Wall clock time and date at job start Wed Apr 1 2020 01:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46962 * 2 1 4 4 C 1.52995 * 109.47142 * 240.00150 * 2 1 3 5 5 C 1.53002 * 109.47073 * 119.99637 * 2 1 3 6 6 C 1.50704 * 109.46721 * 65.64996 * 5 2 1 7 7 C 1.37981 * 120.07367 * 269.60192 * 6 5 2 8 8 C 1.38328 * 120.14435 * 180.02562 * 7 6 5 9 9 C 1.38382 * 120.29499 * 359.97438 * 8 7 6 10 10 C 1.37935 * 120.14416 * 359.97438 * 9 8 7 11 11 C 1.39558 * 120.07208 * 89.60429 * 6 5 2 12 12 C 1.47842 * 120.14702 * 359.95378 * 11 6 5 13 13 O 1.21550 * 119.99884 * 5.30927 * 12 11 6 14 14 N 1.34781 * 120.00136 * 185.31810 * 12 11 6 15 15 C 1.46499 * 119.99901 * 180.02562 * 14 12 11 16 16 H 1.08993 * 115.51750 * 350.57379 * 15 14 12 17 17 C 1.52999 * 117.43995 * 205.16411 * 15 14 12 18 18 H 1.09009 * 119.53936 * 5.71429 * 17 15 14 19 19 C 1.54387 * 118.12241 * 160.80667 * 17 15 14 20 20 N 1.48149 * 104.61389 * 87.19062 * 19 17 15 21 21 C 1.36938 * 127.83357 * 140.41040 * 20 19 17 22 22 H 1.08000 * 120.00053 * 193.45176 * 21 20 19 23 23 C 1.38815 * 120.00100 * 13.46864 * 21 20 19 24 24 N 1.31615 * 120.00289 * 9.18695 * 23 21 20 25 25 Si 1.86800 * 119.99799 * 189.19436 * 23 21 20 26 26 H 1.48498 * 109.47536 * 59.99338 * 25 23 21 27 27 H 1.48503 * 109.47348 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47299 * 299.99547 * 25 23 21 29 29 C 1.48135 * 104.32460 * 320.41292 * 20 19 17 30 30 C 1.52999 * 117.44357 * 135.99647 * 15 14 12 31 31 H 1.09002 * 119.53758 * 355.87700 * 30 15 14 32 32 H 1.09006 * 109.47615 * 300.00020 * 1 2 3 33 33 H 1.09006 * 109.47430 * 59.99760 * 1 2 3 34 34 H 1.09003 * 109.47194 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46900 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46876 * 300.00050 * 3 2 1 37 37 H 1.08993 * 109.47012 * 59.99882 * 3 2 1 38 38 H 1.09001 * 109.46822 * 293.83826 * 4 2 1 39 39 H 1.09000 * 109.47310 * 53.84005 * 4 2 1 40 40 H 1.09002 * 109.47114 * 173.84198 * 4 2 1 41 41 H 1.08998 * 109.47438 * 305.64882 * 5 2 1 42 42 H 1.08999 * 109.46860 * 185.64634 * 5 2 1 43 43 H 1.08003 * 119.92168 * 0.02562 * 7 6 5 44 44 H 1.07999 * 119.85181 * 180.02562 * 8 7 6 45 45 H 1.08001 * 119.92660 * 179.97438 * 9 8 7 46 46 H 1.08002 * 120.07194 * 179.71853 * 10 9 8 47 47 H 0.96994 * 119.99678 * 359.97438 * 14 12 11 48 48 H 1.09004 * 110.40436 * 205.97147 * 19 17 15 49 49 H 1.08992 * 110.40821 * 328.40777 * 19 17 15 50 50 H 0.96994 * 120.00088 * 180.02562 * 24 23 21 51 51 H 1.09006 * 110.40480 * 158.36771 * 29 20 19 52 52 H 1.08991 * 110.41214 * 280.80084 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.6550 -2.1767 1.1814 7 6 0.4565 -2.6007 1.7177 8 6 0.1019 -3.9363 1.6566 9 6 0.9451 -4.8557 1.0576 10 6 2.1456 -4.4449 0.5167 11 6 2.5100 -3.0986 0.5759 12 6 3.7953 -2.6512 -0.0017 13 8 4.1542 -1.4979 0.1345 14 7 4.5691 -3.5222 -0.6794 15 6 5.8430 -3.0790 -1.2512 16 1 6.0199 -2.0038 -1.2266 17 6 6.3843 -3.8552 -2.4534 18 1 5.7768 -4.6402 -2.9041 19 6 7.4456 -3.1723 -3.3427 20 7 8.7389 -3.4962 -2.6967 21 6 9.9223 -3.8229 -3.3033 22 1 10.7286 -4.2453 -2.7220 23 6 10.0857 -3.6110 -4.6654 24 7 9.1803 -2.9340 -5.3394 25 14 11.5906 -4.2867 -5.5419 26 1 11.6227 -5.7648 -5.4023 27 1 11.5283 -3.9271 -6.9813 28 1 12.8171 -3.7060 -4.9388 29 6 8.4615 -3.3863 -1.2457 30 6 7.0537 -3.9971 -1.0722 31 1 6.9562 -4.9053 -0.4774 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 1.7694 -1.7758 -1.1958 39 1 1.5894 -0.2750 -2.1358 40 1 3.1244 -0.6267 -1.3060 41 1 1.5964 -0.2691 2.1364 42 1 3.1252 -0.6344 1.3013 43 1 -0.2062 -1.8880 2.1861 44 1 -0.8375 -4.2630 2.0775 45 1 0.6626 -5.8972 1.0136 46 1 2.8049 -5.1641 0.0535 47 1 4.2829 -4.4425 -0.7878 48 1 7.4133 -3.5791 -4.3534 49 1 7.2894 -2.0938 -3.3608 50 1 9.2944 -2.7862 -6.2912 51 1 9.1956 -3.9545 -0.6743 52 1 8.4639 -2.3413 -0.9362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960464308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:38 Heat of formation + Delta-G solvation = 32.926126 kcal Electronic energy + Delta-G solvation = -30395.599575 eV Core-core repulsion = 26554.062542 eV Total energy + Delta-G solvation = -3841.537033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.84973 -40.50610 -39.05814 -38.00475 -36.07181 -34.44240 -32.60898 -32.50625 -31.49579 -28.93094 -28.19241 -28.07384 -27.82618 -27.30060 -24.92010 -23.53895 -22.56459 -21.86251 -21.45071 -20.90522 -19.79224 -18.89027 -18.49791 -17.65051 -16.77251 -16.72482 -16.50710 -16.21498 -16.08784 -15.54348 -15.35891 -15.06783 -15.03110 -14.80953 -14.65917 -14.48739 -13.79031 -13.76655 -13.41966 -13.35418 -13.21648 -13.19951 -12.95619 -12.92346 -12.69560 -12.59872 -12.54022 -12.45407 -12.15561 -12.12306 -12.03691 -11.84747 -11.67409 -11.60144 -11.45815 -11.35182 -10.86860 -10.70797 -10.36858 -9.91005 -9.67150 -9.52212 -8.95174 -7.91272 -5.28204 -0.07533 0.45962 1.46551 1.49868 1.56625 1.84382 1.95154 2.48347 2.78090 2.98541 3.28026 3.56444 3.69200 3.79539 3.82527 3.86158 3.93612 4.00865 4.06111 4.13188 4.16928 4.28284 4.36031 4.47203 4.49038 4.55482 4.70051 4.72426 4.78912 4.79545 4.86601 4.87928 4.93709 4.95116 4.97403 5.03049 5.09114 5.15098 5.17365 5.24141 5.28025 5.38724 5.42262 5.43622 5.47327 5.50714 5.52421 5.56127 5.59181 5.64781 5.81944 6.02263 6.16010 6.52941 6.99539 7.25061 7.66672 8.44349 9.21712 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.002451 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.093482 B =11420.648914 C =12306.536121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.136 4.136 4 C -0.146 4.146 5 C -0.099 4.099 6 C -0.024 4.024 7 C -0.132 4.132 8 C -0.088 4.088 9 C -0.135 4.135 10 C -0.090 4.090 11 C -0.153 4.153 12 C 0.556 3.444 13 O -0.548 6.548 14 N -0.684 5.684 15 C 0.122 3.878 16 H 0.107 0.893 17 C -0.179 4.179 18 H 0.125 0.875 19 C 0.188 3.812 20 N -0.617 5.617 21 C -0.242 4.242 22 H 0.084 0.916 23 C -0.064 4.064 24 N -0.949 5.949 25 Si 0.983 3.017 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.276 1.276 29 C 0.149 3.851 30 C -0.166 4.166 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.140 0.860 47 H 0.412 0.588 48 H 0.063 0.937 49 H -0.006 1.006 50 H 0.250 0.750 51 H 0.063 0.937 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.766 -2.451 15.901 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.136 4.136 6 C -0.025 4.025 7 C -0.150 4.150 8 C -0.106 4.106 9 C -0.152 4.152 10 C -0.109 4.109 11 C -0.156 4.156 12 C 0.347 3.653 13 O -0.428 6.428 14 N -0.334 5.334 15 C 0.015 3.985 16 H 0.125 0.875 17 C -0.201 4.201 18 H 0.142 0.858 19 C 0.062 3.938 20 N -0.341 5.341 21 C -0.371 4.371 22 H 0.101 0.899 23 C -0.257 4.257 24 N -0.597 5.597 25 Si 0.810 3.190 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.202 1.202 29 C 0.024 3.976 30 C -0.187 4.187 31 H 0.151 0.849 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.162 0.838 44 H 0.172 0.828 45 H 0.171 0.829 46 H 0.158 0.842 47 H 0.250 0.750 48 H 0.082 0.918 49 H 0.012 0.988 50 H 0.059 0.941 51 H 0.082 0.918 52 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -23.353 -1.635 15.772 28.227 hybrid contribution 1.059 -0.425 -1.070 1.565 sum -22.293 -2.060 14.702 26.784 Atomic orbital electron populations 1.21938 0.93597 1.02018 1.02057 1.20274 0.95841 0.94807 0.93988 1.21809 1.00318 0.95315 1.01913 1.22169 1.01310 0.99695 0.97085 1.21206 1.04379 0.90275 0.97703 1.20050 0.93380 0.95366 0.93704 1.21296 0.95742 0.97093 1.00853 1.21729 1.00101 0.92583 0.96167 1.21417 0.93770 1.01421 0.98615 1.21546 0.97714 0.93747 0.97894 1.19693 0.94897 0.95416 1.05607 1.18674 0.84273 0.84846 0.77531 1.90614 1.74041 1.18895 1.59222 1.45157 1.19287 1.14237 1.54670 1.21331 0.82949 0.96621 0.97588 0.87476 1.24312 1.01099 1.03776 0.90867 0.85759 1.20836 0.82791 0.94202 0.96017 1.45479 1.06986 1.80597 1.01019 1.19384 0.91504 1.33977 0.92193 0.89856 1.25745 1.01692 1.00356 0.97911 1.70080 1.37468 1.44298 1.07807 0.85097 0.78685 0.78291 0.76903 1.20064 1.22007 1.20157 1.21248 0.93630 0.97010 0.85733 1.24265 0.92008 1.02248 1.00190 0.84870 0.91429 0.92915 0.92356 0.94260 0.92667 0.91553 0.93428 0.93867 0.93109 0.90605 0.88818 0.83782 0.82792 0.82899 0.84238 0.75026 0.91817 0.98837 0.94082 0.91836 0.96357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.08 71.98 0.58 -1.71 16 2 C -0.05 -1.06 0.79 -52.18 -0.04 -1.10 16 3 C -0.14 -2.93 8.47 71.98 0.61 -2.32 16 4 C -0.15 -3.84 6.84 71.98 0.49 -3.35 16 5 C -0.10 -2.18 4.06 29.85 0.12 -2.06 16 6 C -0.02 -0.49 4.02 -19.61 -0.08 -0.56 16 7 C -0.13 -1.91 7.99 22.23 0.18 -1.73 16 8 C -0.09 -0.99 10.04 22.33 0.22 -0.76 16 9 C -0.13 -1.61 10.03 22.23 0.22 -1.38 16 10 C -0.09 -1.45 9.53 22.53 0.21 -1.23 16 11 C -0.15 -3.34 4.57 -20.09 -0.09 -3.43 16 12 C 0.56 15.37 6.27 86.78 0.54 15.91 16 13 O -0.55 -18.45 10.01 -3.87 -0.04 -18.49 16 14 N -0.68 -17.70 5.51 -445.42 -2.46 -20.16 16 15 C 0.12 4.07 5.98 44.99 0.27 4.34 16 16 H 0.11 4.20 7.40 -2.39 -0.02 4.19 16 17 C -0.18 -6.71 7.05 -9.94 -0.07 -6.78 16 18 H 0.12 4.10 8.14 -2.38 -0.02 4.08 16 19 C 0.19 9.42 5.75 86.53 0.50 9.92 16 20 N -0.62 -32.42 3.38 -688.09 -2.33 -34.75 16 21 C -0.24 -13.70 10.36 84.03 0.87 -12.83 16 22 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 23 C -0.06 -3.63 5.41 84.86 0.46 -3.18 16 24 N -0.95 -57.59 10.75 21.65 0.23 -57.35 16 25 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 26 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 29 C 0.15 6.36 7.04 86.55 0.61 6.97 16 30 C -0.17 -5.71 7.05 -9.92 -0.07 -5.78 16 31 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.93 6.30 -2.39 -0.02 0.92 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.24 5.45 -2.39 -0.01 1.23 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 1.64 5.67 -2.39 -0.01 1.63 16 41 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 42 H 0.09 2.68 5.06 -5.91 -0.03 2.65 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 45 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.14 1.68 6.44 -2.91 -0.02 1.66 16 47 H 0.41 8.06 6.89 -92.71 -0.64 7.42 16 48 H 0.06 3.59 6.36 -2.39 -0.02 3.57 16 49 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 51 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 52 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -70.44 397.45 3.24 -67.19 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.26 Total: 26.95 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 5.54 Total: -11.06 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -4.55 Total: -112.26 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -70.44 3.24 -67.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960464308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.121 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds