Wall clock time and date at job start Wed Apr 1 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46984 * 2 1 4 4 C 1.52995 * 109.47078 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47107 * 180.02562 * 4 3 2 6 6 C 1.38360 * 119.85741 * 90.00210 * 5 4 3 7 7 C 1.37955 * 120.14746 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.84939 * 0.02562 * 7 6 5 9 9 C 1.47850 * 120.14299 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99987 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99577 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47047 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.51587 * 29.58306 * 13 12 11 15 15 C 1.53000 * 117.44331 * 244.24327 * 13 12 11 16 16 H 1.09001 * 119.53944 * 4.10818 * 15 13 12 17 17 C 1.54387 * 118.12289 * 160.80657 * 15 13 12 18 18 N 1.48153 * 104.61823 * 87.18782 * 17 15 13 19 19 C 1.36935 * 127.83896 * 140.38857 * 18 17 15 20 20 H 1.07993 * 120.00243 * 195.57735 * 19 18 17 21 21 C 1.38816 * 119.99782 * 15.58662 * 19 18 17 22 22 N 1.31619 * 120.00138 * 9.09473 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 189.09866 * 21 19 18 24 24 H 1.48507 * 109.46848 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47111 * 119.99530 * 23 21 19 26 26 H 1.48494 * 109.47379 * 239.99942 * 23 21 19 27 27 C 1.48145 * 104.32384 * 320.41492 * 18 17 15 28 28 C 1.52995 * 117.44411 * 174.99840 * 13 12 11 29 29 H 1.08994 * 119.54551 * 355.88212 * 28 13 12 30 30 C 1.39569 * 119.71604 * 0.26278 * 8 7 6 31 31 C 1.37965 * 119.85042 * 359.46333 * 30 8 7 32 32 H 1.08999 * 109.47487 * 300.00168 * 1 2 3 33 33 H 1.08998 * 109.46815 * 60.00658 * 1 2 3 34 34 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47054 * 239.99916 * 2 1 3 36 36 H 1.09003 * 109.46594 * 119.99764 * 2 1 3 37 37 H 1.09002 * 109.47647 * 59.99531 * 3 2 1 38 38 H 1.09006 * 109.47155 * 299.99869 * 3 2 1 39 39 H 1.08999 * 109.47397 * 59.99830 * 4 3 2 40 40 H 1.09001 * 109.47285 * 299.99556 * 4 3 2 41 41 H 1.07997 * 119.92405 * 359.97257 * 6 5 4 42 42 H 1.07993 * 120.07765 * 180.02562 * 7 6 5 43 43 H 0.96992 * 120.00125 * 359.97438 * 11 9 8 44 44 H 1.09000 * 109.47711 * 60.00227 * 12 11 9 45 45 H 1.08996 * 109.47543 * 299.99333 * 12 11 9 46 46 H 1.09002 * 110.40648 * 205.96661 * 17 15 13 47 47 H 1.08996 * 110.40906 * 328.40609 * 17 15 13 48 48 H 0.97002 * 119.99810 * 179.97438 * 22 21 19 49 49 H 1.08996 * 110.40663 * 280.80373 * 27 18 17 50 50 H 1.08998 * 110.41030 * 158.36971 * 27 18 17 51 51 H 1.07998 * 120.08024 * 179.72365 * 30 8 7 52 52 H 1.07999 * 119.92969 * 180.28252 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3014 3.5124 1.2015 7 6 4.7617 4.8129 1.2091 8 6 4.9958 5.4740 0.0023 9 6 5.4886 6.8679 0.0028 10 8 5.6912 7.4405 1.0558 11 7 5.7131 7.5038 -1.1641 12 6 6.2020 8.8848 -1.1635 13 6 6.3724 9.3661 -2.6058 14 1 5.6978 8.9157 -3.3339 15 6 7.7894 9.7042 -3.0735 16 1 8.6319 9.5320 -2.4037 17 6 8.0628 9.7501 -4.5923 18 7 7.7237 11.1359 -4.9916 19 6 8.3836 11.9385 -5.8835 20 1 8.1890 13.0006 -5.9008 21 6 9.3027 11.3868 -6.7655 22 7 9.4109 10.0793 -6.8706 23 14 10.3859 12.5001 -7.8031 24 1 10.0708 13.9194 -7.5003 25 1 11.8130 12.2321 -7.4920 26 1 10.1345 12.2339 -9.2423 27 6 6.5090 11.4567 -4.2065 28 6 6.7648 10.8294 -2.8191 29 1 6.8441 11.4953 -1.9599 30 6 4.7569 4.8156 -1.2049 31 6 4.3020 3.5131 -1.1985 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.6766 1.9563 -0.8900 39 1 3.9337 0.9285 -0.8891 40 1 3.9329 0.9288 0.8909 41 1 4.1194 2.9998 2.1345 42 1 4.9406 5.3183 2.1466 43 1 5.5518 7.0468 -2.0043 44 1 7.1623 8.9301 -0.6499 45 1 5.4844 9.5240 -0.6493 46 1 9.1134 9.5423 -4.7958 47 1 7.4252 9.0372 -5.1150 48 1 10.0529 9.6938 -7.4872 49 1 5.6287 11.0102 -4.6689 50 1 6.3871 12.5363 -4.1189 51 1 4.9317 5.3231 -2.1421 52 1 4.1210 3.0009 -2.1319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978424293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:15 Heat of formation + Delta-G solvation = 22.791147 kcal Electronic energy + Delta-G solvation = -27966.380642 eV Core-core repulsion = 24124.404122 eV Total energy + Delta-G solvation = -3841.976519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.41769 -39.14338 -38.51343 -36.11315 -35.03826 -33.44538 -32.71114 -31.31200 -30.80447 -29.26835 -27.35137 -27.09276 -25.31374 -24.45758 -22.91919 -22.26426 -21.46016 -21.16180 -20.56985 -19.82617 -19.27435 -18.05324 -16.83738 -16.50146 -15.87545 -15.73664 -15.33099 -15.19531 -14.88967 -14.75396 -14.51015 -14.25074 -13.91709 -13.74252 -13.53293 -13.31614 -13.23757 -12.99469 -12.89047 -12.68193 -12.65047 -12.06308 -11.83121 -11.79038 -11.59543 -11.32494 -11.26155 -11.16300 -11.11269 -10.97514 -10.85547 -10.70893 -10.30923 -10.12007 -10.06743 -9.76117 -9.44544 -9.28448 -9.12364 -9.10204 -8.87490 -8.65624 -6.88436 -5.81785 -3.15887 0.58752 1.08573 2.70853 3.06897 3.36538 3.42833 3.45183 3.62552 4.13436 4.21892 4.37583 4.44505 4.55331 4.56480 4.59518 4.70353 4.79886 4.86499 4.89946 5.05928 5.17914 5.21003 5.23344 5.30866 5.35622 5.36129 5.41816 5.42686 5.49724 5.53113 5.59764 5.69446 5.70555 5.75880 5.79517 5.89798 5.90137 5.91447 5.93344 6.00888 6.10826 6.22035 6.24289 6.34467 6.53634 6.59479 6.64997 6.70353 6.90684 7.33590 7.44745 7.51370 7.70346 8.13391 8.19136 9.09397 9.72152 10.49100 11.32631 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.001627 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.428269 B =17204.468628 C =18143.199598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.059 4.059 6 C -0.127 4.127 7 C -0.058 4.058 8 C -0.137 4.137 9 C 0.556 3.444 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.155 3.845 13 C -0.151 4.151 14 H 0.102 0.898 15 C -0.168 4.168 16 H 0.102 0.898 17 C 0.184 3.816 18 N -0.595 5.595 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.154 3.846 28 C -0.165 4.165 29 H 0.105 0.895 30 C -0.081 4.081 31 C -0.125 4.125 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.402 0.598 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.023 0.977 48 H 0.254 0.746 49 H 0.025 0.975 50 H 0.051 0.949 51 H 0.128 0.872 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.903 -19.648 15.033 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.122 4.122 5 C -0.059 4.059 6 C -0.145 4.145 7 C -0.076 4.076 8 C -0.140 4.140 9 C 0.343 3.657 10 O -0.421 6.421 11 N -0.369 5.369 12 C 0.032 3.968 13 C -0.170 4.170 14 H 0.120 0.880 15 C -0.188 4.188 16 H 0.120 0.880 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.742 3.258 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.028 3.972 28 C -0.185 4.185 29 H 0.123 0.877 30 C -0.100 4.100 31 C -0.143 4.143 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.237 0.763 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.041 0.959 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.069 0.931 51 H 0.146 0.854 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.556 -19.164 15.538 28.645 hybrid contribution 0.552 0.328 -0.973 1.166 sum -14.004 -18.836 14.565 27.623 Atomic orbital electron populations 1.21779 0.95800 1.01621 1.01938 1.21546 0.95980 0.96659 1.02084 1.21614 0.94005 0.96959 1.02681 1.20701 0.95892 0.92346 1.03272 1.20119 0.96490 0.96151 0.93164 1.21016 1.00986 0.94708 0.97825 1.21265 0.94682 0.93917 0.97776 1.19971 1.05058 0.94422 0.94525 1.18283 0.77647 0.85914 0.83851 1.90764 1.52409 1.67753 1.31198 1.45951 1.67214 1.15310 1.08470 1.20889 0.99569 0.80882 0.95478 1.22525 1.00041 0.99052 0.95397 0.87957 1.24380 0.90587 1.02635 1.01153 0.87989 1.21060 1.01791 0.86268 0.85091 1.45221 1.26256 1.12906 1.47434 1.19055 1.17501 0.89673 1.09231 0.90502 1.24893 1.01133 0.95923 0.98346 1.69907 1.37975 1.08902 1.39443 0.86045 0.80289 0.79651 0.79768 1.20334 1.21606 1.21695 1.21141 0.90472 0.97405 0.88192 1.23850 1.05216 0.89347 1.00113 0.87743 1.21357 0.96670 0.94848 0.97146 1.20995 1.00720 0.94652 0.97905 0.92734 0.92671 0.92777 0.91930 0.91996 0.91714 0.91638 0.90662 0.90751 0.85485 0.84685 0.76267 0.91226 0.91123 0.89244 0.95949 0.93627 0.95777 0.93058 0.85376 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.13 -0.58 5.93 -26.73 -0.16 -0.73 16 3 C -0.12 -0.61 5.20 -26.74 -0.14 -0.74 16 4 C -0.08 -0.47 5.34 -27.88 -0.15 -0.61 16 5 C -0.06 -0.45 5.14 -104.53 -0.54 -0.99 16 6 C -0.13 -1.05 9.68 -39.64 -0.38 -1.43 16 7 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 8 C -0.14 -1.54 5.87 -104.97 -0.62 -2.15 16 9 C 0.56 7.60 7.77 -12.33 -0.10 7.51 16 10 O -0.54 -9.23 16.35 5.32 0.09 -9.15 16 11 N -0.72 -8.88 5.51 -61.25 -0.34 -9.22 16 12 C 0.15 2.13 5.95 -4.04 -0.02 2.10 16 13 C -0.15 -2.30 5.39 -90.62 -0.49 -2.79 16 14 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 15 C -0.17 -3.13 6.74 -89.22 -0.60 -3.73 16 16 H 0.10 1.84 8.12 -51.93 -0.42 1.42 16 17 C 0.18 4.34 5.70 -2.41 -0.01 4.33 16 18 N -0.59 -15.15 3.38 -168.86 -0.57 -15.72 16 19 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 20 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 21 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 22 N -0.92 -26.63 10.86 55.49 0.60 -26.03 16 23 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.15 3.20 7.04 -2.40 -0.02 3.18 16 28 C -0.16 -2.89 6.85 -89.21 -0.61 -3.50 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 30 C -0.08 -0.75 9.54 -39.19 -0.37 -1.12 16 31 C -0.12 -0.99 9.68 -39.64 -0.38 -1.38 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 40 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 43 H 0.40 4.10 6.44 -40.82 -0.26 3.84 16 44 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.09 2.38 6.51 -51.93 -0.34 2.05 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.13 0.96 6.41 -52.49 -0.34 0.62 16 52 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 421.31 15.07 6.35 6.35 Total: -1.00 -32.20 421.31 -12.64 -44.84 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.90 Total: 2.18 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -4.85 Total: -10.08 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.30 Total: -50.97 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.20 -12.64 -44.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978424293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.631 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds