Wall clock time and date at job start Wed Apr 1 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46591 * 2 1 4 4 C 1.53001 * 109.46618 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47095 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99560 * 89.99998 * 5 4 3 7 7 C 1.38230 * 119.99911 * 179.97438 * 6 5 4 8 8 C 1.38237 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00184 * 180.02562 * 8 7 6 10 10 C 1.50705 * 109.47180 * 90.00422 * 9 8 7 11 11 O 1.21277 * 119.99598 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00049 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99890 * 179.97438 * 12 10 9 14 14 H 1.08996 * 115.51366 * 350.58115 * 13 12 10 15 15 C 1.53002 * 117.44326 * 205.16545 * 13 12 10 16 16 H 1.08997 * 119.53592 * 4.16586 * 15 13 12 17 17 C 1.54384 * 118.12343 * 159.25464 * 15 13 12 18 18 N 1.51510 * 102.93787 * 88.08391 * 17 15 13 19 19 C 1.36929 * 127.63461 * 140.52761 * 18 17 15 20 20 H 1.08009 * 120.00007 * 194.68587 * 19 18 17 21 21 C 1.38812 * 120.00332 * 14.69489 * 19 18 17 22 22 N 1.31618 * 119.99537 * 8.93388 * 21 19 18 23 23 Si 1.86799 * 120.00372 * 188.93654 * 21 19 18 24 24 H 1.48503 * 109.47117 * 94.09968 * 23 21 19 25 25 H 1.48496 * 109.47375 * 214.10319 * 23 21 19 26 26 H 1.48504 * 109.46993 * 334.10449 * 23 21 19 27 27 C 1.48149 * 104.52752 * 320.25164 * 18 17 15 28 28 C 1.52998 * 117.44169 * 135.99918 * 13 12 10 29 29 H 1.08999 * 119.54036 * 355.83591 * 28 13 12 30 30 C 1.38240 * 119.99924 * 0.27918 * 8 7 6 31 31 C 1.38231 * 119.99857 * 359.51275 * 30 8 7 32 32 H 1.08994 * 109.47704 * 300.00374 * 1 2 3 33 33 H 1.09008 * 109.47053 * 60.00622 * 1 2 3 34 34 H 1.09002 * 109.47373 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47030 * 239.99825 * 2 1 3 36 36 H 1.08998 * 109.46664 * 119.99702 * 2 1 3 37 37 H 1.09002 * 109.47296 * 59.99731 * 3 2 1 38 38 H 1.08998 * 109.47374 * 299.99268 * 3 2 1 39 39 H 1.09002 * 109.47183 * 60.00058 * 4 3 2 40 40 H 1.09000 * 109.47481 * 299.99896 * 4 3 2 41 41 H 1.07997 * 120.00043 * 359.97438 * 6 5 4 42 42 H 1.07997 * 120.00196 * 180.02562 * 7 6 5 43 43 H 1.09002 * 109.47474 * 330.00075 * 9 8 7 44 44 H 1.09004 * 109.47270 * 209.99804 * 9 8 7 45 45 H 0.97000 * 120.00016 * 359.97438 * 12 10 9 46 46 H 1.08997 * 110.41240 * 205.97896 * 17 15 13 47 47 H 1.08999 * 110.40864 * 328.41342 * 17 15 13 48 48 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.40830 * 281.08211 * 27 18 17 50 50 H 1.08995 * 110.41050 * 158.64682 * 27 18 17 51 51 H 1.08001 * 119.99872 * 179.72649 * 30 8 7 52 52 H 1.07997 * 120.00100 * 180.27173 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8634 0.0000 6 6 4.3021 3.5157 1.1970 7 6 4.7633 4.8188 1.1965 8 6 4.9953 5.4695 -0.0009 9 6 5.4987 6.8899 -0.0015 10 6 7.0057 6.8887 -0.0003 11 8 7.6113 5.8379 0.0014 12 7 7.6805 8.0554 0.0000 13 6 9.1455 8.0543 0.0017 14 1 9.6140 7.0836 0.1637 15 6 9.8509 9.2829 0.5794 16 1 9.2593 10.0804 1.0288 17 6 11.3157 9.1303 1.0428 18 7 12.1025 9.4171 -0.2198 19 6 13.2698 10.1235 -0.3352 20 1 13.6049 10.4580 -1.3060 21 6 14.0227 10.4095 0.7954 22 7 13.7132 9.8570 1.9492 23 14 15.4750 11.5786 0.6793 24 1 15.0350 12.9515 1.0353 25 1 16.5392 11.1409 1.6179 26 1 16.0054 11.5729 -0.7078 27 6 11.3297 8.7566 -1.2974 28 6 9.8525 9.0300 -0.9411 29 1 9.2620 9.6389 -1.6257 30 6 4.7604 4.8189 -1.1979 31 6 4.3033 3.5144 -1.1974 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6765 1.9564 0.8900 38 1 1.6766 1.9564 -0.8900 39 1 3.9336 0.9286 -0.8891 40 1 3.9329 0.9289 0.8908 41 1 4.1213 3.0072 2.1325 42 1 4.9433 5.3283 2.1316 43 1 5.1350 7.4047 0.8878 44 1 5.1365 7.4034 -0.8922 45 1 7.1961 8.8958 -0.0010 46 1 11.5495 9.8659 1.8124 47 1 11.4937 8.1210 1.4139 48 1 14.2391 10.0572 2.7393 49 1 11.5268 7.6846 -1.3043 50 1 11.5748 9.1953 -2.2646 51 1 4.9374 5.3288 -2.1333 52 1 4.1240 3.0047 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960853571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:44 Heat of formation + Delta-G solvation = 24.294322 kcal Electronic energy + Delta-G solvation = -28000.543328 eV Core-core repulsion = 24158.631992 eV Total energy + Delta-G solvation = -3841.911337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.20073 -39.30889 -38.14078 -36.19333 -34.34939 -33.45567 -32.59861 -31.04481 -30.66099 -29.92569 -27.27863 -27.11335 -25.54720 -23.98293 -22.87886 -22.04576 -21.48937 -20.85989 -20.48610 -19.99436 -19.20590 -17.02269 -16.84010 -16.58420 -16.24783 -15.92112 -15.49177 -15.21747 -14.68677 -14.58789 -14.43742 -14.07169 -13.62918 -13.57767 -13.47445 -13.28266 -13.17257 -12.89182 -12.73756 -12.31753 -12.29792 -12.17748 -11.75445 -11.64477 -11.48573 -11.45442 -11.44036 -11.12264 -11.00349 -10.89462 -10.87331 -10.83160 -10.42817 -10.19584 -10.13033 -9.83023 -9.67011 -9.20737 -9.00582 -8.74217 -8.63056 -8.32230 -6.87477 -5.78338 -3.11656 1.17156 1.32060 2.66410 3.13092 3.38990 3.44236 3.46461 3.68739 4.31696 4.35566 4.47525 4.50592 4.51956 4.66493 4.69831 4.87342 4.89716 4.90303 4.91100 5.13092 5.16446 5.23869 5.31673 5.33083 5.34733 5.35822 5.38610 5.40967 5.45117 5.56778 5.58353 5.61839 5.74960 5.80152 5.84529 5.88712 5.90204 5.96956 5.98683 6.15739 6.24258 6.28344 6.46577 6.48617 6.53574 6.69808 6.81462 6.88982 6.90015 7.31273 7.51969 7.59857 7.70522 8.15803 8.31758 9.07387 9.73622 10.50431 11.36604 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.035463 B = 0.001483 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.361570 B =18876.853552 C =19013.406804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.081 4.081 5 C -0.084 4.084 6 C -0.116 4.116 7 C -0.101 4.101 8 C -0.067 4.067 9 C -0.102 4.102 10 C 0.515 3.485 11 O -0.529 6.529 12 N -0.700 5.700 13 C 0.096 3.904 14 H 0.131 0.869 15 C -0.178 4.178 16 H 0.101 0.899 17 C 0.185 3.815 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.158 3.842 28 C -0.183 4.183 29 H 0.102 0.898 30 C -0.102 4.102 31 C -0.117 4.117 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.398 0.602 46 H 0.092 0.908 47 H 0.031 0.969 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.051 0.949 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.813 -12.823 -3.524 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.118 4.118 5 C -0.084 4.084 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.068 4.068 9 C -0.142 4.142 10 C 0.300 3.700 11 O -0.404 6.404 12 N -0.349 5.349 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.199 4.199 16 H 0.119 0.881 17 C 0.060 3.940 18 N -0.322 5.322 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.564 5.564 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.031 3.969 28 C -0.204 4.204 29 H 0.120 0.880 30 C -0.120 4.120 31 C -0.135 4.135 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.232 0.768 46 H 0.110 0.890 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.070 0.930 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.134 -13.498 -3.399 30.495 hybrid contribution 0.518 1.235 -0.016 1.340 sum -26.616 -12.262 -3.415 29.503 Atomic orbital electron populations 1.21777 0.95906 1.01537 1.01835 1.21556 0.95853 0.96869 1.02065 1.21605 0.94401 0.96675 1.02411 1.20618 0.95524 0.92767 1.02908 1.19847 0.99289 0.96033 0.93236 1.20948 1.00294 0.94725 0.97478 1.20961 0.98673 0.94939 0.97373 1.19241 0.99210 0.94716 0.93626 1.20683 0.92596 0.95745 1.05193 1.20476 0.89439 0.83790 0.76244 1.90738 1.70172 1.31093 1.48433 1.45417 1.06420 1.08318 1.74748 1.21862 0.78385 0.97099 1.03682 0.85185 1.24571 1.00335 0.98127 0.96908 0.88079 1.21651 0.82169 0.99785 0.90359 1.45993 1.24391 1.60394 1.01472 1.19039 0.96272 1.25904 0.94096 0.90496 1.24866 0.98649 1.00683 0.96153 1.69885 1.41570 1.45362 0.99536 0.86096 0.81833 0.80519 0.77277 1.21601 1.21679 1.20530 1.21066 0.87254 0.95630 0.92942 1.24356 0.98804 1.03389 0.93889 0.87971 1.20950 0.98786 0.94919 0.97333 1.20939 1.00363 0.94712 0.97457 0.92757 0.92775 0.92837 0.92010 0.91999 0.91855 0.91863 0.91077 0.91056 0.86254 0.86226 0.87973 0.88024 0.76803 0.88962 0.95068 0.93587 0.95637 0.93022 0.86278 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.11 -0.71 5.20 -26.73 -0.14 -0.85 16 4 C -0.08 -0.59 5.34 -27.88 -0.15 -0.74 16 5 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 6 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 7 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 8 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 9 C -0.10 -0.95 5.83 -29.03 -0.17 -1.12 16 10 C 0.51 7.01 7.82 -10.98 -0.09 6.92 16 11 O -0.53 -9.68 15.60 5.56 0.09 -9.60 16 12 N -0.70 -9.12 5.56 -53.81 -0.30 -9.42 16 13 C 0.10 1.62 5.97 -67.93 -0.41 1.21 16 14 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 15 C -0.18 -3.34 6.96 -89.30 -0.62 -3.96 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 17 C 0.19 4.45 5.91 -0.48 0.00 4.45 16 18 N -0.60 -15.43 3.44 -165.99 -0.57 -16.01 16 19 C -0.22 -6.30 10.36 -15.06 -0.16 -6.45 16 20 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 21 C -0.01 -0.19 5.42 -17.43 -0.09 -0.28 16 22 N -0.92 -26.93 10.82 55.49 0.60 -26.33 16 23 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C 0.16 3.38 7.05 -2.40 -0.02 3.36 16 28 C -0.18 -3.27 7.05 -89.29 -0.63 -3.90 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 30 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 31 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 44 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 45 H 0.40 3.90 8.83 -40.82 -0.36 3.54 16 46 H 0.09 2.45 6.55 -51.93 -0.34 2.11 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 52 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 424.61 15.07 6.40 6.40 Total: -1.00 -33.34 424.61 -12.68 -46.02 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -9.08 Total: 3.14 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -4.79 Total: -11.16 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.27 Total: -51.76 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.34 -12.68 -46.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960853571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.314 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds