Wall clock time and date at job start Wed Apr 1 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46816 * 2 1 4 4 C 1.52992 * 109.47522 * 119.99983 * 2 1 3 5 5 C 1.50700 * 109.47085 * 64.99893 * 4 2 1 6 6 C 1.38243 * 120.00140 * 269.73344 * 5 4 2 7 7 C 1.38236 * 119.99791 * 179.74623 * 6 5 4 8 8 C 1.38233 * 119.99944 * 0.51751 * 7 6 5 9 9 C 1.50704 * 119.99740 * 179.76980 * 8 7 6 10 10 C 1.50702 * 109.47455 * 269.98164 * 9 8 7 11 11 O 1.21279 * 119.99772 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99949 * 179.97438 * 12 10 9 14 14 H 1.08993 * 115.52017 * 350.58603 * 13 12 10 15 15 C 1.53000 * 117.44218 * 205.16956 * 13 12 10 16 16 H 1.08999 * 119.54308 * 4.11690 * 15 13 12 17 17 C 1.54390 * 118.12443 * 159.21770 * 15 13 12 18 18 N 1.51682 * 102.89965 * 88.04123 * 17 15 13 19 19 C 1.36944 * 127.61407 * 140.53667 * 18 17 15 20 20 H 1.07998 * 120.00231 * 194.72317 * 19 18 17 21 21 C 1.38820 * 119.99535 * 14.73090 * 19 18 17 22 22 N 1.31619 * 119.99940 * 9.01378 * 21 19 18 23 23 Si 1.86799 * 119.99581 * 189.01112 * 21 19 18 24 24 H 1.48498 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47124 * 119.99994 * 23 21 19 26 26 H 1.48503 * 109.46929 * 239.99913 * 23 21 19 27 27 C 1.48147 * 104.55264 * 320.31819 * 18 17 15 28 28 C 1.53004 * 117.44170 * 136.00152 * 13 12 10 29 29 H 1.09001 * 119.54064 * 355.88264 * 28 13 12 30 30 C 1.38234 * 120.00080 * 359.75870 * 8 7 6 31 31 C 1.38228 * 120.00134 * 359.96982 * 30 8 7 32 32 H 1.09000 * 109.47107 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47414 * 299.99632 * 1 2 3 34 34 H 1.09005 * 109.47269 * 59.99840 * 1 2 3 35 35 H 1.08997 * 109.46947 * 240.00375 * 2 1 3 36 36 H 1.08997 * 109.47057 * 60.00442 * 3 2 1 37 37 H 1.08998 * 109.46450 * 180.02562 * 3 2 1 38 38 H 1.09001 * 109.46866 * 299.99982 * 3 2 1 39 39 H 1.08995 * 109.47619 * 185.00053 * 4 2 1 40 40 H 1.09001 * 109.47013 * 305.00280 * 4 2 1 41 41 H 1.07995 * 119.99735 * 359.97438 * 6 5 4 42 42 H 1.08001 * 120.00154 * 180.29455 * 7 6 5 43 43 H 1.09001 * 109.46931 * 29.98888 * 9 8 7 44 44 H 1.09010 * 109.46748 * 149.98402 * 9 8 7 45 45 H 0.97006 * 119.99838 * 0.02562 * 12 10 9 46 46 H 1.08998 * 110.41060 * 205.97873 * 17 15 13 47 47 H 1.09004 * 110.40323 * 328.40244 * 17 15 13 48 48 H 0.97005 * 119.99343 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.40725 * 281.02716 * 27 18 17 50 50 H 1.08993 * 110.40811 * 158.59040 * 27 18 17 51 51 H 1.08001 * 119.99936 * 179.97438 * 30 8 7 52 52 H 1.08005 * 120.00125 * 180.02562 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6414 -2.1733 1.1888 6 6 0.4381 -2.5829 1.7323 7 6 0.0701 -3.9140 1.6723 8 6 0.9101 -4.8372 1.0783 9 6 0.5112 -6.2892 1.0175 10 6 1.0136 -7.0002 2.2476 11 8 1.6341 -6.3880 3.0909 12 7 0.7725 -8.3161 2.4111 13 6 1.2614 -9.0073 3.6067 14 1 1.9429 -8.4339 4.2350 15 6 1.4993 -10.5151 3.5017 16 1 1.3677 -11.0143 2.5417 17 6 2.4437 -11.1761 4.5286 18 7 1.5110 -11.5198 5.6743 19 6 1.5184 -12.6497 6.4480 20 1 0.6668 -12.8845 7.0692 21 6 2.6208 -13.4933 6.4337 22 7 3.7249 -13.1231 5.8204 23 14 2.5370 -15.1539 7.2852 24 1 1.1947 -15.3303 7.8952 25 1 2.7743 -16.2320 6.2919 26 1 3.5754 -15.2198 8.3448 27 6 0.5963 -10.3584 5.7708 28 6 0.3013 -9.9721 4.3055 29 1 -0.7228 -10.0668 3.9444 30 6 2.1160 -4.4285 0.5399 31 6 2.4814 -3.0966 0.5949 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1299 1.4425 -0.0005 38 1 1.6765 1.9564 -0.8900 39 1 3.1263 -0.6443 1.2951 40 1 1.6054 -0.2617 2.1369 41 1 -0.2161 -1.8623 2.2005 42 1 -0.8721 -4.2333 2.0927 43 1 -0.5751 -6.3659 0.9716 44 1 0.9458 -6.7485 0.1295 45 1 0.2760 -8.8056 1.7368 46 1 2.8854 -12.0811 4.1114 47 1 3.2230 -10.4774 4.8330 48 1 4.4953 -13.7125 5.8109 49 1 1.0831 -9.5334 6.2908 50 1 -0.3240 -10.6409 6.2820 51 1 2.7725 -5.1499 0.0762 52 1 3.4234 -2.7772 0.1739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960895315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:47 Heat of formation + Delta-G solvation = 27.867908 kcal Electronic energy + Delta-G solvation = -28366.056799 eV Core-core repulsion = 24524.300425 eV Total energy + Delta-G solvation = -3841.756374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.23850 -39.39104 -38.17845 -36.56924 -34.34136 -33.07564 -32.50207 -31.06677 -30.29627 -29.02758 -27.50816 -27.13493 -25.96765 -25.18020 -22.87142 -22.20093 -21.22487 -20.50757 -20.27471 -19.98878 -19.20343 -17.02651 -16.83989 -16.62886 -16.15477 -15.92166 -15.27925 -15.07950 -14.68864 -14.62757 -14.49495 -14.05446 -13.75069 -13.58850 -13.51814 -13.19124 -12.78970 -12.69985 -12.60896 -12.42366 -12.35036 -12.17882 -12.04358 -11.75317 -11.46383 -11.44836 -11.22932 -11.10276 -11.00175 -10.94767 -10.88238 -10.84381 -10.42599 -10.19074 -10.12332 -9.82849 -9.67080 -9.20636 -8.98758 -8.74651 -8.61679 -8.32340 -6.87347 -5.78592 -3.11663 1.17867 1.32541 2.66521 3.13206 3.38499 3.44372 3.46884 3.69034 4.31612 4.39847 4.47350 4.48564 4.55306 4.61543 4.68832 4.88711 4.91172 4.95867 5.01719 5.16220 5.23764 5.24419 5.29613 5.31104 5.35606 5.38408 5.39521 5.47502 5.53201 5.56504 5.56816 5.63788 5.72733 5.79890 5.89829 5.91609 5.93499 5.95928 6.01301 6.15616 6.24221 6.29113 6.47199 6.49569 6.53498 6.69703 6.81411 6.89481 6.89966 7.31050 7.51910 7.59899 7.70524 8.15285 8.31849 9.07058 9.73511 10.50238 11.36472 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.034138 B = 0.001571 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.995738 B =17814.577300 C =17970.173550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.077 4.077 5 C -0.081 4.081 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.067 4.067 9 C -0.102 4.102 10 C 0.515 3.485 11 O -0.529 6.529 12 N -0.700 5.700 13 C 0.096 3.904 14 H 0.131 0.869 15 C -0.178 4.178 16 H 0.101 0.899 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.158 3.842 28 C -0.183 4.183 29 H 0.102 0.898 30 C -0.101 4.101 31 C -0.117 4.117 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.398 0.602 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.051 0.949 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 24.390 -16.546 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.081 4.081 6 C -0.133 4.133 7 C -0.121 4.121 8 C -0.068 4.068 9 C -0.142 4.142 10 C 0.300 3.700 11 O -0.404 6.404 12 N -0.349 5.349 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.199 4.199 16 H 0.119 0.881 17 C 0.061 3.939 18 N -0.323 5.323 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.031 3.969 28 C -0.204 4.204 29 H 0.120 0.880 30 C -0.120 4.120 31 C -0.135 4.135 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.232 0.768 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.070 0.930 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.873 24.619 -15.829 30.065 hybrid contribution -0.313 -1.289 0.020 1.326 sum -7.186 23.330 -15.809 29.083 Atomic orbital electron populations 1.21922 0.95168 1.02253 1.01444 1.21078 0.96145 0.95758 0.97952 1.21858 1.00970 0.95926 1.01780 1.20683 1.01146 0.91243 0.98332 1.19814 0.94698 0.95360 0.98243 1.20945 0.96430 0.95658 1.00235 1.20948 0.99603 0.93045 0.98478 1.19233 0.95127 0.93466 0.98967 1.20683 1.03082 0.92969 0.97482 1.20476 0.79892 0.81738 0.87847 1.90738 1.39805 1.65752 1.44132 1.45417 1.57254 1.09223 1.23010 1.21862 1.00508 0.89869 0.88785 0.85183 1.24568 1.01677 0.92984 1.00712 0.88079 1.21678 0.89437 0.98046 0.84785 1.46046 1.34430 1.16286 1.35568 1.19067 0.99819 0.96893 1.19434 0.90473 1.24872 0.95052 0.99702 1.00794 1.69897 1.02475 1.36236 1.47732 0.86047 0.77369 0.83663 0.78683 1.20399 1.21678 1.21712 1.21060 0.94398 0.90568 0.90831 1.24356 0.94882 1.03491 0.97696 0.87973 1.20951 0.95565 0.95906 0.99531 1.20942 0.99418 0.92915 1.00212 0.92040 0.92786 0.92982 0.91147 0.92649 0.92678 0.92697 0.91042 0.91040 0.86286 0.86321 0.88040 0.87997 0.76806 0.88977 0.95041 0.93630 0.95645 0.93028 0.86266 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.78 37.16 0.33 -0.62 16 2 C -0.09 -0.58 2.91 -90.62 -0.26 -0.84 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.08 -0.56 4.84 -27.89 -0.13 -0.70 16 5 C -0.08 -0.76 4.70 -104.62 -0.49 -1.26 16 6 C -0.11 -1.11 7.98 -39.58 -0.32 -1.43 16 7 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 8 C -0.07 -0.73 4.37 -104.62 -0.46 -1.19 16 9 C -0.10 -0.94 5.83 -29.03 -0.17 -1.11 16 10 C 0.51 7.00 7.82 -10.99 -0.09 6.91 16 11 O -0.53 -9.66 15.60 5.56 0.09 -9.58 16 12 N -0.70 -9.11 5.56 -53.81 -0.30 -9.41 16 13 C 0.10 1.62 5.97 -67.93 -0.41 1.21 16 14 H 0.13 2.55 7.40 -51.93 -0.38 2.16 16 15 C -0.18 -3.34 6.96 -89.29 -0.62 -3.96 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 17 C 0.19 4.46 5.92 -0.38 0.00 4.45 16 18 N -0.60 -15.46 3.45 -165.83 -0.57 -16.04 16 19 C -0.22 -6.27 10.36 -15.05 -0.16 -6.43 16 20 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 21 C -0.01 -0.21 5.42 -17.43 -0.09 -0.30 16 22 N -0.92 -26.94 10.82 55.49 0.60 -26.34 16 23 Si 0.91 21.99 29.56 -169.99 -5.03 16.97 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 C 0.16 3.39 7.05 -2.41 -0.02 3.37 16 28 C -0.18 -3.26 7.05 -89.29 -0.63 -3.89 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 30 C -0.10 -1.08 9.70 -39.59 -0.38 -1.47 16 31 C -0.12 -1.16 9.70 -39.59 -0.38 -1.54 16 32 H 0.06 0.44 6.28 -51.93 -0.33 0.11 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.12 0.96 8.05 -52.49 -0.42 0.53 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.10 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.10 0.71 8.09 -51.92 -0.42 0.29 16 45 H 0.40 3.90 8.83 -40.82 -0.36 3.54 16 46 H 0.09 2.45 6.56 -51.93 -0.34 2.11 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 52 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 419.95 15.07 6.33 6.33 Total: -1.00 -33.30 419.95 -12.19 -45.49 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.98 Total: 3.29 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.33 Total: -10.71 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.27 Total: -51.79 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.30 -12.19 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960895315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.358 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds