Wall clock time and date at job start Wed Apr 1 2020 02:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47315 * 2 1 4 4 C 1.53006 * 109.47271 * 240.00257 * 2 1 3 5 5 Si 1.86303 * 109.47189 * 120.00264 * 2 1 3 6 6 C 1.86303 * 109.46964 * 304.94900 * 5 2 1 7 7 C 1.86302 * 109.47200 * 184.95206 * 5 2 1 8 8 O 1.63097 * 109.47054 * 64.95020 * 5 2 1 9 9 C 1.42900 * 113.99913 * 175.10419 * 8 5 2 10 10 C 1.53001 * 109.47476 * 184.76854 * 9 8 5 11 11 H 1.08999 * 109.88291 * 187.12655 * 10 9 8 12 12 C 1.54321 * 110.01699 * 308.24433 * 10 9 8 13 13 C 1.55153 * 103.01588 * 141.76448 * 12 10 9 14 14 C 1.54902 * 101.65126 * 324.34270 * 13 12 10 15 15 N 1.47446 * 109.88932 * 66.09310 * 10 9 8 16 16 C 1.46898 * 110.99732 * 3.69273 * 15 10 9 17 17 C 1.50704 * 109.46912 * 172.89700 * 16 15 10 18 18 O 1.21292 * 119.99841 * 4.60692 * 17 16 15 19 19 N 1.34774 * 120.00305 * 184.60246 * 17 16 15 20 20 C 1.37097 * 120.00398 * 185.03020 * 19 17 16 21 21 H 1.07999 * 119.99890 * 5.03784 * 20 19 17 22 22 C 1.38943 * 120.00099 * 185.03302 * 20 19 17 23 23 N 1.31417 * 120.00172 * 354.97954 * 22 20 19 24 24 Si 1.86799 * 120.00139 * 174.98100 * 22 20 19 25 25 H 1.48500 * 109.47230 * 94.99844 * 24 22 20 26 26 H 1.48498 * 109.47622 * 214.99802 * 24 22 20 27 27 H 1.48504 * 109.47138 * 335.00045 * 24 22 20 28 28 H 1.09002 * 109.47475 * 299.99703 * 1 2 3 29 29 H 1.09001 * 109.47401 * 59.99926 * 1 2 3 30 30 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47230 * 184.98360 * 3 2 1 32 32 H 1.08994 * 109.46893 * 304.98581 * 3 2 1 33 33 H 1.08999 * 109.47029 * 64.98545 * 3 2 1 34 34 H 1.09001 * 109.46949 * 304.97236 * 4 2 1 35 35 H 1.08994 * 109.47005 * 64.96996 * 4 2 1 36 36 H 1.08999 * 109.47090 * 184.97763 * 4 2 1 37 37 H 1.08994 * 109.46862 * 179.97438 * 6 5 2 38 38 H 1.08993 * 109.47251 * 300.00154 * 6 5 2 39 39 H 1.09000 * 109.46810 * 60.00216 * 6 5 2 40 40 H 1.08999 * 109.47102 * 304.94744 * 7 5 2 41 41 H 1.08997 * 109.47372 * 64.94320 * 7 5 2 42 42 H 1.09000 * 109.47092 * 184.95157 * 7 5 2 43 43 H 1.08995 * 109.47358 * 64.76238 * 9 8 5 44 44 H 1.09008 * 109.47177 * 304.76780 * 9 8 5 45 45 H 1.08997 * 110.70426 * 260.14162 * 12 10 9 46 46 H 1.09000 * 110.70839 * 23.20894 * 12 10 9 47 47 H 1.09004 * 110.98557 * 206.25408 * 13 12 10 48 48 H 1.08994 * 110.98621 * 82.43529 * 13 12 10 49 49 H 1.08997 * 110.37595 * 278.24214 * 14 13 12 50 50 H 1.08999 * 110.36910 * 155.89545 * 14 13 12 51 51 H 1.08998 * 109.47509 * 292.89641 * 16 15 10 52 52 H 1.08998 * 109.47395 * 52.90062 * 16 15 10 53 53 H 0.97008 * 119.99663 * 5.03080 * 19 17 16 54 54 H 0.97001 * 120.00062 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1509 -0.8783 1.5211 6 6 1.4093 -0.0920 3.0385 7 6 4.0078 -0.7481 1.5988 8 8 1.7183 -2.4495 1.4563 9 6 2.2412 -3.2409 2.5252 10 6 1.8737 -4.7089 2.3000 11 1 2.1580 -5.3000 3.1706 12 6 0.3570 -4.8412 2.0481 13 6 0.2786 -5.9416 0.9572 14 6 1.5422 -5.6373 0.1145 15 7 2.5620 -5.2199 1.1003 16 6 3.4569 -4.2023 0.5333 17 6 4.2694 -4.8120 -0.5799 18 8 4.0597 -5.9548 -0.9280 19 7 5.2291 -4.0875 -1.1886 20 6 5.8976 -4.6047 -2.2680 21 1 5.6009 -5.5574 -2.6812 22 6 6.9568 -3.9031 -2.8306 23 7 7.2550 -2.7006 -2.3922 24 14 7.9568 -4.6690 -4.2099 25 1 7.4237 -4.2144 -5.5193 26 1 9.3766 -4.2527 -4.0822 27 1 7.8653 -6.1488 -4.1250 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 1.4438 -0.0893 32 1 1.6055 1.9814 -0.8419 33 1 1.7514 1.9299 0.9313 34 1 1.6057 -1.7199 -1.2950 35 1 1.7512 -0.1585 -2.1370 36 1 3.1263 -0.7991 -1.2058 37 1 1.7723 -0.6061 3.9284 38 1 1.6983 0.9580 3.0818 39 1 0.3229 -0.1682 2.9930 40 1 4.4378 -1.1284 0.6723 41 1 4.2937 0.2954 1.7305 42 1 4.3783 -1.3352 2.4391 43 1 1.8172 -2.9010 3.4700 44 1 3.3260 -3.1385 2.5561 45 1 -0.1578 -5.1598 2.9545 46 1 -0.0563 -3.9015 1.6818 47 1 -0.6256 -5.8336 0.3580 48 1 0.3350 -6.9357 1.4006 49 1 1.3430 -4.8301 -0.5903 50 1 1.8700 -6.5321 -0.4146 51 1 2.8647 -3.3760 0.1403 52 1 4.1255 -3.8326 1.3107 53 1 5.4468 -3.2001 -0.8629 54 1 7.9943 -2.2106 -2.7852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844347186.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:57 Heat of formation + Delta-G solvation = -135.521465 kcal Electronic energy + Delta-G solvation = -30705.582278 eV Core-core repulsion = 26912.638337 eV Total energy + Delta-G solvation = -3792.943941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.213 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03680 -39.40088 -37.07186 -36.79550 -35.88096 -33.36682 -32.81094 -30.97552 -29.30352 -29.04573 -28.17600 -27.80799 -27.32854 -25.98212 -25.65964 -22.22029 -21.32474 -20.56775 -20.24499 -19.72083 -18.25498 -17.64702 -16.83933 -16.62892 -16.18032 -15.91759 -15.82334 -15.72910 -15.37296 -14.88795 -14.82660 -14.65538 -14.38648 -14.03486 -13.84662 -13.69153 -13.51250 -13.48431 -13.29854 -13.20317 -13.06902 -12.95148 -12.91134 -12.86289 -12.70393 -12.40128 -12.38713 -12.26403 -12.13757 -12.00805 -11.82574 -11.72357 -11.62663 -11.49133 -11.44252 -11.33509 -11.06577 -10.26592 -10.19000 -9.99840 -9.96418 -8.95282 -8.44125 -5.91700 1.36175 1.39778 1.53309 1.57495 1.83573 2.11302 2.21230 2.29683 2.55527 2.95798 3.23218 3.49564 3.84911 3.93416 4.12957 4.15068 4.15602 4.31458 4.39422 4.47914 4.49846 4.52268 4.66731 4.68573 4.75185 4.79218 4.80942 4.82556 4.84612 4.87208 4.89356 4.90442 5.01730 5.08520 5.11282 5.11609 5.12886 5.21624 5.24817 5.32983 5.37039 5.42555 5.43210 5.48796 5.53043 5.64077 5.71748 5.71912 5.96740 6.16220 6.32662 6.65346 7.16779 7.60583 8.17452 8.73362 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009692 B = 0.004531 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.382814 B = 6178.548363 C = 7997.896668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.380 4.380 3 C -0.138 4.138 4 C -0.134 4.134 5 Si 1.305 2.695 6 C -0.497 4.497 7 C -0.529 4.529 8 O -0.632 6.632 9 C 0.057 3.943 10 C 0.063 3.937 11 H 0.108 0.892 12 C -0.122 4.122 13 C -0.122 4.122 14 C 0.058 3.942 15 N -0.519 5.519 16 C 0.045 3.955 17 C 0.438 3.562 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.075 0.925 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.988 3.012 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.024 0.976 50 H 0.049 0.951 51 H 0.093 0.907 52 H 0.098 0.902 53 H 0.393 0.607 54 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.164 9.238 13.885 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.423 4.423 3 C -0.195 4.195 4 C -0.191 4.191 5 Si 1.435 2.565 6 C -0.601 4.601 7 C -0.628 4.628 8 O -0.592 6.592 9 C -0.019 4.019 10 C -0.044 4.044 11 H 0.125 0.875 12 C -0.160 4.160 13 C -0.160 4.160 14 C -0.070 4.070 15 N -0.243 5.243 16 C -0.086 4.086 17 C 0.226 3.774 18 O -0.504 6.504 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.812 3.188 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.043 0.957 50 H 0.067 0.933 51 H 0.110 0.890 52 H 0.116 0.884 53 H 0.227 0.773 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.974 7.997 13.547 21.719 hybrid contribution 1.037 1.116 -1.362 2.043 sum -13.937 9.113 12.186 20.635 Atomic orbital electron populations 1.21509 0.93315 1.01771 1.02189 1.25921 1.01079 1.02974 1.12277 1.21573 1.00766 0.94554 1.02594 1.21490 1.00087 0.99667 0.97854 0.76425 0.62173 0.53079 0.64826 1.26803 1.08038 1.08606 1.16615 1.27315 1.26636 1.05025 1.03872 1.85471 1.77722 1.43948 1.52051 1.22766 0.98273 0.91395 0.89449 1.22901 0.94554 0.93215 0.93772 0.87458 1.22724 0.94534 0.99363 0.99395 1.22678 0.96269 0.99725 0.97361 1.22822 0.91132 0.98833 0.94221 1.63359 1.18426 1.36251 1.06295 1.22262 0.96305 0.94545 0.95453 1.21097 0.83391 0.86758 0.86192 1.90459 1.71432 1.19872 1.68610 1.41911 1.33609 1.17595 1.28339 1.19608 1.12893 1.05526 1.07880 0.90650 1.25974 0.97938 0.95937 1.01306 1.69690 1.30558 1.11553 1.44254 0.84985 0.77694 0.78226 0.77861 1.19607 1.19505 1.19991 0.90891 0.93429 0.92756 0.93011 0.92956 0.90684 0.93613 0.93387 0.94042 0.90470 0.90151 0.90171 0.93030 0.90291 0.91011 0.88594 0.92137 0.88722 0.89679 0.90094 0.90793 0.95716 0.93263 0.89009 0.88438 0.77347 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.85 71.98 0.56 -1.83 16 2 C -0.38 -7.94 0.53 -10.79 -0.01 -7.95 16 3 C -0.14 -2.60 7.86 71.98 0.57 -2.03 16 4 C -0.13 -3.72 7.86 71.98 0.57 -3.15 16 5 Si 1.30 24.00 7.95 68.60 0.55 24.55 16 6 C -0.50 -6.69 8.50 113.37 0.96 -5.73 16 7 C -0.53 -12.26 8.45 113.37 0.96 -11.30 16 8 O -0.63 -13.70 5.08 -148.98 -0.76 -14.45 16 9 C 0.06 1.12 4.08 71.98 0.29 1.41 16 10 C 0.06 1.48 3.84 45.26 0.17 1.66 16 11 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 12 C -0.12 -2.42 6.36 31.78 0.20 -2.22 16 13 C -0.12 -3.00 7.08 31.98 0.23 -2.77 16 14 C 0.06 2.04 5.57 86.77 0.48 2.53 16 15 N -0.52 -17.89 4.95 -865.06 -4.28 -22.18 16 16 C 0.05 1.71 4.08 85.56 0.35 2.06 16 17 C 0.44 22.29 7.60 87.66 0.67 22.96 16 18 O -0.62 -36.03 14.24 -3.07 -0.04 -36.07 16 19 N -0.58 -31.15 5.28 -306.99 -1.62 -32.77 16 20 C -0.33 -19.43 9.66 84.04 0.81 -18.62 16 21 H 0.08 4.75 7.20 -2.91 -0.02 4.72 16 22 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 23 N -0.92 -50.97 13.06 21.66 0.28 -50.68 16 24 Si 0.99 44.42 29.56 68.60 2.03 46.45 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.07 1.02 7.55 -2.39 -0.02 1.00 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.03 7.96 -2.38 -0.02 1.01 16 31 H 0.05 1.04 8.07 -2.39 -0.02 1.02 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.05 7.69 -2.39 -0.02 1.03 16 34 H 0.04 1.36 8.07 -2.39 -0.02 1.34 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.28 7.52 -2.39 -0.02 1.26 16 37 H 0.08 0.91 7.74 -2.39 -0.02 0.89 16 38 H 0.08 0.97 7.81 -2.39 -0.02 0.96 16 39 H 0.08 0.98 7.66 -2.39 -0.02 0.96 16 40 H 0.05 1.50 7.64 -2.39 -0.02 1.48 16 41 H 0.08 1.64 7.96 -2.39 -0.02 1.62 16 42 H 0.07 1.53 7.10 -2.39 -0.02 1.51 16 43 H 0.10 1.19 7.68 -2.39 -0.02 1.17 16 44 H 0.06 1.26 4.55 -2.38 -0.01 1.24 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.69 6.92 -2.39 -0.02 1.67 16 47 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.02 0.93 7.67 -2.39 -0.02 0.91 16 50 H 0.05 2.10 7.15 -2.39 -0.02 2.08 16 51 H 0.09 3.28 5.15 -2.39 -0.01 3.27 16 52 H 0.10 3.32 6.10 -2.39 -0.01 3.31 16 53 H 0.39 20.31 7.92 -92.70 -0.73 19.57 16 54 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -71.83 414.68 3.57 -68.27 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.13 Total: 42.08 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 7.29 Total: -25.18 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -5.62 Total: -105.63 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.80 Total: -50.53 kcal Atomic # 14 Polarization: 68.42 SS G_CDS: 2.57 Total: 71.00 kcal Total: -71.83 3.57 -68.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844347186.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.256 kcal (2) G-P(sol) polarization free energy of solvation -71.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds