Wall clock time and date at job start Wed Apr 1 2020 02:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 C 1.52999 * 109.46970 * 240.00623 * 2 1 3 5 5 Si 1.86298 * 109.47361 * 120.00334 * 2 1 3 6 6 C 1.86297 * 109.46937 * 299.99943 * 5 2 1 7 7 C 1.86300 * 109.47066 * 179.97438 * 5 2 1 8 8 O 1.63095 * 109.47199 * 60.00080 * 5 2 1 9 9 C 1.42899 * 114.00270 * 180.02562 * 8 5 2 10 10 H 1.09003 * 109.53182 * 329.90084 * 9 8 5 11 11 C 1.53123 * 109.50106 * 89.99710 * 9 8 5 12 12 C 1.53118 * 109.15585 * 177.59850 * 11 9 8 13 13 C 1.53036 * 109.28007 * 302.34276 * 12 11 9 14 14 N 1.46846 * 109.52162 * 59.18140 * 13 12 11 15 15 C 1.46909 * 111.00243 * 174.15828 * 14 13 12 16 16 C 1.50701 * 109.46842 * 66.04838 * 15 14 13 17 17 O 1.21300 * 119.99661 * 359.97438 * 16 15 14 18 18 N 1.34768 * 120.00133 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00141 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99575 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00141 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47519 * 89.99888 * 23 21 19 25 25 H 1.48509 * 109.46664 * 209.99945 * 23 21 19 26 26 H 1.48496 * 109.46919 * 329.99260 * 23 21 19 27 27 C 1.46846 * 111.19997 * 298.26076 * 14 13 12 28 28 H 1.08998 * 109.46669 * 299.99792 * 1 2 3 29 29 H 1.09004 * 109.47485 * 59.99682 * 1 2 3 30 30 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47030 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47213 * 300.00264 * 3 2 1 33 33 H 1.09001 * 109.46553 * 60.00254 * 3 2 1 34 34 H 1.09002 * 109.47171 * 299.99699 * 4 2 1 35 35 H 1.08995 * 109.47446 * 59.99633 * 4 2 1 36 36 H 1.09003 * 109.47102 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.46887 * 180.02562 * 6 5 2 38 38 H 1.09002 * 109.47471 * 299.99935 * 6 5 2 39 39 H 1.09003 * 109.47181 * 59.99941 * 6 5 2 40 40 H 1.09006 * 109.47058 * 299.99983 * 7 5 2 41 41 H 1.09004 * 109.47392 * 59.99831 * 7 5 2 42 42 H 1.08995 * 109.47041 * 179.97438 * 7 5 2 43 43 H 1.08993 * 109.52379 * 57.69454 * 11 9 8 44 44 H 1.08997 * 109.57561 * 297.53086 * 11 9 8 45 45 H 1.09008 * 109.50062 * 182.40805 * 12 11 9 46 46 H 1.09002 * 109.53946 * 62.30558 * 12 11 9 47 47 H 1.08998 * 109.46728 * 299.16963 * 13 12 11 48 48 H 1.09003 * 109.45634 * 179.19307 * 13 12 11 49 49 H 1.09000 * 109.47118 * 186.04432 * 15 14 13 50 50 H 1.08998 * 109.47002 * 306.05017 * 15 14 13 51 51 H 0.97004 * 120.00014 * 0.02562 * 18 16 15 52 52 H 0.97001 * 119.99884 * 180.02562 * 22 21 19 53 53 H 1.08999 * 109.46373 * 181.76104 * 27 14 13 54 54 H 1.08998 * 109.45881 * 301.72191 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 14 2.1511 -0.8783 1.5210 6 6 1.5301 -0.0001 3.0422 7 6 4.0140 -0.8789 1.5206 8 8 1.6075 -2.4160 1.5210 9 6 2.0287 -3.1815 2.6517 10 1 2.9978 -2.8201 2.9959 11 6 1.0006 -3.0385 3.7775 12 6 1.4286 -3.9087 4.9624 13 6 1.5611 -5.3617 4.5004 14 7 2.5563 -5.4455 3.4238 15 6 2.8111 -6.8432 3.0500 16 6 1.5680 -7.4336 2.4359 17 8 0.5680 -6.7567 2.3213 18 7 1.5671 -8.7138 2.0149 19 6 0.4360 -9.2511 1.4567 20 1 -0.4544 -8.6485 1.3546 21 6 0.4353 -10.5709 1.0222 22 7 -0.6491 -11.0860 0.4876 23 14 1.9751 -11.6134 1.1993 24 1 1.9556 -12.3063 2.5125 25 1 2.0191 -12.6205 0.1087 26 1 3.1748 -10.7421 1.1170 27 6 2.1438 -4.6554 2.2567 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7207 -1.2496 37 1 1.8939 -0.5138 3.9322 38 1 1.8934 1.0276 3.0423 39 1 0.4401 -0.0001 3.0422 40 1 4.3770 -1.3930 0.6305 41 1 4.3778 0.1486 1.5203 42 1 4.3774 -1.3924 2.4107 43 1 0.0230 -3.3634 3.4214 44 1 0.9459 -1.9964 4.0919 45 1 0.6786 -3.8446 5.7507 46 1 2.3881 -3.5592 5.3435 47 1 0.5979 -5.7153 4.1328 48 1 1.8797 -5.9815 5.3385 49 1 3.6271 -6.8833 2.3284 50 1 3.0833 -7.4130 3.9384 51 1 2.3665 -9.2554 2.1075 52 1 -0.6498 -12.0074 0.1846 53 1 2.8854 -4.7625 1.4652 54 1 1.1778 -5.0123 1.8997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844335555.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:06 Heat of formation + Delta-G solvation = -141.672251 kcal Electronic energy + Delta-G solvation = -29497.615321 eV Core-core repulsion = 25704.404662 eV Total energy + Delta-G solvation = -3793.210660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.213 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15039 -39.40188 -37.14026 -36.80628 -35.88982 -33.90799 -33.65792 -30.63490 -29.51717 -29.12989 -28.72847 -27.80210 -27.39136 -26.31641 -23.90783 -23.62600 -21.34166 -20.99912 -20.36466 -20.08260 -17.81447 -17.74801 -17.03492 -16.74979 -16.25518 -15.93152 -15.71198 -15.49850 -15.20837 -15.04743 -14.81766 -14.77665 -14.61926 -14.37665 -14.13465 -13.93327 -13.60901 -13.54445 -13.43256 -13.27733 -13.09386 -13.00225 -12.93982 -12.85535 -12.74769 -12.45147 -12.43063 -12.34847 -12.16199 -12.01425 -11.77622 -11.70004 -11.66342 -11.55276 -11.41246 -11.11526 -10.99427 -10.93644 -10.22425 -10.20514 -10.00263 -9.02388 -8.43317 -6.03618 1.29422 1.34172 1.43540 1.56269 1.83565 1.92116 2.19199 2.21722 2.53461 2.97326 3.10197 3.14020 3.87436 3.94249 4.05677 4.14818 4.14989 4.23631 4.28514 4.32145 4.49976 4.56039 4.58399 4.65527 4.75709 4.81151 4.82292 4.83344 4.83947 4.85198 4.87915 4.99104 5.01131 5.02998 5.09671 5.11728 5.12272 5.18977 5.23998 5.28129 5.35712 5.41910 5.44204 5.50630 5.51771 5.65000 5.66972 5.69917 5.90864 6.03421 6.15046 6.56794 6.87503 7.38048 7.95380 8.74511 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002729 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.996364 B =10257.052331 C =11021.026271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.377 4.377 3 C -0.136 4.136 4 C -0.137 4.137 5 Si 1.278 2.722 6 C -0.507 4.507 7 C -0.506 4.506 8 O -0.648 6.648 9 C 0.132 3.868 10 H 0.084 0.916 11 C -0.156 4.156 12 C -0.105 4.105 13 C 0.033 3.967 14 N -0.496 5.496 15 C 0.045 3.955 16 C 0.416 3.584 17 O -0.610 6.610 18 N -0.589 5.589 19 C -0.327 4.327 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.230 1.230 27 C 0.031 3.969 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.024 0.976 48 H 0.086 0.914 49 H 0.120 0.880 50 H 0.127 0.873 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.069 0.931 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.885 22.700 6.558 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.420 4.420 3 C -0.193 4.193 4 C -0.194 4.194 5 Si 1.411 2.589 6 C -0.609 4.609 7 C -0.609 4.609 8 O -0.607 6.607 9 C 0.075 3.925 10 H 0.101 0.899 11 C -0.194 4.194 12 C -0.143 4.143 13 C -0.095 4.095 14 N -0.219 5.219 15 C -0.087 4.087 16 C 0.203 3.797 17 O -0.496 6.496 18 N -0.230 5.230 19 C -0.457 4.457 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.153 1.153 27 C -0.097 4.097 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.043 0.957 48 H 0.104 0.896 49 H 0.138 0.862 50 H 0.145 0.855 51 H 0.225 0.775 52 H 0.088 0.912 53 H 0.087 0.913 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.385 23.017 6.406 27.385 hybrid contribution -0.842 -1.303 -0.894 1.791 sum 12.543 21.714 5.512 25.675 Atomic orbital electron populations 1.21529 0.94661 1.01078 1.02097 1.25790 1.00051 1.03587 1.12552 1.21574 1.01421 0.93780 1.02487 1.21536 1.01192 0.99493 0.97216 0.76916 0.63654 0.52958 0.65349 1.27103 1.06650 1.09976 1.17221 1.26947 1.24213 1.05263 1.04484 1.85342 1.79871 1.47252 1.48209 1.21396 0.96769 0.90530 0.83777 0.89880 1.22389 0.98967 1.02114 0.95912 1.21512 1.03107 0.92739 0.96916 1.22360 0.94434 0.98718 0.93972 1.62482 1.43517 1.07564 1.08355 1.22335 0.93888 0.89629 1.02806 1.22394 0.92270 0.82083 0.82909 1.90486 1.37809 1.60307 1.61029 1.42251 1.12893 1.12025 1.55879 1.18995 0.92084 0.96652 1.37922 0.92988 1.26160 1.01889 0.97790 0.95679 1.69816 1.30523 1.16031 1.41272 0.85354 0.78107 0.78686 0.79315 1.18028 1.20165 1.15311 1.22388 1.01273 0.93188 0.92871 0.91690 0.92801 0.94089 0.91457 0.92772 0.91390 0.94015 0.92788 0.91710 0.90483 0.89465 0.91332 0.91506 0.89451 0.91001 0.93772 0.88454 0.89938 0.89026 0.95740 0.89588 0.86226 0.85512 0.77473 0.91181 0.91291 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 7.85 71.98 0.56 -2.16 16 2 C -0.38 -6.79 0.53 -10.79 -0.01 -6.79 16 3 C -0.14 -1.83 7.85 71.98 0.56 -1.27 16 4 C -0.14 -2.74 7.85 71.98 0.56 -2.18 16 5 Si 1.28 23.04 8.07 68.60 0.55 23.59 16 6 C -0.51 -7.78 7.45 113.37 0.84 -6.93 16 7 C -0.51 -8.16 8.56 113.37 0.97 -7.19 16 8 O -0.65 -17.66 8.28 -148.98 -1.23 -18.89 16 9 C 0.13 3.56 2.31 30.65 0.07 3.63 16 10 H 0.08 1.81 6.16 -2.39 -0.01 1.79 16 11 C -0.16 -4.00 5.37 30.67 0.16 -3.83 16 12 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 13 C 0.03 0.99 5.10 86.33 0.44 1.43 16 14 N -0.50 -14.95 4.86 -900.93 -4.38 -19.33 16 15 C 0.05 1.38 5.86 85.56 0.50 1.88 16 16 C 0.42 18.53 7.20 87.66 0.63 19.16 16 17 O -0.61 -32.96 11.20 -3.09 -0.03 -32.99 16 18 N -0.59 -27.77 5.09 -306.99 -1.56 -29.34 16 19 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 22 N -0.94 -57.10 13.96 21.66 0.30 -56.80 16 23 Si 0.97 39.04 27.74 68.60 1.90 40.94 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 27 C 0.03 1.05 4.63 86.32 0.40 1.45 16 28 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.04 0.98 7.97 -2.39 -0.02 0.96 16 31 H 0.07 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.75 7.79 -2.39 -0.02 0.73 16 34 H 0.04 0.99 7.97 -2.39 -0.02 0.97 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 37 H 0.08 1.12 6.41 -2.38 -0.02 1.10 16 38 H 0.09 1.03 7.79 -2.39 -0.02 1.01 16 39 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 40 H 0.07 1.16 7.79 -2.38 -0.02 1.14 16 41 H 0.09 1.09 7.79 -2.38 -0.02 1.07 16 42 H 0.07 1.13 7.10 -2.39 -0.02 1.11 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.95 4.86 -2.39 -0.01 1.93 16 45 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.02 0.97 6.00 -2.39 -0.01 0.96 16 48 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 49 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 50 H 0.13 3.06 8.06 -2.39 -0.02 3.04 16 51 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 52 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 53 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 54 H 0.05 2.10 5.36 -2.39 -0.01 2.08 16 Total: -1.00 -76.62 409.08 3.04 -73.58 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: 0.27 Total: 43.18 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 7.22 Total: -23.94 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -5.64 Total: -105.46 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -1.27 Total: -51.89 kcal Atomic # 14 Polarization: 62.07 SS G_CDS: 2.46 Total: 64.53 kcal Total: -76.62 3.04 -73.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844335555.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.091 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds