Wall clock time and date at job start Wed Apr 1 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 C 1.52997 * 109.47255 * 120.00242 * 2 1 3 5 5 C 1.50708 * 109.46872 * 239.99917 * 2 1 3 6 6 C 1.37970 * 120.07499 * 4.43757 * 5 2 1 7 7 C 1.38337 * 120.14557 * 179.97438 * 6 5 2 8 8 C 1.38384 * 120.29236 * 0.02562 * 7 6 5 9 9 C 1.37937 * 120.14310 * 0.02562 * 8 7 6 10 10 C 1.39556 * 120.06864 * 184.16165 * 5 2 1 11 11 C 1.47846 * 120.14779 * 359.97438 * 10 5 2 12 12 O 1.21555 * 119.99891 * 352.60017 * 11 10 5 13 13 N 1.34776 * 119.99866 * 172.59743 * 11 10 5 14 14 C 1.46504 * 119.99731 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47145 * 179.97438 * 14 13 11 16 16 H 1.09000 * 115.51558 * 29.58196 * 15 14 13 17 17 C 1.52996 * 117.44025 * 244.23564 * 15 14 13 18 18 H 1.08996 * 119.54192 * 4.12049 * 17 15 14 19 19 C 1.57694 * 116.10786 * 161.63669 * 17 15 14 20 20 N 1.48146 * 104.67393 * 87.31082 * 19 17 15 21 21 C 1.36939 * 127.83944 * 139.77628 * 20 19 17 22 22 H 1.07996 * 119.99957 * 339.26057 * 21 20 19 23 23 C 1.38816 * 120.00032 * 159.26276 * 21 20 19 24 24 N 1.31621 * 119.99776 * 2.40329 * 23 21 20 25 25 Si 1.86799 * 119.99741 * 182.40216 * 23 21 20 26 26 H 1.48492 * 109.47458 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46951 * 120.00223 * 25 23 21 28 28 H 1.48507 * 109.46715 * 239.99718 * 25 23 21 29 29 C 1.48149 * 104.32301 * 319.77026 * 20 19 17 30 30 C 1.52994 * 117.44088 * 174.99628 * 15 14 13 31 31 H 1.08998 * 119.54374 * 355.88113 * 30 15 14 32 32 H 1.08996 * 109.47174 * 60.00229 * 1 2 3 33 33 H 1.09000 * 109.46723 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.46974 * 300.00058 * 1 2 3 35 35 H 1.08997 * 109.46856 * 92.57187 * 3 2 1 36 36 H 1.08996 * 109.47312 * 212.57216 * 3 2 1 37 37 H 1.08997 * 109.46685 * 332.57021 * 3 2 1 38 38 H 1.09003 * 109.47462 * 26.65670 * 4 2 1 39 39 H 1.09001 * 109.47402 * 146.65901 * 4 2 1 40 40 H 1.08999 * 109.46886 * 266.66110 * 4 2 1 41 41 H 1.08004 * 119.93371 * 0.02562 * 6 5 2 42 42 H 1.08003 * 119.85821 * 180.02562 * 7 6 5 43 43 H 1.07999 * 119.92696 * 180.02562 * 8 7 6 44 44 H 1.07993 * 120.07065 * 179.97438 * 9 8 7 45 45 H 0.96993 * 120.00338 * 359.97438 * 13 11 10 46 46 H 1.09002 * 109.46828 * 299.99593 * 14 13 11 47 47 H 1.09003 * 109.47214 * 59.99108 * 14 13 11 48 48 H 1.09001 * 110.92324 * 328.23090 * 19 17 15 49 49 H 1.09002 * 109.93904 * 205.88896 * 19 17 15 50 50 H 0.97000 * 119.99574 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.41318 * 280.80274 * 29 20 19 52 52 H 1.09000 * 110.40919 * 158.36758 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0323 -0.7105 -1.2305 6 6 1.1405 -1.1548 -2.1848 7 6 1.6000 -1.8066 -3.3152 8 6 2.9555 -2.0180 -3.4965 9 6 3.8577 -1.5798 -2.5496 10 6 3.4011 -0.9153 -1.4099 11 6 4.3630 -0.4359 -0.3946 12 8 3.9781 0.2536 0.5295 13 7 5.6666 -0.7635 -0.4937 14 6 6.6196 -0.2890 0.5127 15 6 8.0206 -0.7989 0.1689 16 1 8.2176 -0.9508 -0.8923 17 6 8.6798 -1.7670 1.1533 18 1 8.1197 -2.1153 2.0210 19 6 9.8854 -2.6140 0.5914 20 7 11.0756 -1.7570 0.8001 21 6 12.3236 -2.1390 1.2148 22 1 12.4551 -3.0717 1.7430 23 6 13.4196 -1.3273 0.9561 24 7 13.2530 -0.1686 0.3543 25 14 15.1309 -1.8795 1.4621 26 1 15.0484 -3.2097 2.1169 27 1 15.9969 -1.9721 0.2593 28 1 15.7076 -0.8951 2.4128 29 6 10.6095 -0.3929 0.4583 30 6 9.1811 -0.3124 1.0390 31 1 8.9946 0.4229 1.8217 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8899 35 1 2.2046 1.7696 1.0266 36 1 2.9776 1.4964 -0.5532 37 1 1.3012 2.0890 -0.4734 38 1 1.2953 -1.4450 1.5805 39 1 2.9706 -1.2386 1.0156 40 1 2.2176 0.0059 2.0415 41 1 0.0813 -0.9927 -2.0496 42 1 0.8977 -2.1522 -4.0595 43 1 3.3078 -2.5272 -4.3814 44 1 4.9152 -1.7457 -2.6921 45 1 5.9736 -1.3140 -1.2309 46 1 6.6222 0.8010 0.5252 47 1 6.3278 -0.6628 1.4942 48 1 9.7511 -2.8263 -0.4692 49 1 9.9820 -3.5422 1.1547 50 1 14.0189 0.3984 0.1732 51 1 10.5883 -0.2582 -0.6230 52 1 11.2513 0.3557 0.9229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978351273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:11 Heat of formation + Delta-G solvation = 50.552621 kcal Electronic energy + Delta-G solvation = -29765.271910 eV Core-core repulsion = 25924.499218 eV Total energy + Delta-G solvation = -3840.772691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95181 -40.40332 -39.25547 -37.49939 -36.11184 -34.89614 -32.91320 -32.12389 -30.98325 -28.96182 -28.63521 -28.12102 -28.07523 -26.72559 -24.38690 -23.76100 -22.79200 -21.83706 -21.13936 -20.82494 -20.07101 -18.92722 -18.76549 -17.25061 -16.88881 -16.67889 -16.61504 -16.08213 -15.77786 -15.65526 -15.30850 -15.24971 -15.05179 -14.81707 -14.62769 -14.54831 -14.40438 -13.96532 -13.37481 -13.25125 -13.16326 -13.13692 -12.94093 -12.81293 -12.78035 -12.64962 -12.38378 -12.28159 -12.10574 -11.94912 -11.88278 -11.81210 -11.70870 -11.58524 -11.38616 -10.98239 -10.68829 -10.66983 -10.40087 -9.96730 -9.81049 -9.60644 -8.86077 -7.93272 -5.33480 -0.05839 0.45687 1.45701 1.46191 1.57248 1.94553 2.13421 2.46007 2.76053 2.92396 3.25484 3.60299 3.64595 3.70271 3.74158 3.85731 3.89943 4.09209 4.19769 4.22783 4.25915 4.26622 4.31974 4.42059 4.52848 4.54758 4.58798 4.67114 4.74370 4.81362 4.84405 4.91624 4.92502 4.93721 4.98193 5.01562 5.08160 5.20006 5.22158 5.24272 5.27739 5.34078 5.42994 5.45697 5.48256 5.52112 5.53708 5.54758 5.59278 5.67779 5.74266 6.00861 6.20379 6.58136 7.00819 7.26468 7.66699 8.46948 9.19804 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002006 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.997948 B =13952.936636 C =14563.354115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C -0.107 4.107 4 C -0.114 4.114 5 C -0.026 4.026 6 C -0.139 4.139 7 C -0.089 4.089 8 C -0.137 4.137 9 C -0.089 4.089 10 C -0.155 4.155 11 C 0.540 3.460 12 O -0.537 6.537 13 N -0.715 5.715 14 C 0.168 3.832 15 C -0.114 4.114 16 H 0.108 0.892 17 C -0.159 4.159 18 H 0.127 0.873 19 C 0.149 3.851 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.061 4.061 24 N -0.945 5.945 25 Si 0.980 3.020 26 H -0.264 1.264 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.188 3.812 30 C -0.178 4.178 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.409 0.591 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.032 0.968 49 H 0.054 0.946 50 H 0.250 0.750 51 H 0.002 0.998 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.827 -2.783 -7.298 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.165 4.165 4 C -0.171 4.171 5 C -0.027 4.027 6 C -0.156 4.156 7 C -0.107 4.107 8 C -0.154 4.154 9 C -0.108 4.108 10 C -0.158 4.158 11 C 0.330 3.670 12 O -0.417 6.417 13 N -0.368 5.368 14 C 0.045 3.955 15 C -0.133 4.133 16 H 0.125 0.875 17 C -0.179 4.179 18 H 0.145 0.855 19 C 0.024 3.976 20 N -0.345 5.345 21 C -0.371 4.371 22 H 0.097 0.903 23 C -0.254 4.254 24 N -0.593 5.593 25 Si 0.808 3.192 26 H -0.188 1.188 27 H -0.217 1.217 28 H -0.218 1.218 29 C 0.063 3.937 30 C -0.198 4.198 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.246 0.754 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.020 0.980 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.795 -2.249 -6.603 29.628 hybrid contribution 1.744 -0.092 0.035 1.747 sum -27.051 -2.341 -6.569 27.936 Atomic orbital electron populations 1.22043 0.92780 1.02390 1.02491 1.19480 0.95941 0.95118 0.92028 1.21851 0.99494 0.93822 1.01290 1.22007 0.99576 0.99298 0.96178 1.20188 0.91695 0.94982 0.95847 1.21443 1.00773 0.99486 0.93914 1.21748 0.96277 0.95574 0.97085 1.21443 0.93372 1.00746 0.99887 1.21557 1.01061 0.95444 0.92728 1.19779 0.93642 1.05393 0.97008 1.18473 0.82234 0.80623 0.85718 1.90890 1.77782 1.38223 1.34756 1.45864 1.07122 1.54286 1.29562 1.20623 0.84867 0.98630 0.91410 1.22438 0.91546 1.01862 0.97431 0.87453 1.24641 0.99646 0.91997 1.01569 0.85523 1.21882 0.85332 0.93266 0.97111 1.45428 1.07516 1.03465 1.78097 1.19384 0.83037 1.05422 1.29218 0.90323 1.25864 1.01758 0.97586 1.00238 1.70073 1.29877 1.11803 1.47520 0.84999 0.79292 0.77937 0.77015 1.18843 1.21650 1.21819 1.20860 0.89754 0.88258 0.94873 1.23892 0.93782 0.98805 1.03354 0.87265 0.91348 0.91630 0.92110 0.93531 0.93677 0.93680 0.93979 0.93434 0.93494 0.83269 0.82849 0.83120 0.84290 0.75389 0.91496 0.91498 0.94979 0.92768 0.94064 0.98035 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 6.76 71.98 0.49 -1.46 16 2 C -0.03 -0.51 0.75 -52.92 -0.04 -0.54 16 3 C -0.11 -2.42 7.58 71.98 0.55 -1.87 16 4 C -0.11 -2.58 7.54 71.98 0.54 -2.04 16 5 C -0.03 -0.50 4.73 -19.61 -0.09 -0.59 16 6 C -0.14 -1.94 8.98 22.23 0.20 -1.74 16 7 C -0.09 -1.00 10.04 22.33 0.22 -0.77 16 8 C -0.14 -1.66 10.03 22.23 0.22 -1.44 16 9 C -0.09 -1.40 9.52 22.53 0.21 -1.18 16 10 C -0.16 -3.17 5.31 -20.09 -0.11 -3.27 16 11 C 0.54 13.01 5.98 86.79 0.52 13.53 16 12 O -0.54 -15.22 8.80 -3.89 -0.03 -15.26 16 13 N -0.72 -15.57 5.51 -465.95 -2.57 -18.14 16 14 C 0.17 4.21 5.95 86.38 0.51 4.73 16 15 C -0.11 -3.26 5.34 -10.80 -0.06 -3.32 16 16 H 0.11 3.03 8.04 -2.39 -0.02 3.01 16 17 C -0.16 -5.26 7.03 -8.70 -0.06 -5.32 16 18 H 0.13 3.74 8.12 -2.39 -0.02 3.72 16 19 C 0.15 6.06 7.10 87.73 0.62 6.68 16 20 N -0.62 -32.11 3.38 -681.39 -2.30 -34.41 16 21 C -0.24 -13.60 10.35 84.03 0.87 -12.73 16 22 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.06 -3.44 5.48 84.86 0.47 -2.98 16 24 N -0.95 -56.81 10.75 21.65 0.23 -56.58 16 25 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 29 C 0.19 9.25 5.70 86.54 0.49 9.74 16 30 C -0.18 -6.62 6.77 -9.89 -0.07 -6.69 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.07 0.78 7.28 -2.39 -0.02 0.77 16 33 H 0.06 0.79 7.70 -2.39 -0.02 0.77 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 1.14 7.13 -2.39 -0.02 1.12 16 36 H 0.04 1.18 5.47 -2.39 -0.01 1.17 16 37 H 0.04 0.86 7.78 -2.39 -0.02 0.84 16 38 H 0.04 0.83 7.77 -2.39 -0.02 0.81 16 39 H 0.05 1.23 4.81 -2.39 -0.01 1.22 16 40 H 0.05 1.17 7.06 -2.39 -0.02 1.15 16 41 H 0.15 1.48 5.90 -2.91 -0.02 1.46 16 42 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.14 1.69 6.47 -2.91 -0.02 1.67 16 45 H 0.41 7.14 6.49 -92.71 -0.60 6.54 16 46 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 48 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 51 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 52 H 0.05 3.07 6.49 -2.39 -0.02 3.06 16 Total: -1.00 -68.90 395.78 3.17 -65.73 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.32 Total: 22.45 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 5.49 Total: -11.27 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.64 Total: -109.12 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.03 Total: -15.26 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.90 3.17 -65.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978351273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.281 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds