Wall clock time and date at job start Wed Apr 1 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99811 * 2 1 4 4 C 1.50696 * 119.99985 * 179.97438 * 2 1 3 5 5 N 1.46900 * 109.47243 * 95.00573 * 4 2 1 6 6 C 1.46842 * 111.00390 * 169.99880 * 5 4 2 7 7 C 1.53043 * 109.52555 * 185.83567 * 6 5 4 8 8 C 1.53113 * 109.27529 * 300.81781 * 7 6 5 9 9 N 1.46507 * 109.52184 * 177.55816 * 8 7 6 10 10 C 1.34773 * 120.00266 * 155.00410 * 9 8 7 11 11 O 1.21282 * 119.99503 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.50707 * 109.47262 * 179.97438 * 12 10 9 14 14 C 1.37643 * 120.12639 * 265.30991 * 13 12 10 15 15 C 1.38615 * 120.24281 * 180.31829 * 14 13 12 16 16 C 1.38658 * 120.50051 * 359.66907 * 15 14 13 17 17 C 1.37593 * 120.25264 * 0.02562 * 16 15 14 18 18 C 1.40688 * 120.12508 * 84.99750 * 13 12 10 19 19 C 1.41401 * 120.24844 * 359.97438 * 18 13 12 20 20 H 1.07999 * 119.99289 * 334.28466 * 19 18 13 21 21 C 1.39937 * 120.00394 * 154.28925 * 19 18 13 22 22 N 1.30829 * 120.00181 * 334.60180 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 154.60226 * 21 19 18 24 24 H 1.48505 * 109.47160 * 179.97438 * 23 21 19 25 25 H 1.48495 * 109.47100 * 300.00105 * 23 21 19 26 26 H 1.48502 * 109.47051 * 60.00179 * 23 21 19 27 27 C 1.53122 * 109.16404 * 57.65767 * 8 7 6 28 28 C 1.46853 * 110.99577 * 294.20443 * 5 4 2 29 29 H 1.07996 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99613 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47241 * 270.00097 * 3 2 1 32 32 H 1.09008 * 109.46827 * 30.00119 * 3 2 1 33 33 H 1.08997 * 109.47127 * 150.00028 * 3 2 1 34 34 H 1.08994 * 109.47342 * 334.99707 * 4 2 1 35 35 H 1.09002 * 109.47043 * 214.99658 * 4 2 1 36 36 H 1.08999 * 109.46477 * 65.82072 * 6 5 4 37 37 H 1.08998 * 109.45097 * 305.84352 * 6 5 4 38 38 H 1.08998 * 109.50262 * 180.87694 * 7 6 5 39 39 H 1.09000 * 109.49745 * 60.75685 * 7 6 5 40 40 H 1.08989 * 109.52839 * 297.68475 * 8 7 6 41 41 H 0.97000 * 119.99705 * 335.00105 * 9 8 7 42 42 H 1.09001 * 109.46892 * 59.99768 * 12 10 9 43 43 H 1.08991 * 109.47294 * 299.99778 * 12 10 9 44 44 H 1.07998 * 119.87840 * 0.02562 * 14 13 12 45 45 H 1.07996 * 119.74749 * 179.68975 * 15 14 13 46 46 H 1.08000 * 119.87393 * 180.02562 * 16 15 14 47 47 H 1.07996 * 120.12941 * 180.02562 * 17 16 15 48 48 H 0.96998 * 119.99709 * 354.17607 * 22 21 19 49 49 H 1.09001 * 109.50331 * 62.27933 * 27 8 7 50 50 H 1.08993 * 109.50821 * 182.40538 * 27 8 7 51 51 H 1.08994 * 109.46200 * 294.17537 * 28 5 4 52 52 H 1.09005 * 109.45893 * 54.16042 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4130 -1.6694 -1.3789 6 6 3.3460 -2.8030 -1.4037 7 6 3.7999 -3.0606 -2.8424 8 6 2.5765 -3.3634 -3.7118 9 7 2.9986 -3.5535 -5.1018 10 6 2.2475 -4.2966 -5.9386 11 8 1.2224 -4.8082 -5.5407 12 6 2.6821 -4.4926 -7.3681 13 6 1.6764 -5.3563 -8.0850 14 6 1.8745 -6.7152 -8.1780 15 6 0.9544 -7.5110 -8.8424 16 6 -0.1776 -6.9505 -9.4144 17 6 -0.3991 -5.5953 -9.3283 18 6 0.5282 -4.7775 -8.6560 19 6 0.3106 -3.3836 -8.5606 20 1 0.7470 -2.8235 -7.7468 21 6 -0.4702 -2.7300 -9.5204 22 7 -0.5860 -3.2330 -10.7226 23 14 -1.3473 -1.1391 -9.0853 24 1 -2.1017 -0.6504 -10.2674 25 1 -2.2885 -1.3837 -7.9631 26 1 -0.3482 -0.1180 -8.6797 27 6 1.5986 -2.1880 -3.6303 28 6 1.2085 -1.9557 -2.1688 29 1 -0.5401 0.9352 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 2.2451 1.6198 -1.0276 32 1 1.4743 2.0647 0.5139 33 1 3.0159 1.1748 0.5138 34 1 1.4387 -2.0852 0.4353 35 1 2.9742 -1.1985 0.5899 36 1 2.8483 -3.6916 -1.0153 37 1 4.2133 -2.5728 -0.7850 38 1 4.4803 -3.9119 -2.8624 39 1 4.3099 -2.1772 -3.2267 40 1 2.0891 -4.2695 -3.3520 41 1 3.8187 -3.1446 -5.4198 42 1 3.6576 -4.9785 -7.3879 43 1 2.7485 -3.5241 -7.8637 44 1 2.7524 -7.1624 -7.7357 45 1 1.1203 -8.5757 -8.9149 46 1 -0.8880 -7.5801 -9.9294 47 1 -1.2817 -5.1609 -9.7741 48 1 -0.0649 -4.0113 -10.9748 49 1 2.0740 -1.2909 -4.0271 50 1 0.7062 -2.4158 -4.2132 51 1 0.7209 -2.8482 -1.7768 52 1 0.5235 -1.1101 -2.1059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777389342.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:36 Heat of formation + Delta-G solvation = -15.692878 kcal Electronic energy + Delta-G solvation = -29971.218967 eV Core-core repulsion = 26127.573656 eV Total energy + Delta-G solvation = -3843.645312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.90533 -38.80059 -37.50947 -36.12894 -34.06666 -33.80172 -31.94737 -30.98524 -30.86175 -29.16722 -27.51604 -27.15561 -25.92246 -24.82028 -23.29489 -22.74225 -20.89629 -20.52110 -20.08934 -19.33138 -18.69779 -17.69713 -16.68079 -16.18238 -15.57756 -15.48693 -15.08601 -14.96962 -14.75974 -14.40256 -14.15467 -14.02155 -13.83084 -13.63431 -13.42544 -13.15283 -13.04851 -12.98097 -12.38605 -12.26234 -12.07621 -11.97053 -11.80081 -11.69645 -11.54824 -11.34868 -11.19994 -11.17025 -11.06238 -10.82027 -10.68354 -10.54378 -10.42469 -10.35673 -9.60640 -9.36455 -9.33662 -9.13785 -8.91357 -8.65665 -8.50448 -7.50947 -7.45972 -7.07869 -4.37362 1.92331 2.79712 2.89478 3.18520 3.31999 3.35678 3.40354 3.63774 3.80625 4.05898 4.49433 4.62747 4.63952 4.65909 4.85260 4.94667 5.14044 5.18711 5.22813 5.33654 5.38287 5.39606 5.43760 5.49440 5.53725 5.58433 5.67955 5.70993 5.76654 5.76806 5.86119 5.94849 5.98922 6.05754 6.20848 6.22857 6.33997 6.37003 6.37887 6.41010 6.56793 6.73350 6.84613 6.88445 6.91966 7.04660 7.25716 7.46904 7.72441 7.87474 7.90737 7.97923 8.01541 8.25823 8.39586 8.83647 8.89841 8.97531 10.11614 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.002942 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.757930 B = 9515.030938 C =11186.670920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.088 3.912 5 N -0.533 5.533 6 C 0.061 3.939 7 C -0.122 4.122 8 C 0.147 3.853 9 N -0.741 5.741 10 C 0.516 3.484 11 O -0.522 6.522 12 C -0.070 4.070 13 C -0.184 4.184 14 C -0.069 4.069 15 C -0.254 4.254 16 C -0.087 4.087 17 C -0.217 4.217 18 C 0.116 3.884 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.800 5.800 23 Si 1.059 2.941 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.127 4.127 28 C 0.056 3.944 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.395 0.605 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.299 0.701 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.033 0.967 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.608 6.996 17.910 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.115 4.115 3 C -0.168 4.168 4 C -0.040 4.040 5 N -0.258 5.258 6 C -0.067 4.067 7 C -0.160 4.160 8 C 0.042 3.958 9 N -0.394 5.394 10 C 0.303 3.697 11 O -0.395 6.395 12 C -0.110 4.110 13 C -0.185 4.185 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.236 4.236 18 C 0.114 3.886 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.423 5.423 23 Si 0.883 3.117 24 H -0.199 1.199 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.166 4.166 28 C -0.072 4.072 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.228 0.772 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.051 0.949 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.042 8.117 17.312 20.376 hybrid contribution 0.944 -1.775 0.847 2.182 sum 7.987 6.342 18.159 20.827 Atomic orbital electron populations 1.23753 0.95321 1.01957 1.02137 1.21623 0.95036 0.95639 0.99173 1.20774 0.99680 0.93984 1.02392 1.21145 0.99178 0.93824 0.89806 1.61945 1.14921 1.37800 1.11099 1.22012 0.96123 0.91727 0.96883 1.21848 0.97476 1.02189 0.94471 1.20852 0.94616 0.98418 0.81938 1.46186 1.27616 1.54726 1.10865 1.21191 0.83497 0.76987 0.88016 1.90674 1.23876 1.47736 1.77249 1.20249 0.98137 1.01866 0.90760 1.19019 0.97224 0.92763 1.09527 1.20352 0.97379 0.93251 0.97789 1.20257 0.99246 0.97337 1.10474 1.20597 0.96386 0.94943 0.98584 1.21138 1.00560 0.92974 1.08902 1.17390 0.88927 0.93203 0.89122 1.20436 1.29527 0.93339 1.11104 0.90966 1.26910 0.94591 1.04115 0.92465 1.70451 1.32734 1.21034 1.18091 0.83731 0.77115 0.73972 0.76908 1.19892 1.20049 1.20199 1.21988 1.00455 0.98728 0.95398 1.22141 0.91494 1.00162 0.93445 0.88268 0.88658 0.91065 0.92294 0.92072 0.94317 0.90258 0.94699 0.90443 0.90956 0.90516 0.90206 0.77164 0.90734 0.88695 0.89669 0.89503 0.89431 0.87784 0.88741 0.90990 0.90503 0.94861 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 12.33 29.01 0.36 -1.32 16 2 C -0.11 -1.00 4.96 -101.07 -0.50 -1.50 16 3 C -0.11 -0.85 10.03 36.00 0.36 -0.49 16 4 C 0.09 0.77 5.14 -4.98 -0.03 0.74 16 5 N -0.53 -5.41 4.65 -236.11 -1.10 -6.50 16 6 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 7 C -0.12 -1.19 5.57 -26.65 -0.15 -1.34 16 8 C 0.15 1.97 2.52 -67.81 -0.17 1.80 16 9 N -0.74 -10.78 5.08 -53.69 -0.27 -11.06 16 10 C 0.52 10.08 7.43 -10.99 -0.08 9.99 16 11 O -0.52 -12.59 15.70 5.56 0.09 -12.50 16 12 C -0.07 -1.39 5.18 -29.03 -0.15 -1.54 16 13 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 14 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 16 15 C -0.25 -5.94 10.05 -39.29 -0.39 -6.34 16 16 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 17 C -0.22 -5.78 7.95 -38.87 -0.31 -6.09 16 18 C 0.12 3.12 5.30 -106.82 -0.57 2.56 16 19 C -0.52 -13.70 8.08 -37.74 -0.30 -14.00 16 20 H 0.07 1.89 6.73 -52.49 -0.35 1.53 16 21 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 22 N -0.80 -21.39 12.31 55.55 0.68 -20.71 16 23 Si 1.06 22.21 30.00 -169.99 -5.10 17.11 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.13 -1.75 5.67 -26.65 -0.15 -1.90 16 28 C 0.06 0.66 5.20 -3.83 -0.02 0.64 16 29 H 0.10 0.77 8.04 -52.49 -0.42 0.35 16 30 H 0.10 0.83 7.99 -52.48 -0.42 0.41 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.39 8.06 -51.92 -0.42 -0.03 16 33 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 35 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.59 8.01 -51.93 -0.42 0.17 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.26 7.57 -51.94 -0.39 0.87 16 41 H 0.40 4.55 8.61 -40.82 -0.35 4.20 16 42 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 43 H 0.09 1.86 7.06 -51.93 -0.37 1.49 16 44 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 47 H 0.10 2.85 6.49 -52.49 -0.34 2.51 16 48 H 0.30 8.19 6.68 -40.82 -0.27 7.92 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 51 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.08 0.96 6.06 -51.93 -0.31 0.65 16 LS Contribution 413.52 15.07 6.23 6.23 Total: -1.00 -30.88 413.52 -11.68 -42.56 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -8.76 Total: 11.58 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -3.45 Total: -26.71 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.69 Total: -38.27 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.88 -11.68 -42.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777389342.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.868 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds