Wall clock time and date at job start Wed Apr 1 2020 01:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47203 * 120.00153 * 2 1 3 5 5 C 1.50698 * 109.47473 * 65.00414 * 4 2 1 6 6 C 1.38357 * 119.85600 * 89.99715 * 5 4 2 7 7 C 1.37956 * 120.14248 * 180.02562 * 6 5 4 8 8 C 1.39577 * 119.85573 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.14438 * 179.97438 * 8 7 6 10 10 O 1.21554 * 120.00295 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99881 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99909 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47240 * 179.97438 * 12 11 9 14 14 H 1.09004 * 115.51215 * 29.58579 * 13 12 11 15 15 C 1.52999 * 117.44445 * 244.24309 * 13 12 11 16 16 H 1.09002 * 119.53971 * 4.11484 * 15 13 12 17 17 C 1.54389 * 118.12073 * 160.81098 * 15 13 12 18 18 N 1.48147 * 104.61950 * 87.19057 * 17 15 13 19 19 C 1.36935 * 127.84036 * 140.39282 * 18 17 15 20 20 H 1.07994 * 119.99921 * 195.57623 * 19 18 17 21 21 C 1.38816 * 119.99782 * 15.58064 * 19 18 17 22 22 N 1.31619 * 120.00138 * 9.09473 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 189.09866 * 21 19 18 24 24 H 1.48504 * 109.46960 * 89.99637 * 23 21 19 25 25 H 1.48498 * 109.47101 * 209.99996 * 23 21 19 26 26 H 1.48500 * 109.47106 * 329.99992 * 23 21 19 27 27 C 1.48141 * 104.32362 * 320.41087 * 18 17 15 28 28 C 1.52995 * 117.44567 * 174.99763 * 13 12 11 29 29 H 1.09003 * 119.54306 * 355.88836 * 28 13 12 30 30 C 1.39579 * 119.71228 * 0.25399 * 8 7 6 31 31 C 1.37965 * 119.84790 * 359.47213 * 30 8 7 32 32 H 1.08998 * 109.47557 * 60.00095 * 1 2 3 33 33 H 1.09005 * 109.47245 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47432 * 299.99552 * 1 2 3 35 35 H 1.09002 * 109.47432 * 240.00448 * 2 1 3 36 36 H 1.09007 * 109.47418 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47387 * 300.00284 * 3 2 1 38 38 H 1.09005 * 109.47143 * 60.00040 * 3 2 1 39 39 H 1.08999 * 109.47536 * 304.99679 * 4 2 1 40 40 H 1.09006 * 109.47038 * 184.99793 * 4 2 1 41 41 H 1.07998 * 119.92844 * 0.02562 * 6 5 4 42 42 H 1.08003 * 120.07453 * 180.02562 * 7 6 5 43 43 H 0.96992 * 119.99793 * 359.97438 * 11 9 8 44 44 H 1.09005 * 109.47172 * 60.00177 * 12 11 9 45 45 H 1.09000 * 109.47557 * 300.00272 * 12 11 9 46 46 H 1.09001 * 110.40535 * 205.97193 * 17 15 13 47 47 H 1.08996 * 110.40602 * 328.40385 * 17 15 13 48 48 H 0.97002 * 119.99810 * 179.97438 * 22 21 19 49 49 H 1.09008 * 110.41013 * 280.80606 * 27 18 17 50 50 H 1.08998 * 110.41017 * 158.37412 * 27 18 17 51 51 H 1.07996 * 120.07478 * 179.72364 * 30 8 7 52 52 H 1.07995 * 119.92423 * 180.27777 * 31 30 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1888 6 6 2.4846 -3.0948 0.5937 7 6 2.1254 -4.4255 0.5347 8 6 0.9082 -4.8413 1.0766 9 6 0.5167 -6.2657 1.0164 10 8 1.2556 -7.0777 0.4946 11 7 -0.6597 -6.6639 1.5401 12 6 -1.0474 -8.0755 1.4810 13 6 -2.4153 -8.2567 2.1418 14 1 -3.0823 -7.3964 2.0842 15 6 -2.4790 -9.1136 3.4077 16 1 -1.5577 -9.5081 3.8365 17 6 -3.7045 -8.9548 4.3331 18 7 -4.7110 -9.8936 3.7851 19 6 -5.5741 -10.6990 4.4791 20 1 -6.0770 -11.5116 3.9761 21 6 -5.8024 -10.4709 5.8292 22 7 -5.3349 -9.3815 6.4010 23 14 -6.7733 -11.7103 6.8347 24 1 -5.8444 -12.7128 7.4156 25 1 -7.4902 -11.0072 7.9288 26 1 -7.7571 -12.3962 5.9590 27 6 -4.5717 -9.7638 2.3160 28 6 -3.0508 -9.6470 2.0776 29 1 -2.5556 -10.4389 1.5157 30 6 0.0596 -3.9057 1.6704 31 6 0.4333 -2.5788 1.7278 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1300 1.4426 0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6766 1.9563 0.8900 39 1 1.6054 -0.2618 2.1370 40 1 3.1263 -0.6444 1.2951 41 1 3.4260 -2.7717 0.1744 42 1 2.7846 -5.1440 0.0703 43 1 -1.2491 -6.0161 1.9568 44 1 -0.3072 -8.6780 2.0076 45 1 -1.1012 -8.3942 0.4400 46 1 -3.4464 -9.2289 5.3560 47 1 -4.0789 -7.9318 4.2958 48 1 -5.4948 -9.2220 7.3443 49 1 -5.0816 -8.8671 1.9636 50 1 -4.9679 -10.6482 1.8170 51 1 -0.8856 -4.2202 2.0875 52 1 -0.2203 -1.8546 2.1909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979033414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:27 Heat of formation + Delta-G solvation = 26.331431 kcal Electronic energy + Delta-G solvation = -28362.407518 eV Core-core repulsion = 24520.584517 eV Total energy + Delta-G solvation = -3841.823001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.45886 -39.22455 -38.58139 -36.44430 -35.03610 -33.41530 -32.00368 -31.28433 -30.75560 -28.02706 -27.54614 -27.15933 -26.64193 -24.83673 -23.08426 -22.59657 -21.16055 -20.77220 -20.33303 -19.82586 -19.27296 -18.05301 -16.83701 -16.38280 -16.07767 -15.39634 -15.32842 -15.18035 -14.80440 -14.69923 -14.64801 -14.21699 -13.94425 -13.76043 -13.53679 -13.22126 -13.17479 -12.85448 -12.67359 -12.62784 -12.57730 -12.33488 -12.02334 -11.83319 -11.41646 -11.27466 -11.23929 -11.16711 -11.11467 -11.05829 -10.85241 -10.70563 -10.30839 -10.14030 -10.06252 -9.75791 -9.44343 -9.26713 -9.12055 -9.09317 -8.86642 -8.64993 -6.88515 -5.81496 -3.15753 0.59425 1.09010 2.71254 3.07215 3.37311 3.42688 3.44370 3.62913 4.13632 4.25949 4.35854 4.44662 4.52117 4.56746 4.58614 4.70346 4.86714 4.88492 5.00673 5.06695 5.20685 5.24766 5.30789 5.31032 5.35816 5.38801 5.42013 5.48358 5.49783 5.52239 5.55467 5.69780 5.74900 5.76748 5.87435 5.90001 5.91322 5.91764 5.93435 6.01747 6.11488 6.22147 6.25285 6.34708 6.53759 6.60028 6.65093 6.70458 6.90764 7.33664 7.45017 7.51282 7.70240 8.13716 8.19390 9.09539 9.72261 10.49256 11.32820 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.001737 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.426445 B =16116.583351 C =17056.797574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.081 4.081 5 C -0.056 4.056 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.137 4.137 9 C 0.556 3.444 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.155 3.845 13 C -0.151 4.151 14 H 0.102 0.898 15 C -0.168 4.168 16 H 0.102 0.898 17 C 0.183 3.817 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 C -0.165 4.165 29 H 0.104 0.896 30 C -0.083 4.083 31 C -0.123 4.123 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.402 0.598 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.023 0.977 48 H 0.254 0.746 49 H 0.024 0.976 50 H 0.051 0.949 51 H 0.128 0.872 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.415 20.161 -12.476 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.118 4.118 5 C -0.056 4.056 6 C -0.146 4.146 7 C -0.076 4.076 8 C -0.140 4.140 9 C 0.343 3.657 10 O -0.421 6.421 11 N -0.370 5.370 12 C 0.032 3.968 13 C -0.170 4.170 14 H 0.120 0.880 15 C -0.188 4.188 16 H 0.120 0.880 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.185 4.185 29 H 0.122 0.878 30 C -0.101 4.101 31 C -0.141 4.141 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.237 0.763 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.041 0.959 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.069 0.931 51 H 0.146 0.854 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.761 19.486 -12.585 28.044 hybrid contribution -0.769 -0.342 0.791 1.155 sum 14.992 19.144 -11.794 27.025 Atomic orbital electron populations 1.21945 0.94965 1.02357 1.01739 1.21084 0.96300 0.95891 0.97711 1.21856 1.00935 0.95778 1.01956 1.20770 1.01412 0.90843 0.98795 1.20086 0.94069 0.95649 0.95836 1.21011 1.00125 0.92597 1.00833 1.21259 0.94820 0.95920 0.95648 1.19962 0.96995 0.93075 1.03931 1.18288 0.81252 0.87921 0.78237 1.90764 1.52002 1.54524 1.44849 1.45953 1.20466 1.10685 1.59848 1.20887 0.94461 0.80812 1.00656 1.22522 0.96247 0.95913 1.02325 0.87963 1.24381 1.01343 1.02644 0.90383 0.87993 1.21060 0.84081 0.92423 0.96651 1.45210 1.40064 1.47628 0.98894 1.19014 1.18329 1.06287 0.91895 0.90542 1.24895 1.00408 0.97341 0.97646 1.69897 1.49955 1.24987 1.11391 0.86105 0.79387 0.80311 0.79874 1.21489 1.21656 1.20526 1.21140 0.90246 0.98380 0.87431 1.23850 0.97845 0.94657 1.02171 0.87752 1.21359 0.98795 0.93087 0.96889 1.21003 0.96578 0.95651 1.00884 0.92762 0.92034 0.92616 0.91020 0.92664 0.92554 0.92574 0.90628 0.90722 0.85513 0.84720 0.76275 0.91235 0.91131 0.89246 0.95947 0.93575 0.95783 0.93065 0.85410 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.75 37.15 0.33 -0.55 16 2 C -0.09 -0.49 2.91 -90.62 -0.26 -0.75 16 3 C -0.15 -0.67 9.19 37.16 0.34 -0.33 16 4 C -0.08 -0.45 4.83 -27.89 -0.13 -0.59 16 5 C -0.06 -0.42 4.72 -104.53 -0.49 -0.91 16 6 C -0.13 -1.04 9.68 -39.64 -0.38 -1.43 16 7 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 8 C -0.14 -1.53 5.87 -104.97 -0.62 -2.14 16 9 C 0.56 7.58 7.77 -12.33 -0.10 7.49 16 10 O -0.54 -9.23 16.35 5.32 0.09 -9.14 16 11 N -0.72 -8.87 5.51 -61.25 -0.34 -9.20 16 12 C 0.15 2.13 5.95 -4.04 -0.02 2.10 16 13 C -0.15 -2.29 5.39 -90.62 -0.49 -2.78 16 14 H 0.10 1.53 8.04 -51.93 -0.42 1.11 16 15 C -0.17 -3.13 6.74 -89.22 -0.60 -3.73 16 16 H 0.10 1.84 8.12 -51.93 -0.42 1.42 16 17 C 0.18 4.34 5.70 -2.41 -0.01 4.33 16 18 N -0.59 -15.15 3.38 -168.86 -0.57 -15.72 16 19 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 22 N -0.92 -26.63 10.86 55.49 0.60 -26.02 16 23 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.15 3.20 7.04 -2.41 -0.02 3.19 16 28 C -0.16 -2.89 6.85 -89.22 -0.61 -3.50 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 30 C -0.08 -0.75 9.54 -39.18 -0.37 -1.12 16 31 C -0.12 -0.96 7.93 -39.64 -0.31 -1.28 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.41 6.26 -51.93 -0.33 0.08 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.23 8.14 -51.92 -0.42 -0.20 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 40 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 1.41 7.65 -52.48 -0.40 1.00 16 43 H 0.40 4.10 6.44 -40.82 -0.26 3.83 16 44 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 2.38 6.51 -51.93 -0.34 2.04 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 52 H 0.13 0.78 8.03 -52.49 -0.42 0.36 16 LS Contribution 416.55 15.07 6.28 6.28 Total: -1.00 -32.11 416.55 -12.15 -44.26 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.80 Total: 2.41 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.39 Total: -9.70 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.30 Total: -50.95 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.11 -12.15 -44.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979033414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.594 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds