Wall clock time and date at job start Wed Apr 1 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47255 * 120.00242 * 2 1 3 5 5 C 1.50708 * 109.46872 * 239.99917 * 2 1 3 6 6 C 1.37970 * 120.07499 * 4.43757 * 5 2 1 7 7 C 1.38337 * 120.14557 * 179.97438 * 6 5 2 8 8 C 1.38384 * 120.29236 * 0.02562 * 7 6 5 9 9 C 1.37937 * 120.14310 * 0.02562 * 8 7 6 10 10 C 1.39556 * 120.06864 * 184.16165 * 5 2 1 11 11 C 1.47846 * 120.14779 * 359.97438 * 10 5 2 12 12 O 1.21555 * 119.99891 * 352.60017 * 11 10 5 13 13 N 1.34776 * 119.99866 * 172.59743 * 11 10 5 14 14 C 1.46504 * 119.99731 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.09000 * 115.51558 * 29.58196 * 15 14 13 17 17 C 1.52996 * 117.44025 * 244.23564 * 15 14 13 18 18 H 1.08996 * 119.54192 * 4.12049 * 17 15 14 19 19 C 1.57694 * 116.10786 * 161.63669 * 17 15 14 20 20 N 1.48146 * 104.67393 * 87.31082 * 19 17 15 21 21 C 1.36939 * 127.83944 * 139.77628 * 20 19 17 22 22 H 1.07996 * 119.99957 * 339.26057 * 21 20 19 23 23 C 1.38816 * 120.00032 * 159.26276 * 21 20 19 24 24 N 1.31621 * 119.99776 * 2.40329 * 23 21 20 25 25 Si 1.86799 * 119.99741 * 182.40216 * 23 21 20 26 26 H 1.48492 * 109.47458 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46951 * 120.00223 * 25 23 21 28 28 H 1.48507 * 109.46715 * 239.99718 * 25 23 21 29 29 C 1.48149 * 104.32301 * 319.77026 * 20 19 17 30 30 C 1.52994 * 117.44088 * 174.99628 * 15 14 13 31 31 H 1.08998 * 119.54374 * 355.88113 * 30 15 14 32 32 H 1.08996 * 109.47174 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46723 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.46974 * 300.00058 * 1 2 3 35 35 H 1.08997 * 109.46856 * 92.57187 * 3 2 1 36 36 H 1.08996 * 109.47312 * 212.57216 * 3 2 1 37 37 H 1.08997 * 109.46685 * 332.57021 * 3 2 1 38 38 H 1.09003 * 109.47462 * 26.65670 * 4 2 1 39 39 H 1.09001 * 109.47402 * 146.65901 * 4 2 1 40 40 H 1.08999 * 109.46886 * 266.66110 * 4 2 1 41 41 H 1.08004 * 119.93371 * 0.02562 * 6 5 2 42 42 H 1.08003 * 119.85821 * 180.02562 * 7 6 5 43 43 H 1.07999 * 119.92696 * 180.02562 * 8 7 6 44 44 H 1.07993 * 120.07065 * 179.97438 * 9 8 7 45 45 H 0.96993 * 120.00338 * 359.97438 * 13 11 10 46 46 H 1.09002 * 109.46828 * 299.99593 * 14 13 11 47 47 H 1.09003 * 109.47214 * 59.99108 * 14 13 11 48 48 H 1.09001 * 110.92324 * 328.23090 * 19 17 15 49 49 H 1.09002 * 109.93904 * 205.88896 * 19 17 15 50 50 H 0.97000 * 119.99574 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.41318 * 280.80274 * 29 20 19 52 52 H 1.09000 * 110.40919 * 158.36758 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.1405 -1.1548 -2.1848 7 6 1.6000 -1.8066 -3.3152 8 6 2.9555 -2.0180 -3.4965 9 6 3.8577 -1.5798 -2.5496 10 6 3.4011 -0.9153 -1.4099 11 6 4.3630 -0.4359 -0.3946 12 8 3.9781 0.2536 0.5295 13 7 5.6666 -0.7635 -0.4937 14 6 6.6196 -0.2890 0.5127 15 6 8.0206 -0.7989 0.1689 16 1 8.2176 -0.9508 -0.8923 17 6 8.6798 -1.7670 1.1533 18 1 8.1197 -2.1153 2.0210 19 6 9.8854 -2.6140 0.5914 20 7 11.0756 -1.7570 0.8001 21 6 12.3236 -2.1390 1.2148 22 1 12.4551 -3.0717 1.7430 23 6 13.4196 -1.3273 0.9561 24 7 13.2530 -0.1686 0.3543 25 14 15.1309 -1.8795 1.4621 26 1 15.0484 -3.2097 2.1169 27 1 15.9969 -1.9721 0.2593 28 1 15.7076 -0.8951 2.4128 29 6 10.6095 -0.3929 0.4583 30 6 9.1811 -0.3124 1.0390 31 1 8.9946 0.4229 1.8217 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 2.2046 1.7696 1.0266 36 1 2.9776 1.4964 -0.5532 37 1 1.3012 2.0890 -0.4734 38 1 1.2953 -1.4450 1.5805 39 1 2.9706 -1.2386 1.0156 40 1 2.2176 0.0059 2.0415 41 1 0.0813 -0.9927 -2.0496 42 1 0.8977 -2.1522 -4.0595 43 1 3.3078 -2.5272 -4.3814 44 1 4.9152 -1.7457 -2.6921 45 1 5.9736 -1.3140 -1.2309 46 1 6.6222 0.8010 0.5252 47 1 6.3278 -0.6628 1.4942 48 1 9.7511 -2.8263 -0.4692 49 1 9.9820 -3.5422 1.1547 50 1 14.0189 0.3984 0.1732 51 1 10.5883 -0.2582 -0.6230 52 1 11.2513 0.3557 0.9229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978351273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:12 Heat of formation + Delta-G solvation = 66.118682 kcal Electronic energy + Delta-G solvation = -29764.596915 eV Core-core repulsion = 25924.499218 eV Total energy + Delta-G solvation = -3840.097696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14728 -39.01726 -38.28733 -36.71409 -34.78377 -33.36406 -31.73994 -30.72522 -30.31095 -27.62847 -27.24657 -27.20868 -26.94629 -25.09302 -23.48953 -23.09166 -21.12907 -20.71993 -19.96696 -19.32311 -19.23682 -18.03589 -16.82582 -16.29208 -15.95442 -15.71348 -15.20131 -15.01969 -14.73166 -14.59040 -14.32237 -14.22991 -13.98151 -13.79645 -13.31062 -13.22391 -12.83878 -12.67343 -12.55538 -12.41086 -12.22228 -11.90853 -11.88264 -11.72666 -11.34120 -11.21707 -11.01476 -10.91029 -10.86863 -10.84511 -10.68125 -10.57014 -10.26472 -10.10629 -9.84210 -9.66171 -9.32017 -9.24970 -9.14477 -9.01718 -8.79564 -8.62360 -6.83775 -5.82997 -3.21023 0.62825 1.07896 2.75228 3.09864 3.35669 3.41783 3.44173 3.61869 4.15920 4.35277 4.42451 4.44643 4.54096 4.70535 4.84543 4.91276 4.95561 5.07047 5.16504 5.18313 5.30144 5.38302 5.43507 5.48837 5.50880 5.55816 5.59607 5.65162 5.77762 5.78339 5.80462 5.81035 5.88224 5.91505 5.94264 5.95280 6.08033 6.11917 6.21333 6.24330 6.25885 6.39475 6.42294 6.51798 6.56118 6.60625 6.65723 6.70160 6.90482 7.34920 7.46975 7.56235 7.71465 8.16597 8.21967 9.09185 9.70760 10.49867 11.30570 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002006 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.997948 B =13952.936636 C =14563.354115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.114 4.114 4 C -0.119 4.119 5 C -0.010 4.010 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.135 4.135 9 C -0.083 4.083 10 C -0.134 4.134 11 C 0.543 3.457 12 O -0.514 6.514 13 N -0.720 5.720 14 C 0.157 3.843 15 C -0.154 4.154 16 H 0.101 0.899 17 C -0.172 4.172 18 H 0.106 0.894 19 C 0.156 3.844 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.914 5.914 25 Si 0.912 3.088 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.182 3.818 30 C -0.162 4.162 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.399 0.601 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.048 0.952 50 H 0.254 0.746 51 H 0.022 0.978 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.461 -1.229 -6.180 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 C -0.171 4.171 4 C -0.176 4.176 5 C -0.011 4.011 6 C -0.152 4.152 7 C -0.112 4.112 8 C -0.153 4.153 9 C -0.102 4.102 10 C -0.137 4.137 11 C 0.331 3.669 12 O -0.392 6.392 13 N -0.372 5.372 14 C 0.034 3.966 15 C -0.174 4.174 16 H 0.119 0.881 17 C -0.192 4.192 18 H 0.124 0.876 19 C 0.029 3.971 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.093 0.907 23 C -0.200 4.200 24 N -0.560 5.560 25 Si 0.742 3.258 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.217 1.217 29 C 0.056 3.944 30 C -0.182 4.182 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.234 0.766 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.040 0.960 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.399 -0.664 -5.475 26.969 hybrid contribution 1.069 -0.549 -0.259 1.229 sum -25.330 -1.213 -5.734 25.999 Atomic orbital electron populations 1.22079 0.94706 1.01541 1.01817 1.19489 0.94401 0.96160 0.92335 1.21942 1.00098 0.92514 1.02522 1.22092 1.00093 0.99588 0.95838 1.20090 0.91472 0.94198 0.95342 1.21193 1.00130 0.99816 0.94104 1.21357 0.95768 0.96922 0.97110 1.21094 0.93285 1.01325 0.99575 1.21339 0.99964 0.95788 0.93086 1.19796 0.93671 1.03736 0.96509 1.18141 0.82040 0.81109 0.85626 1.90898 1.77393 1.37184 1.33712 1.46000 1.07459 1.54116 1.29604 1.20875 0.85840 0.98964 0.90965 1.22553 0.91928 1.05099 0.97773 0.88056 1.24714 1.00371 0.93846 1.00301 0.87588 1.21726 0.85804 0.93074 0.96501 1.45118 1.06801 1.01951 1.77900 1.19019 0.81662 1.05455 1.29509 0.90652 1.25027 0.98008 0.97420 0.99552 1.69868 1.29317 1.10792 1.46006 0.86047 0.84132 0.77983 0.77624 1.20317 1.21541 1.21652 1.21155 0.87377 0.89538 0.96301 1.24213 0.95270 0.97205 1.01546 0.88083 0.92570 0.92608 0.92197 0.92083 0.91688 0.94823 0.94903 0.91708 0.91985 0.85038 0.85723 0.85481 0.85527 0.76579 0.91103 0.91423 0.95560 0.93387 0.93531 0.95997 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 6.76 37.16 0.25 -0.89 16 2 C -0.02 -0.24 0.75 -155.66 -0.12 -0.36 16 3 C -0.11 -1.28 7.58 37.16 0.28 -1.00 16 4 C -0.12 -1.36 7.54 37.16 0.28 -1.08 16 5 C -0.01 -0.10 4.73 -104.23 -0.49 -0.60 16 6 C -0.13 -1.13 8.98 -39.64 -0.36 -1.49 16 7 C -0.09 -0.69 10.04 -39.49 -0.40 -1.09 16 8 C -0.13 -1.04 10.03 -39.64 -0.40 -1.43 16 9 C -0.08 -0.74 9.52 -39.18 -0.37 -1.11 16 10 C -0.13 -1.45 5.31 -104.97 -0.56 -2.00 16 11 C 0.54 6.67 5.98 -12.33 -0.07 6.60 16 12 O -0.51 -7.20 8.80 5.32 0.05 -7.15 16 13 N -0.72 -8.28 5.51 -61.24 -0.34 -8.61 16 14 C 0.16 2.06 5.95 -4.04 -0.02 2.03 16 15 C -0.15 -2.32 5.34 -90.62 -0.48 -2.80 16 16 H 0.10 1.52 8.04 -51.93 -0.42 1.10 16 17 C -0.17 -2.98 7.03 -87.38 -0.61 -3.59 16 18 H 0.11 1.70 8.12 -51.93 -0.42 1.28 16 19 C 0.16 3.20 7.10 -0.57 0.00 3.20 16 20 N -0.59 -15.11 3.38 -166.72 -0.56 -15.67 16 21 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 24 N -0.91 -26.51 10.75 55.49 0.60 -25.92 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.18 4.32 5.70 -2.40 -0.01 4.30 16 30 C -0.16 -3.02 6.77 -89.22 -0.60 -3.62 16 31 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.06 0.39 7.28 -51.93 -0.38 0.02 16 33 H 0.05 0.40 7.70 -51.93 -0.40 0.00 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.72 7.13 -51.93 -0.37 0.35 16 36 H 0.06 0.84 5.47 -51.93 -0.28 0.55 16 37 H 0.03 0.33 7.78 -51.93 -0.40 -0.07 16 38 H 0.03 0.33 7.77 -51.93 -0.40 -0.07 16 39 H 0.06 0.84 4.81 -51.93 -0.25 0.59 16 40 H 0.06 0.75 7.06 -51.93 -0.37 0.38 16 41 H 0.13 0.87 5.90 -52.48 -0.31 0.57 16 42 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.91 6.47 -52.49 -0.34 0.57 16 45 H 0.40 3.85 6.49 -40.82 -0.26 3.58 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 51 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.09 2.48 6.49 -51.93 -0.34 2.15 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -30.65 395.78 -11.55 -42.20 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.29 Total: 4.04 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.94 Total: -11.58 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.30 Total: -50.20 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: 0.05 Total: -7.15 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.65 -11.55 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978351273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.319 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds