Wall clock time and date at job start Wed Apr 1 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.53005 * 109.47334 * 120.00248 * 2 1 3 5 5 Si 1.86298 * 109.47214 * 239.99973 * 2 1 3 6 6 C 1.86297 * 109.47307 * 179.97438 * 5 2 1 7 7 C 1.86302 * 109.47093 * 300.00028 * 5 2 1 8 8 O 1.63098 * 109.47282 * 59.99809 * 5 2 1 9 9 C 1.42894 * 114.00345 * 180.02562 * 8 5 2 10 10 H 1.08996 * 110.64520 * 29.30343 * 9 8 5 11 11 C 1.54603 * 110.72559 * 266.15145 * 9 8 5 12 12 C 1.53995 * 105.13798 * 219.68640 * 11 9 8 13 13 N 1.47905 * 107.05946 * 358.77075 * 12 11 9 14 14 C 1.46898 * 110.99616 * 145.84882 * 13 12 11 15 15 C 1.50702 * 109.46817 * 183.36609 * 14 13 12 16 16 O 1.21286 * 119.99937 * 353.86017 * 15 14 13 17 17 N 1.34779 * 120.00093 * 173.86408 * 15 14 13 18 18 C 1.46499 * 119.99850 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47043 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99892 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00284 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99442 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99902 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47325 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47219 * 120.00163 * 23 21 19 26 26 H 1.48502 * 109.47039 * 239.99589 * 23 21 19 27 27 C 1.48727 * 105.94425 * 25.20526 * 13 12 11 28 28 H 1.08999 * 109.47201 * 60.00103 * 1 2 3 29 29 H 1.09002 * 109.46890 * 300.00040 * 1 2 3 30 30 H 1.09001 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46690 * 59.99833 * 3 2 1 32 32 H 1.08998 * 109.47400 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46871 * 300.00099 * 3 2 1 34 34 H 1.08997 * 109.47246 * 59.99360 * 4 2 1 35 35 H 1.08998 * 109.47293 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.46893 * 300.00264 * 4 2 1 37 37 H 1.09008 * 109.46692 * 60.00333 * 6 5 2 38 38 H 1.09001 * 109.47235 * 179.97438 * 6 5 2 39 39 H 1.08997 * 109.47493 * 299.99844 * 6 5 2 40 40 H 1.08998 * 109.47136 * 59.99874 * 7 5 2 41 41 H 1.09002 * 109.47265 * 179.97438 * 7 5 2 42 42 H 1.08999 * 109.47483 * 300.00133 * 7 5 2 43 43 H 1.09004 * 110.30377 * 338.59894 * 11 9 8 44 44 H 1.08993 * 110.30766 * 100.76776 * 11 9 8 45 45 H 1.08994 * 109.92191 * 118.12640 * 12 11 9 46 46 H 1.09003 * 109.91647 * 239.22381 * 12 11 9 47 47 H 1.09003 * 109.47180 * 303.36038 * 14 13 12 48 48 H 1.08999 * 109.47309 * 63.36377 * 14 13 12 49 49 H 0.96993 * 119.99751 * 359.97438 * 17 15 14 50 50 H 1.08992 * 109.47732 * 300.00201 * 18 17 15 51 51 H 1.09001 * 109.46893 * 60.00917 * 18 17 15 52 52 H 0.97006 * 119.99277 * 180.02562 * 22 21 19 53 53 H 1.09000 * 110.84243 * 202.57347 * 27 13 12 54 54 H 1.09000 * 110.58530 * 79.38287 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 14 2.1510 -0.8782 -1.5211 6 6 4.0140 -0.8776 -1.5215 7 6 1.5300 -2.6347 -1.5211 8 8 1.6073 -0.1094 -2.8528 9 6 2.0285 -0.7060 -4.0811 10 1 2.1754 -1.7789 -3.9567 11 6 3.3199 -0.0338 -4.6013 12 6 3.1328 0.0702 -6.1263 13 7 1.8232 -0.5387 -6.4454 14 6 1.1812 0.1532 -7.5710 15 6 -0.1829 -0.4399 -7.8131 16 8 -0.5369 -1.4199 -7.1923 17 7 -1.0094 0.1186 -8.7195 18 6 -2.3352 -0.4584 -8.9552 19 6 -3.0533 0.3463 -10.0078 20 1 -2.5705 1.2022 -10.4560 21 6 -4.3270 -0.0094 -10.3979 22 7 -4.9150 -1.0513 -9.8517 23 14 -5.2167 0.9877 -11.7031 24 1 -4.3443 2.1007 -12.1559 25 1 -5.5429 0.1125 -12.8577 26 1 -6.4706 1.5426 -11.1329 27 6 1.0053 -0.4199 -5.2089 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2493 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -0.2075 2.1392 37 1 4.3777 -1.3912 -0.6315 38 1 4.3773 -1.3918 -2.4113 39 1 4.3770 0.1502 -1.5218 40 1 0.4400 -2.6347 -1.5211 41 1 1.8930 -3.1484 -2.4113 42 1 1.8933 -3.1486 -0.6311 43 1 3.4316 0.9590 -4.1653 44 1 4.1878 -0.6503 -4.3678 45 1 3.1397 1.1168 -6.4308 46 1 3.9307 -0.4698 -6.6360 47 1 1.0801 1.2129 -7.3362 48 1 1.7924 0.0360 -8.4658 49 1 -0.7263 0.9025 -9.2156 50 1 -2.2281 -1.4881 -9.2959 51 1 -2.9093 -0.4399 -8.0288 52 1 -5.8110 -1.3017 -10.1264 53 1 0.2058 -1.1607 -5.2000 54 1 0.5991 0.5871 -5.1133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852521991.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:09 Heat of formation + Delta-G solvation = -148.160895 kcal Electronic energy + Delta-G solvation = -28471.330132 eV Core-core repulsion = 24677.838103 eV Total energy + Delta-G solvation = -3793.492028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.213 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96177 -39.58826 -36.96502 -36.80274 -36.05672 -34.34604 -32.42820 -29.79927 -29.45542 -29.18844 -28.96826 -27.80364 -27.38093 -27.02099 -24.45275 -22.34807 -21.80590 -21.30576 -20.36734 -18.97642 -18.17756 -17.55273 -17.21443 -16.74582 -16.56440 -16.13121 -15.79511 -15.58236 -14.97938 -14.87551 -14.76866 -14.65771 -14.48802 -14.22140 -14.12362 -13.92893 -13.83310 -13.70663 -13.44336 -13.29062 -13.23111 -13.02145 -12.93704 -12.89254 -12.86063 -12.75276 -12.52209 -12.37381 -12.27606 -12.19639 -11.89585 -11.71658 -11.62876 -11.45928 -11.39767 -11.09705 -10.81358 -10.61815 -10.27361 -10.02899 -9.80733 -9.37992 -8.29396 -6.45878 1.42819 1.44085 1.48693 1.57584 1.80355 1.81481 2.14841 2.28839 2.46450 2.55153 3.05559 3.17156 3.63650 3.74195 4.02501 4.05154 4.14328 4.14914 4.27725 4.33650 4.44764 4.48361 4.53133 4.66323 4.73360 4.75832 4.83234 4.84204 4.84585 4.87521 4.89243 5.01091 5.01967 5.11264 5.11685 5.11813 5.13192 5.15876 5.23645 5.24906 5.35130 5.42884 5.47792 5.50039 5.53201 5.59721 5.69564 5.70456 5.84722 5.87792 6.02171 6.65861 6.95557 7.23819 7.54161 8.83116 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.002155 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.512793 B =12986.988415 C =13862.935015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.375 4.375 3 C -0.134 4.134 4 C -0.138 4.138 5 Si 1.289 2.711 6 C -0.499 4.499 7 C -0.523 4.523 8 O -0.634 6.634 9 C 0.113 3.887 10 H 0.076 0.924 11 C -0.151 4.151 12 C 0.035 3.965 13 N -0.518 5.518 14 C 0.041 3.959 15 C 0.491 3.509 16 O -0.585 6.585 17 N -0.710 5.710 18 C 0.269 3.731 19 C -0.554 4.554 20 H 0.085 0.915 21 C 0.001 3.999 22 N -0.932 5.932 23 Si 0.986 3.014 24 H -0.252 1.252 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.035 3.965 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.133 0.867 49 H 0.408 0.592 50 H -0.014 1.014 51 H -0.016 1.016 52 H 0.268 0.732 53 H 0.066 0.934 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.749 5.673 18.554 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.418 4.418 3 C -0.191 4.191 4 C -0.195 4.195 5 Si 1.421 2.579 6 C -0.603 4.603 7 C -0.624 4.624 8 O -0.593 6.593 9 C 0.056 3.944 10 H 0.094 0.906 11 C -0.189 4.189 12 C -0.092 4.092 13 N -0.244 5.244 14 C -0.090 4.090 15 C 0.278 3.722 16 O -0.465 6.465 17 N -0.361 5.361 18 C 0.146 3.854 19 C -0.592 4.592 20 H 0.103 0.897 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.809 3.191 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.205 1.205 27 C -0.093 4.093 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.151 0.849 49 H 0.244 0.756 50 H 0.004 0.996 51 H 0.002 0.998 52 H 0.077 0.923 53 H 0.084 0.916 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.218 4.558 18.736 29.418 hybrid contribution -1.264 0.680 -0.297 1.466 sum 20.954 5.238 18.439 28.399 Atomic orbital electron populations 1.21553 0.94972 1.01580 1.01530 1.25762 0.99762 1.03387 1.12913 1.21522 1.01406 0.94603 1.01604 1.21587 1.01643 0.99993 0.96270 0.76729 0.64445 0.59899 0.56801 1.26930 1.22838 1.05286 1.05248 1.27211 1.06289 1.24233 1.04624 1.85357 1.79620 1.67443 1.26842 1.22390 0.93378 0.95953 0.82709 0.90610 1.23063 0.97630 1.03239 0.94957 1.23007 0.90927 0.99298 0.95936 1.64485 1.03718 1.52576 1.03590 1.22215 0.91600 0.97232 0.97958 1.21363 0.87673 0.83893 0.79230 1.90624 1.77568 1.28424 1.49915 1.46184 1.16714 1.32439 1.40758 1.18495 0.79367 0.92962 0.94621 1.21662 1.00989 1.14265 1.22270 0.89727 1.26096 0.98223 0.96279 0.99207 1.70156 1.15164 1.27674 1.44061 0.85097 0.78082 0.78422 0.77524 1.17525 1.20445 1.20529 1.23314 0.96613 1.00497 0.88913 0.93500 0.92601 0.92746 0.92886 0.91257 0.93148 0.92253 0.91050 0.92643 0.89807 0.90830 0.90177 0.92349 0.91881 0.89719 0.88833 0.88128 0.91636 0.88237 0.89554 0.84884 0.75619 0.99616 0.99761 0.92290 0.91574 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.85 71.98 0.56 -2.00 16 2 C -0.37 -5.74 0.53 -10.79 -0.01 -5.75 16 3 C -0.13 -1.95 7.85 71.98 0.56 -1.38 16 4 C -0.14 -1.68 7.85 71.98 0.56 -1.12 16 5 Si 1.29 20.35 8.13 68.60 0.56 20.91 16 6 C -0.50 -5.87 8.22 113.37 0.93 -4.94 16 7 C -0.52 -9.81 8.58 113.37 0.97 -8.84 16 8 O -0.63 -13.98 8.34 -148.98 -1.24 -15.22 16 9 C 0.11 2.59 2.96 31.80 0.09 2.69 16 10 H 0.08 1.68 6.26 -2.39 -0.01 1.67 16 11 C -0.15 -2.46 5.85 31.48 0.18 -2.27 16 12 C 0.04 0.63 6.70 86.45 0.58 1.21 16 13 N -0.52 -14.20 5.11 -887.01 -4.53 -18.73 16 14 C 0.04 1.11 5.31 85.56 0.45 1.56 16 15 C 0.49 19.96 7.46 87.66 0.65 20.61 16 16 O -0.58 -29.52 14.29 -3.05 -0.04 -29.56 16 17 N -0.71 -30.30 5.55 -466.78 -2.59 -32.89 16 18 C 0.27 14.99 5.43 85.63 0.46 15.45 16 19 C -0.55 -30.42 9.28 25.60 0.24 -30.18 16 20 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 21 C 0.00 0.07 5.46 84.66 0.46 0.54 16 22 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 23 Si 0.99 42.66 29.54 68.60 2.03 44.69 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 C 0.03 1.07 5.32 86.61 0.46 1.53 16 28 H 0.05 0.99 7.97 -2.39 -0.02 0.97 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.98 7.79 -2.39 -0.02 0.96 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 33 H 0.05 0.83 7.96 -2.39 -0.02 0.81 16 34 H 0.06 0.68 7.79 -2.39 -0.02 0.66 16 35 H 0.07 0.65 7.79 -2.39 -0.02 0.63 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 0.80 7.79 -2.38 -0.02 0.78 16 38 H 0.07 0.83 6.78 -2.39 -0.02 0.82 16 39 H 0.08 0.84 7.79 -2.39 -0.02 0.82 16 40 H 0.06 1.25 7.79 -2.39 -0.02 1.23 16 41 H 0.06 1.23 7.12 -2.39 -0.02 1.22 16 42 H 0.08 1.29 7.79 -2.39 -0.02 1.27 16 43 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 44 H 0.10 1.19 7.09 -2.39 -0.02 1.17 16 45 H 0.07 0.96 7.68 -2.39 -0.02 0.94 16 46 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.09 1.92 7.99 -2.39 -0.02 1.90 16 48 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16 50 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 51 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 52 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 53 H 0.07 2.59 6.45 -2.39 -0.02 2.57 16 54 H 0.04 1.41 8.01 -2.39 -0.02 1.39 16 Total: -1.00 -75.22 425.11 1.73 -73.49 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.08 Total: 26.89 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 7.18 Total: -12.90 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -6.83 Total: -108.30 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.29 Total: -44.78 kcal Atomic # 14 Polarization: 63.02 SS G_CDS: 2.58 Total: 65.60 kcal Total: -75.22 1.73 -73.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852521991.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.667 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds