Wall clock time and date at job start Wed Apr 1 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47547 * 2 1 4 4 C 1.52999 * 109.47418 * 240.00061 * 2 1 3 5 5 Si 1.86302 * 109.47163 * 119.99979 * 2 1 3 6 6 C 1.86295 * 109.47142 * 300.00070 * 5 2 1 7 7 C 1.86297 * 109.47214 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46776 * 59.99886 * 5 2 1 9 9 C 1.42900 * 113.99547 * 179.97438 * 8 5 2 10 10 H 1.08996 * 110.90804 * 327.58653 * 9 8 5 11 11 C 1.55142 * 110.98837 * 91.45839 * 9 8 5 12 12 C 1.54312 * 103.17714 * 153.82894 * 11 9 8 13 13 N 1.47443 * 107.23612 * 337.62814 * 12 11 9 14 14 C 1.46900 * 111.00227 * 236.74273 * 13 12 11 15 15 C 1.50699 * 109.47247 * 290.12346 * 14 13 12 16 16 O 1.21279 * 119.99885 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00395 * 179.97438 * 15 14 13 18 18 C 1.46495 * 120.00603 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47396 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37879 * 120.00042 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00228 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99833 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47064 * 90.00445 * 23 21 19 25 25 H 1.48499 * 109.46984 * 210.00200 * 23 21 19 26 26 H 1.48501 * 109.46944 * 330.00351 * 23 21 19 27 27 C 1.47844 * 108.56494 * 359.01050 * 13 12 11 28 28 H 1.08995 * 109.47367 * 300.00426 * 1 2 3 29 29 H 1.09011 * 109.47102 * 59.99669 * 1 2 3 30 30 H 1.08996 * 109.47379 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47575 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47008 * 300.00575 * 3 2 1 33 33 H 1.09000 * 109.46711 * 59.99579 * 3 2 1 34 34 H 1.08996 * 109.47086 * 300.00474 * 4 2 1 35 35 H 1.09010 * 109.47250 * 59.99856 * 4 2 1 36 36 H 1.08998 * 109.47723 * 180.02562 * 4 2 1 37 37 H 1.08996 * 109.47347 * 179.97438 * 6 5 2 38 38 H 1.09002 * 109.46829 * 299.99668 * 6 5 2 39 39 H 1.08996 * 109.47010 * 59.99870 * 6 5 2 40 40 H 1.09000 * 109.47545 * 300.00142 * 7 5 2 41 41 H 1.09002 * 109.47323 * 59.99985 * 7 5 2 42 42 H 1.08997 * 109.47088 * 180.02562 * 7 5 2 43 43 H 1.09002 * 110.70816 * 35.35742 * 11 9 8 44 44 H 1.09005 * 110.70106 * 272.29883 * 11 9 8 45 45 H 1.08997 * 109.89327 * 97.03090 * 12 11 9 46 46 H 1.09003 * 109.89220 * 218.21893 * 12 11 9 47 47 H 1.08998 * 109.46669 * 50.12444 * 14 13 12 48 48 H 1.08999 * 109.47032 * 170.11876 * 14 13 12 49 49 H 0.97003 * 119.99334 * 0.02562 * 17 15 14 50 50 H 1.08996 * 109.46862 * 300.00632 * 18 17 15 51 51 H 1.09004 * 109.46657 * 59.99731 * 18 17 15 52 52 H 0.97003 * 119.99839 * 179.97438 * 22 21 19 53 53 H 1.08999 * 110.37744 * 142.93014 * 27 13 12 54 54 H 1.09007 * 110.37325 * 265.15824 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 14 2.1509 -0.8782 1.5211 6 6 1.5299 0.0000 3.0422 7 6 4.0139 -0.8789 1.5208 8 8 1.6072 -2.4160 1.5211 9 6 2.0293 -3.1817 2.6514 10 1 3.0164 -2.8656 2.9886 11 6 0.9932 -3.0907 3.8025 12 6 1.2154 -4.4048 4.5803 13 7 1.8513 -5.3590 3.6534 14 6 1.0566 -6.5890 3.5369 15 6 1.1363 -7.3628 4.8276 16 8 1.7910 -6.9322 5.7533 17 7 0.4800 -8.5332 4.9534 18 6 0.5579 -9.2856 6.2079 19 6 -0.2574 -10.5474 6.0884 20 1 -0.7816 -10.7666 5.1700 21 6 -0.3350 -11.4213 7.1520 22 7 -1.0470 -12.5222 7.0479 23 14 0.5711 -11.0417 8.7408 24 1 -0.3138 -10.2590 9.6405 25 1 0.9554 -12.3120 9.4071 26 1 1.7920 -10.2525 8.4379 27 6 2.0087 -4.7033 2.3377 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2490 37 1 1.8929 -0.5141 3.9322 38 1 1.8933 1.0276 3.0422 39 1 0.4400 0.0000 3.0422 40 1 4.3769 -1.3930 0.6308 41 1 4.3777 0.1486 1.5205 42 1 4.3772 -1.3931 2.4105 43 1 -0.0209 -3.0446 3.4055 44 1 1.1969 -2.2281 4.4370 45 1 1.8694 -4.2248 5.4334 46 1 0.2585 -4.8005 4.9210 47 1 0.0175 -6.3320 3.3309 48 1 1.4483 -7.1989 2.7228 49 1 -0.0434 -8.8776 4.2129 50 1 1.5970 -9.5429 6.4133 51 1 0.1670 -8.6756 7.0223 52 1 -1.1012 -13.1372 7.7961 53 1 2.9462 -5.0072 1.8721 54 1 1.1672 -4.9471 1.6891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852521992.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:12 Heat of formation + Delta-G solvation = -144.125483 kcal Electronic energy + Delta-G solvation = -28187.096376 eV Core-core repulsion = 24393.779336 eV Total energy + Delta-G solvation = -3793.317040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.213 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95188 -39.65819 -36.97824 -36.77988 -36.03673 -34.38602 -32.44470 -30.26953 -29.46889 -29.27408 -28.96142 -27.78773 -27.35374 -26.99372 -24.01074 -22.23766 -22.06247 -21.26213 -20.34946 -19.10321 -18.29417 -17.60495 -17.38029 -16.83096 -16.47311 -15.99616 -15.79544 -15.46209 -15.07889 -14.89864 -14.77700 -14.74233 -14.56954 -14.39368 -14.22492 -14.05353 -13.91260 -13.62647 -13.41460 -13.27750 -13.24688 -13.12674 -13.03084 -12.90018 -12.86693 -12.69400 -12.46834 -12.36852 -12.34594 -11.93251 -11.85586 -11.68633 -11.64727 -11.61706 -11.36637 -11.15185 -10.91340 -10.70658 -10.27853 -10.01431 -9.88301 -9.28455 -8.39568 -6.46292 1.32704 1.35107 1.46589 1.47986 1.79578 1.83912 2.14721 2.28147 2.33846 2.56112 2.95799 3.12315 3.64118 3.69489 4.00892 4.03288 4.13147 4.17631 4.18638 4.34319 4.43453 4.47279 4.53155 4.68819 4.72973 4.77761 4.80114 4.81956 4.83268 4.87721 4.87957 4.88477 4.95774 5.04842 5.05190 5.06693 5.14223 5.14345 5.17051 5.26115 5.27474 5.38289 5.46105 5.49908 5.55687 5.57935 5.64261 5.69779 5.88407 6.02094 6.12402 6.55076 6.90645 7.17150 7.47986 8.75072 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.030236 B = 0.001841 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.825079 B =15203.533893 C =15458.186545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.375 4.375 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.303 2.697 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.623 6.623 9 C 0.109 3.891 10 H 0.088 0.912 11 C -0.167 4.167 12 C 0.051 3.949 13 N -0.529 5.529 14 C 0.042 3.958 15 C 0.499 3.501 16 O -0.580 6.580 17 N -0.709 5.709 18 C 0.234 3.766 19 C -0.546 4.546 20 H 0.060 0.940 21 C 0.026 3.974 22 N -0.931 5.931 23 Si 0.938 3.062 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.261 1.261 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.408 0.592 50 H 0.010 0.990 51 H 0.009 0.991 52 H 0.272 0.728 53 H 0.096 0.904 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 30.166 -16.898 35.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.419 4.419 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.434 2.566 6 C -0.618 4.618 7 C -0.619 4.619 8 O -0.582 6.582 9 C 0.051 3.949 10 H 0.105 0.895 11 C -0.205 4.205 12 C -0.076 4.076 13 N -0.254 5.254 14 C -0.089 4.089 15 C 0.286 3.714 16 O -0.459 6.459 17 N -0.360 5.360 18 C 0.110 3.890 19 C -0.584 4.584 20 H 0.078 0.922 21 C -0.175 4.175 22 N -0.570 5.570 23 Si 0.761 3.239 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.186 1.186 27 C -0.084 4.084 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.145 0.855 49 H 0.244 0.756 50 H 0.028 0.972 51 H 0.027 0.973 52 H 0.081 0.919 53 H 0.114 0.886 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.970 29.959 -16.106 34.720 hybrid contribution -0.731 -0.052 0.472 0.872 sum 6.239 29.907 -15.633 34.319 Atomic orbital electron populations 1.21538 0.94196 1.01738 1.01915 1.25784 1.00395 1.03074 1.12640 1.21600 1.01310 0.94459 1.02332 1.21546 1.01060 1.00029 0.96793 0.76469 0.62679 0.52850 0.64626 1.27211 1.06936 1.09847 1.17824 1.27095 1.25280 1.05039 1.04475 1.85333 1.79317 1.46651 1.46864 1.22670 0.96744 0.91517 0.83926 0.89470 1.23478 1.01148 0.98186 0.97710 1.22664 0.97723 0.91225 0.96013 1.63207 1.48296 1.04322 1.09608 1.22163 0.99073 0.92831 0.94838 1.21253 0.78504 0.81180 0.90502 1.90625 1.42686 1.69635 1.42987 1.46026 1.50765 1.21812 1.17427 1.19041 0.95726 0.90331 0.83872 1.21313 1.30981 1.04574 1.01554 0.92190 1.25606 0.95466 0.94390 1.02001 1.69984 1.41274 1.12179 1.33541 0.85855 0.79973 0.78326 0.79709 1.19011 1.19817 1.18582 1.23251 1.03394 0.92065 0.89714 0.92178 0.92966 0.92751 0.91780 0.92746 0.91847 0.92643 0.92958 0.92064 0.91348 0.90184 0.91041 0.90930 0.90065 0.91566 0.89638 0.88753 0.91437 0.93587 0.89529 0.85516 0.75630 0.97173 0.97262 0.91874 0.88613 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.85 71.98 0.56 -1.06 16 2 C -0.38 -4.11 0.53 -10.80 -0.01 -4.12 16 3 C -0.14 -1.28 7.85 71.98 0.56 -0.72 16 4 C -0.14 -1.58 7.85 71.98 0.56 -1.02 16 5 Si 1.30 14.38 8.15 68.60 0.56 14.94 16 6 C -0.52 -5.94 8.05 113.37 0.91 -5.03 16 7 C -0.52 -5.98 8.56 113.37 0.97 -5.01 16 8 O -0.62 -9.43 8.43 -148.98 -1.26 -10.68 16 9 C 0.11 1.83 2.96 32.15 0.10 1.92 16 10 H 0.09 1.31 6.33 -2.39 -0.02 1.29 16 11 C -0.17 -2.98 5.94 31.77 0.19 -2.79 16 12 C 0.05 1.28 5.65 86.64 0.49 1.77 16 13 N -0.53 -13.40 4.85 -889.11 -4.31 -17.71 16 14 C 0.04 1.07 5.03 85.56 0.43 1.50 16 15 C 0.50 18.44 7.48 87.66 0.66 19.09 16 16 O -0.58 -26.18 15.55 -3.03 -0.05 -26.23 16 17 N -0.71 -28.18 5.55 -466.81 -2.59 -30.77 16 18 C 0.23 11.56 4.50 85.63 0.38 11.95 16 19 C -0.55 -30.27 9.83 25.60 0.25 -30.02 16 20 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 21 C 0.03 1.46 5.47 84.66 0.46 1.92 16 22 N -0.93 -55.74 13.96 21.45 0.30 -55.44 16 23 Si 0.94 44.42 27.47 68.60 1.88 46.30 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 27 C 0.04 0.81 6.44 86.94 0.56 1.37 16 28 H 0.06 0.63 7.79 -2.39 -0.02 0.61 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.05 0.71 7.97 -2.39 -0.02 0.69 16 31 H 0.06 0.48 7.79 -2.39 -0.02 0.46 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.48 7.79 -2.39 -0.02 0.46 16 34 H 0.05 0.70 7.96 -2.39 -0.02 0.68 16 35 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.06 0.61 7.79 -2.39 -0.02 0.59 16 37 H 0.07 0.82 6.33 -2.39 -0.02 0.81 16 38 H 0.08 0.77 7.79 -2.39 -0.02 0.75 16 39 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 40 H 0.07 0.84 7.79 -2.39 -0.02 0.83 16 41 H 0.08 0.78 7.79 -2.39 -0.02 0.76 16 42 H 0.07 0.81 7.12 -2.39 -0.02 0.79 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.09 1.43 6.26 -2.38 -0.01 1.41 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.24 7.31 -2.39 -0.02 1.22 16 47 H 0.09 1.84 7.96 -2.39 -0.02 1.82 16 48 H 0.13 2.60 8.07 -2.39 -0.02 2.58 16 49 H 0.41 14.01 8.32 -92.71 -0.77 13.23 16 50 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 51 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 52 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 53 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 54 H 0.07 1.22 7.81 -2.38 -0.02 1.20 16 Total: -1.00 -69.84 422.22 1.65 -68.19 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.02 Total: 21.63 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 7.09 Total: -10.23 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -6.61 Total: -103.91 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.30 Total: -36.91 kcal Atomic # 14 Polarization: 58.79 SS G_CDS: 2.44 Total: 61.24 kcal Total: -69.84 1.65 -68.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852521992.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.933 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds