Wall clock time and date at job start Wed Apr 1 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47118 * 2 1 4 4 C 1.53004 * 109.47058 * 240.00381 * 2 1 3 5 5 Si 1.86298 * 109.47106 * 120.00142 * 2 1 3 6 6 C 1.86296 * 109.47138 * 299.99705 * 5 2 1 7 7 C 1.86304 * 109.46908 * 179.97438 * 5 2 1 8 8 O 1.63096 * 109.47141 * 60.00027 * 5 2 1 9 9 C 1.42904 * 114.00136 * 179.97438 * 8 5 2 10 10 C 1.52991 * 109.47215 * 179.97438 * 9 8 5 11 11 H 1.08998 * 110.46364 * 172.58755 * 10 9 8 12 12 C 1.54382 * 110.41325 * 50.17517 * 10 9 8 13 13 C 1.54260 * 105.06077 * 217.37004 * 12 10 9 14 14 C 1.54382 * 105.06031 * 359.97438 * 13 12 10 15 15 N 1.48553 * 104.59472 * 23.85737 * 14 13 12 16 16 C 1.46906 * 111.00013 * 200.95755 * 15 14 13 17 17 C 1.50699 * 109.47140 * 285.41814 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00466 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00303 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46948 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46809 * 120.00147 * 24 22 20 27 27 H 1.48497 * 109.47378 * 239.99941 * 24 22 20 28 28 H 1.09005 * 109.46940 * 300.00296 * 1 2 3 29 29 H 1.08999 * 109.47373 * 59.99644 * 1 2 3 30 30 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47478 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47205 * 299.99993 * 3 2 1 33 33 H 1.09001 * 109.46983 * 60.00087 * 3 2 1 34 34 H 1.09009 * 109.46459 * 300.00227 * 4 2 1 35 35 H 1.08996 * 109.47354 * 59.99374 * 4 2 1 36 36 H 1.08990 * 109.46995 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.47211 * 180.02562 * 6 5 2 38 38 H 1.08997 * 109.47421 * 300.00156 * 6 5 2 39 39 H 1.09003 * 109.47165 * 60.00020 * 6 5 2 40 40 H 1.09001 * 109.47294 * 300.00014 * 7 5 2 41 41 H 1.08997 * 109.47120 * 60.00169 * 7 5 2 42 42 H 1.08999 * 109.47175 * 180.02562 * 7 5 2 43 43 H 1.09004 * 109.46814 * 59.99528 * 9 8 5 44 44 H 1.08999 * 109.46782 * 300.00174 * 9 8 5 45 45 H 1.09001 * 110.32200 * 336.25826 * 12 10 9 46 46 H 1.08997 * 110.32575 * 98.47032 * 12 10 9 47 47 H 1.08997 * 110.32864 * 118.89312 * 13 12 10 48 48 H 1.09002 * 110.32382 * 240.99958 * 13 12 10 49 49 H 1.09003 * 110.40968 * 265.07444 * 14 13 12 50 50 H 1.08999 * 110.40985 * 142.63703 * 14 13 12 51 51 H 1.09004 * 109.47040 * 45.41752 * 16 15 14 52 52 H 1.09000 * 109.47033 * 165.41705 * 16 15 14 53 53 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 54 54 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5301 0.0000 3.0422 7 6 4.0141 -0.8789 1.5206 8 8 1.6074 -2.4159 1.5211 9 6 2.0295 -3.1817 2.6513 10 6 1.4636 -4.5993 2.5470 11 1 1.8799 -5.2343 3.3290 12 6 1.7598 -5.1962 1.1544 13 6 0.5040 -6.0167 0.7947 14 6 -0.4450 -5.8472 2.0005 15 7 -0.0189 -4.5738 2.6360 16 6 -0.4615 -4.5098 4.0353 17 6 -1.9432 -4.2386 4.0816 18 8 -2.5689 -4.1116 3.0504 19 7 -2.5728 -4.1372 5.2690 20 6 -3.9208 -3.8909 5.3111 21 1 -4.4781 -3.7778 4.3929 22 6 -4.5702 -3.7869 6.5351 23 7 -3.8922 -3.9250 7.6524 24 14 -6.4068 -3.4507 6.5926 25 1 -6.9329 -3.3377 5.2084 26 1 -7.0925 -4.5663 7.2928 27 1 -6.6551 -2.1813 7.3221 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 1.8939 -0.5136 3.9322 38 1 1.8935 1.0276 3.0423 39 1 0.4401 0.0000 3.0423 40 1 4.3771 -1.3930 0.6306 41 1 4.3778 0.1486 1.5205 42 1 4.3775 -1.3931 2.4104 43 1 1.6655 -2.7118 3.5650 44 1 3.1184 -3.2255 2.6743 45 1 1.9130 -4.3999 0.4260 46 1 2.6354 -5.8438 1.1984 47 1 0.0409 -5.6232 -0.1102 48 1 0.7636 -7.0669 0.6604 49 1 -0.3271 -6.6776 2.6967 50 1 -1.4791 -5.7764 1.6634 51 1 -0.2505 -5.4595 4.5269 52 1 0.0707 -3.7089 4.5485 53 1 -2.0724 -4.2391 6.0936 54 1 -4.3454 -3.8520 8.5069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844347187.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:00 Heat of formation + Delta-G solvation = -145.172478 kcal Electronic energy + Delta-G solvation = -29521.508932 eV Core-core repulsion = 25728.146491 eV Total energy + Delta-G solvation = -3793.362441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.213 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66112 -39.34364 -37.15001 -36.75501 -35.89935 -33.40487 -32.87408 -30.90293 -29.29640 -28.99504 -28.24755 -27.77194 -27.31975 -26.17772 -25.49262 -22.10205 -21.02346 -20.89221 -20.26550 -19.85517 -17.80465 -17.65488 -16.69043 -16.59886 -16.33239 -16.08865 -15.78129 -15.57364 -15.55308 -14.81928 -14.74204 -14.58295 -14.41834 -14.23842 -13.86734 -13.68723 -13.54106 -13.47686 -13.30068 -13.11074 -13.05937 -12.91873 -12.89706 -12.86163 -12.84777 -12.39587 -12.34283 -12.22583 -12.13689 -12.06010 -11.92774 -11.68724 -11.59750 -11.47931 -11.34247 -11.21939 -11.02302 -10.27149 -10.14660 -9.98563 -9.96109 -9.17372 -8.45732 -5.93794 1.35480 1.39920 1.54349 1.68398 1.89723 2.09024 2.25885 2.28846 2.63449 2.88211 3.20941 3.44703 3.76921 3.97141 4.18895 4.19001 4.21999 4.31046 4.37490 4.43385 4.48718 4.53613 4.54339 4.60210 4.62634 4.75716 4.77279 4.82249 4.84970 4.88535 4.90099 4.91850 4.99428 5.04841 5.14435 5.14685 5.14947 5.19188 5.26539 5.36203 5.37982 5.41642 5.46575 5.51350 5.56612 5.62045 5.68651 5.73287 5.95722 6.09699 6.28032 6.63621 7.15365 7.59260 8.16582 8.72192 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.003166 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.711795 B = 8840.683098 C = 9987.286208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.378 4.378 3 C -0.137 4.137 4 C -0.131 4.131 5 Si 1.301 2.699 6 C -0.524 4.524 7 C -0.498 4.498 8 O -0.625 6.625 9 C 0.094 3.906 10 C 0.050 3.950 11 H 0.079 0.921 12 C -0.107 4.107 13 C -0.115 4.115 14 C 0.035 3.965 15 N -0.493 5.493 16 C 0.044 3.956 17 C 0.444 3.556 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.329 4.329 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.058 0.942 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.048 0.952 51 H 0.069 0.931 52 H 0.104 0.896 53 H 0.395 0.605 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.248 3.462 -11.387 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.420 4.420 3 C -0.194 4.194 4 C -0.188 4.188 5 Si 1.431 2.569 6 C -0.624 4.624 7 C -0.602 4.602 8 O -0.584 6.584 9 C 0.018 3.982 10 C -0.057 4.057 11 H 0.097 0.903 12 C -0.145 4.145 13 C -0.153 4.153 14 C -0.093 4.093 15 N -0.217 5.217 16 C -0.088 4.088 17 C 0.231 3.769 18 O -0.499 6.499 19 N -0.216 5.216 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.122 0.878 53 H 0.229 0.771 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.353 3.851 -12.277 24.079 hybrid contribution -1.061 0.002 1.442 1.791 sum 19.292 3.852 -10.834 22.459 Atomic orbital electron populations 1.21488 0.95596 1.01010 1.01068 1.25831 0.99099 1.03487 1.13613 1.21579 1.01662 0.94256 1.01891 1.21489 1.01358 0.99718 0.96220 0.76543 0.63902 0.53186 0.63310 1.27275 1.05602 1.10029 1.19466 1.26830 1.22913 1.05311 1.05108 1.85376 1.79797 1.46085 1.47164 1.22060 0.98374 0.91002 0.86746 1.23041 0.87244 0.96174 0.99284 0.90295 1.22217 0.97253 0.99387 0.95603 1.22223 0.95521 1.00797 0.96728 1.23052 0.99664 0.89781 0.96760 1.64984 1.09164 1.34817 1.12778 1.21954 0.92236 1.02502 0.92113 1.20813 0.90490 0.82203 0.83376 1.90486 1.68896 1.56035 1.34458 1.41936 1.08595 1.63911 1.07193 1.19658 0.84971 1.47453 0.93829 0.90646 1.25995 1.04508 0.96761 0.94015 1.69679 1.38258 1.50357 0.98005 0.84908 0.77168 0.78329 0.78156 1.19997 1.19470 1.19586 0.93662 0.92974 0.93895 0.90774 0.92871 0.92702 0.93039 0.93255 0.90996 0.91604 0.90310 0.93533 0.90130 0.90037 0.90702 0.93623 0.89044 0.89761 0.88992 0.92289 0.89658 0.94072 0.93316 0.91280 0.87799 0.77137 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.85 71.98 0.56 -2.86 16 2 C -0.38 -7.45 0.53 -10.79 -0.01 -7.46 16 3 C -0.14 -2.23 7.85 71.98 0.56 -1.66 16 4 C -0.13 -2.34 7.85 71.98 0.56 -1.78 16 5 Si 1.30 24.49 8.45 68.60 0.58 25.07 16 6 C -0.52 -12.15 8.50 113.37 0.96 -11.19 16 7 C -0.50 -6.66 8.50 113.37 0.96 -5.70 16 8 O -0.62 -15.14 7.23 -148.98 -1.08 -16.22 16 9 C 0.09 2.00 4.99 71.98 0.36 2.36 16 10 C 0.05 1.20 2.69 45.06 0.12 1.32 16 11 H 0.08 1.54 7.99 -2.39 -0.02 1.52 16 12 C -0.11 -2.20 6.45 31.49 0.20 -2.00 16 13 C -0.11 -2.81 7.00 31.49 0.22 -2.59 16 14 C 0.04 1.17 5.92 86.45 0.51 1.68 16 15 N -0.49 -16.81 4.63 -861.29 -3.99 -20.79 16 16 C 0.04 1.60 5.27 85.56 0.45 2.05 16 17 C 0.44 22.25 7.63 87.66 0.67 22.92 16 18 O -0.61 -35.82 14.80 -3.06 -0.05 -35.87 16 19 N -0.58 -30.84 5.29 -306.99 -1.62 -32.47 16 20 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.79 13.05 21.66 0.28 -50.50 16 24 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H 0.04 1.19 7.79 -2.38 -0.02 1.17 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.27 7.97 -2.39 -0.02 1.25 16 31 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.05 0.89 7.79 -2.39 -0.02 0.87 16 34 H 0.05 1.02 7.97 -2.38 -0.02 1.01 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.98 7.79 -2.39 -0.02 0.96 16 37 H 0.06 1.46 7.48 -2.38 -0.02 1.44 16 38 H 0.08 1.56 7.79 -2.39 -0.02 1.54 16 39 H 0.05 1.33 7.79 -2.39 -0.02 1.31 16 40 H 0.08 0.97 7.79 -2.39 -0.02 0.95 16 41 H 0.08 0.94 7.79 -2.39 -0.02 0.92 16 42 H 0.07 0.90 7.48 -2.39 -0.02 0.88 16 43 H 0.05 1.03 6.26 -2.39 -0.01 1.02 16 44 H 0.09 1.24 7.21 -2.39 -0.02 1.23 16 45 H 0.08 1.82 6.86 -2.39 -0.02 1.81 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.04 1.26 7.75 -2.39 -0.02 1.24 16 50 H 0.05 2.01 7.24 -2.39 -0.02 2.00 16 51 H 0.07 2.23 7.77 -2.38 -0.02 2.21 16 52 H 0.10 3.38 7.10 -2.39 -0.02 3.36 16 53 H 0.39 19.94 7.90 -92.71 -0.73 19.20 16 54 H 0.28 14.22 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -72.98 424.12 3.71 -69.27 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.12 Total: 38.96 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 7.43 Total: -23.71 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.33 Total: -103.76 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -1.12 Total: -52.09 kcal Atomic # 14 Polarization: 68.73 SS G_CDS: 2.61 Total: 71.33 kcal Total: -72.98 3.71 -69.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844347187.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.898 kcal (2) G-P(sol) polarization free energy of solvation -72.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds