * 109.47006 * 209.99564 * 22 20 18 25 25 H 1.48502 * 109.47048 * 329.99769 * 22 20 18 26 26 C 1.47084 * 118.23637 * 51.18701 * 10 9 8 27 27 C 1.46902 * 111.00169 * 304.30143 * 7 4 3 28 28 H 1.09001 * 109.46702 * 60.00387 * 1 2 3 29 29 H 1.09004 * 109.46770 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47401 * 300.00400 * 1 2 3 31 31 H 1.08997 * 109.47588 * 59.99974 * 3 2 1 32 32 H 1.08999 * 109.47224 * 299.99696 * 3 2 1 33 33 H 1.09000 * 109.46979 * 180.02562 * 5 4 3 34 34 H 1.08992 * 109.47004 * 299.99797 * 5 4 3 35 35 H 1.08999 * 109.47253 * 59.99889 * 5 4 3 36 36 H 1.09000 * 109.46716 * 300.00100 * 6 4 3 37 37 H 1.08995 * 109.46434 * 59.99769 * 6 4 3 38 38 H 1.09000 * 109.46913 * 179.97438 * 6 4 3 39 39 H 1.09002 * 109.49459 * 307.21697 * 8 7 4 40 40 H 1.09000 * 109.48969 * 67.29858 * 8 7 4 41 41 H 1.08998 * 109.63216 * 65.88368 * 9 8 7 42 42 H 1.09006 * 109.62596 * 186.45976 * 9 8 7 43 43 H 0.96994 * 120.00253 * 4.97871 * 13 11 10 44 44 H 1.09001 * 109.47412 * 300.00408 * 14 13 11 45 45 H 1.09006 * 109.46859 * 60.00445 * 14 13 11 46 46 H 0.97001 * 120.00205 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99599 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.62535 * 189.11125 * 26 10 9 49 49 H 1.08993 * 109.78787 * 68.61614 * 26 10 9 50 50 H 1.08998 * 109.48912 * 292.70944 * 27 7 4 51 51 H 1.09007 * 109.48914 * 52.78555 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9864 0.4257 1.2502 7 7 4.1329 2.5268 0.0000 8 6 5.5999 2.4500 0.0012 9 6 6.1815 3.8560 0.1831 10 7 5.6057 4.7364 -0.8447 11 6 6.3971 5.4990 -1.6248 12 8 5.9130 6.1487 -2.5313 13 7 7.7253 5.5414 -1.4000 14 6 8.5709 6.4523 -2.1757 15 6 10.0040 6.3067 -1.7332 16 8 10.2911 5.5192 -0.8565 17 7 10.9669 7.0515 -2.3117 18 6 12.2708 6.9187 -1.9095 19 1 12.5264 6.2170 -1.1294 20 6 13.2635 7.6862 -2.5063 21 7 14.5134 7.5585 -2.1211 22 14 12.8214 8.8995 -3.8561 23 1 12.5099 10.2199 -3.2522 24 1 13.9674 9.0403 -4.7899 25 1 11.6354 8.4028 -4.5991 26 6 4.1431 4.7629 -0.9985 27 6 3.6413 3.3214 -1.1336 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 5.0740 0.3389 -1.2476 34 1 3.5441 -0.5704 -1.2483 35 1 3.6661 0.9660 -2.1385 36 1 3.6644 0.9668 2.1399 37 1 3.5431 -0.5700 1.2501 38 1 5.0730 0.3393 1.2504 39 1 5.9300 1.8110 0.8203 40 1 5.9430 2.0342 -0.9461 41 1 5.9255 4.2329 1.1733 42 1 7.2651 3.8213 0.0703 43 1 8.1214 4.9689 -0.7246 44 1 8.4908 6.2088 -3.2352 45 1 8.2433 7.4792 -2.0131 46 1 10.7374 7.6810 -3.0131 47 1 15.2064 8.0946 -2.5375 48 1 3.8792 5.3278 -1.8925 49 1 3.6886 5.2280 -0.1238 50 1 4.0114 2.8935 -2.0652 51 1 2.5513 3.3142 -1.1373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425780463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:25 Heat of formation + Delta-G solvation = -105.036058 kcal Electronic energy + Delta-G solvation = -30783.325736 eV Core-core repulsion = 26524.956950 eV Total energy + Delta-G solvation = -4258.368786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72969 -40.68780 -40.04492 -38.48284 -36.53175 -36.30900 -35.41899 -33.83634 -32.85644 -32.29528 -29.56835 -28.41202 -28.29203 -27.56936 -26.45975 -26.03831 -24.18441 -22.89177 -21.49490 -20.92127 -20.68107 -19.99961 -18.97536 -17.84040 -17.60685 -17.25881 -17.02614 -16.79703 -16.73553 -16.60834 -16.05239 -15.86769 -15.77778 -15.56864 -15.36526 -15.08690 -14.89886 -14.68663 -14.36758 -14.25244 -14.05688 -13.97892 -13.55411 -13.39760 -13.23277 -12.96158 -12.87797 -12.76471 -12.68256 -12.44416 -12.28143 -12.10929 -12.00625 -12.00051 -11.90052 -11.57968 -11.36726 -11.27644 -10.65451 -10.54940 -10.36396 -10.29320 -9.71204 -9.25549 -8.45307 -6.07163 1.31361 1.34225 1.43271 1.48952 1.78387 2.04839 2.20617 2.43881 2.68174 2.98685 3.11045 3.16479 3.74412 3.78549 3.89601 3.95149 4.00279 4.13296 4.17956 4.20876 4.33445 4.38517 4.40010 4.43665 4.49777 4.54259 4.61536 4.64747 4.68432 4.75456 4.78107 4.83726 4.88494 4.90045 5.00065 5.01828 5.04513 5.25508 5.27657 5.39221 5.42235 5.50361 5.80309 5.88634 5.96631 6.04457 6.26354 6.48903 6.78012 6.85254 7.28077 7.45323 7.77876 8.70988 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.001932 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.876061 B =14490.247256 C =15054.554966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.075 3.925 4 C 0.110 3.890 5 C -0.172 4.172 6 C -0.132 4.132 7 N -0.520 5.520 8 C 0.043 3.957 9 C 0.114 3.886 10 N -0.627 5.627 11 C 0.708 3.292 12 O -0.627 6.627 13 N -0.729 5.729 14 C 0.137 3.863 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.577 5.577 18 C -0.331 4.331 19 H 0.064 0.936 20 C -0.007 4.007 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.233 1.233 26 C 0.135 3.865 27 C 0.039 3.961 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.408 0.592 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.392 0.608 47 H 0.281 0.719 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.031 0.969 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.694 -11.433 2.981 31.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.002 4.002 4 C 0.021 3.979 5 C -0.230 4.230 6 C -0.189 4.189 7 N -0.245 5.245 8 C -0.085 4.085 9 C -0.009 4.009 10 N -0.364 5.364 11 C 0.409 3.591 12 O -0.509 6.509 13 N -0.389 5.389 14 C 0.009 3.991 15 C 0.234 3.766 16 O -0.499 6.499 17 N -0.217 5.217 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.157 1.157 26 C 0.013 3.987 27 C -0.089 4.089 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.248 0.752 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.228 0.772 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.049 0.951 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.648 -11.351 3.346 31.922 hybrid contribution 0.884 0.216 -1.169 1.481 sum -28.764 -11.135 2.177 30.921 Atomic orbital electron populations 1.22891 0.79582 1.03676 1.00721 1.87804 1.21115 1.27975 1.95555 1.22504 0.92037 0.84544 1.01081 1.20969 0.93118 0.87742 0.96118 1.22355 1.01239 1.01610 0.97832 1.21798 1.01231 0.99863 0.96024 1.62115 1.06470 1.13339 1.42602 1.22527 0.87565 0.96461 1.01977 1.21890 0.97725 0.89328 0.91998 1.47334 1.07094 1.44681 1.37305 1.15819 0.81014 0.80396 0.81842 1.90859 1.74803 1.50552 1.34680 1.44912 1.05514 1.45151 1.43278 1.20701 0.85917 0.95621 0.96877 1.20466 0.87720 0.83553 0.84904 1.90516 1.83497 1.40825 1.35111 1.41914 1.06483 1.37657 1.35651 1.19033 0.82545 1.23612 1.20807 0.91757 1.26049 0.94294 0.99671 1.00704 1.69782 1.01404 1.41574 1.43714 0.85458 0.79830 0.78811 0.78113 1.18065 1.19843 1.15675 1.21645 0.77110 0.96663 1.03316 1.22612 1.01462 0.92904 0.91952 0.93508 0.88676 0.93200 0.91910 0.92705 0.92757 0.91389 0.93172 0.91681 0.91615 0.92116 0.87339 0.94820 0.89096 0.90160 0.75188 0.88281 0.87938 0.77242 0.90935 0.89712 0.89597 0.95059 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -5.82 9.35 -148.98 -1.39 -7.21 16 3 C 0.08 0.96 4.45 71.98 0.32 1.28 16 4 C 0.11 1.54 0.54 3.53 0.00 1.54 16 5 C -0.17 -2.67 7.65 71.98 0.55 -2.12 16 6 C -0.13 -1.74 8.11 71.98 0.58 -1.16 16 7 N -0.52 -7.78 4.44 -845.72 -3.76 -11.53 16 8 C 0.04 0.71 4.77 86.38 0.41 1.12 16 9 C 0.11 2.18 6.54 86.35 0.56 2.75 16 10 N -0.63 -14.86 3.01 -835.96 -2.52 -17.37 16 11 C 0.71 21.98 8.31 179.05 1.49 23.46 16 12 O -0.63 -22.99 15.80 -3.98 -0.06 -23.05 16 13 N -0.73 -23.33 5.44 -482.29 -2.62 -25.95 16 14 C 0.14 4.61 6.16 85.63 0.53 5.14 16 15 C 0.45 19.50 7.85 87.66 0.69 20.18 16 16 O -0.61 -31.44 15.24 -3.06 -0.05 -31.49 16 17 N -0.58 -26.54 5.09 -306.99 -1.56 -28.10 16 18 C -0.33 -18.74 10.16 84.04 0.85 -17.89 16 19 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 20 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 21 N -0.93 -54.19 13.96 21.66 0.30 -53.89 16 22 Si 0.96 38.10 27.74 68.60 1.90 40.01 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 26 C 0.14 2.59 6.61 86.34 0.57 3.17 16 27 C 0.04 0.61 4.81 86.38 0.42 1.03 16 28 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.64 6.19 -2.39 -0.01 0.62 16 33 H 0.05 0.89 6.57 -2.39 -0.02 0.88 16 34 H 0.07 1.09 7.68 -2.39 -0.02 1.08 16 35 H 0.05 0.82 6.66 -2.39 -0.02 0.81 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 38 H 0.06 0.77 6.25 -2.39 -0.01 0.75 16 39 H 0.11 1.48 5.95 -2.39 -0.01 1.47 16 40 H 0.03 0.65 6.72 -2.39 -0.02 0.63 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 1.69 5.74 -2.38 -0.01 1.67 16 43 H 0.41 13.04 4.98 -92.71 -0.46 12.58 16 44 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.10 3.11 8.14 -2.38 -0.02 3.09 16 46 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 47 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.08 1.87 7.04 -2.39 -0.02 1.85 16 49 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.03 0.59 6.79 -2.39 -0.02 0.57 16 51 H 0.11 1.25 5.83 -2.38 -0.01 1.24 16 Total: -1.00 -73.61 392.10 -1.15 -74.76 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: -0.09 Total: 43.75 kcal Atomic # 6 Polarization: 31.38 SS G_CDS: 8.69 Total: 40.07 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -10.16 Total: -136.85 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -1.50 Total: -61.75 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -73.61 -1.15 -74.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425780463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.276 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds