Wall clock time and date at job start Wed Apr 1 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 C 1.52998 * 109.47159 * 120.00296 * 2 1 3 5 5 C 1.50695 * 109.47239 * 173.93356 * 4 2 1 6 6 C 1.37983 * 120.07702 * 102.08106 * 5 4 2 7 7 C 1.38337 * 120.14573 * 179.74295 * 6 5 4 8 8 C 1.38379 * 120.29217 * 0.28510 * 7 6 5 9 9 C 1.37937 * 120.14936 * 359.97438 * 8 7 6 10 10 C 1.39563 * 120.07555 * 282.36084 * 5 4 2 11 11 C 1.47845 * 120.13965 * 0.02562 * 10 5 4 12 12 O 1.21560 * 120.00301 * 355.09415 * 11 10 5 13 13 N 1.34780 * 119.99840 * 175.09855 * 11 10 5 14 14 C 1.46501 * 119.99875 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47052 * 179.97438 * 14 13 11 16 16 H 1.09004 * 115.51814 * 330.41734 * 15 14 13 17 17 C 1.52999 * 117.44469 * 184.99936 * 15 14 13 18 18 H 1.09005 * 119.54020 * 4.11702 * 17 15 14 19 19 C 1.54386 * 118.12563 * 160.81285 * 17 15 14 20 20 N 1.48141 * 104.61957 * 87.18757 * 19 17 15 21 21 C 1.36940 * 127.83692 * 140.39399 * 20 19 17 22 22 H 1.07999 * 120.00334 * 194.69764 * 21 20 19 23 23 C 1.38813 * 119.99738 * 14.70258 * 21 20 19 24 24 N 1.31616 * 120.00289 * 9.66917 * 23 21 20 25 25 Si 1.86802 * 119.99564 * 189.67295 * 23 21 20 26 26 H 1.48507 * 109.47177 * 60.00097 * 25 23 21 27 27 H 1.48505 * 109.46959 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47554 * 299.99714 * 25 23 21 29 29 C 1.48141 * 104.32647 * 320.41546 * 20 19 17 30 30 C 1.53008 * 117.44187 * 115.75896 * 15 14 13 31 31 H 1.09002 * 119.53851 * 355.88196 * 30 15 14 32 32 H 1.09006 * 109.47419 * 299.99873 * 1 2 3 33 33 H 1.09002 * 109.47580 * 59.99779 * 1 2 3 34 34 H 1.08996 * 109.47180 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46759 * 240.00440 * 2 1 3 36 36 H 1.08992 * 109.47371 * 185.65417 * 3 2 1 37 37 H 1.08999 * 109.47200 * 305.66441 * 3 2 1 38 38 H 1.09000 * 109.46827 * 65.65313 * 3 2 1 39 39 H 1.08996 * 109.47112 * 53.93180 * 4 2 1 40 40 H 1.09003 * 109.46987 * 293.92946 * 4 2 1 41 41 H 1.07997 * 119.92386 * 0.03133 * 6 5 4 42 42 H 1.07999 * 119.85195 * 180.25811 * 7 6 5 43 43 H 1.08006 * 119.93056 * 179.97438 * 8 7 6 44 44 H 1.07996 * 120.07873 * 179.97438 * 9 8 7 45 45 H 0.96994 * 119.99818 * 359.97438 * 13 11 10 46 46 H 1.08997 * 109.47226 * 299.99544 * 14 13 11 47 47 H 1.09001 * 109.47365 * 59.99981 * 14 13 11 48 48 H 1.08998 * 110.40964 * 205.97615 * 19 17 15 49 49 H 1.09007 * 110.40704 * 328.40730 * 19 17 15 50 50 H 0.97001 * 119.99938 * 179.97438 * 24 23 21 51 51 H 1.09002 * 110.41377 * 280.80146 * 29 20 19 52 52 H 1.09007 * 110.50640 * 158.41608 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5395 -0.8527 1.1764 6 6 4.3443 -0.0042 1.9087 7 6 5.7208 -0.1269 1.8471 8 6 6.3000 -1.0963 1.0472 9 6 5.5071 -1.9475 0.3060 10 6 4.1174 -1.8290 0.3637 11 6 3.2613 -2.7372 -0.4288 12 8 2.0526 -2.6944 -0.3062 13 7 3.8209 -3.6127 -1.2873 14 6 2.9727 -4.5130 -2.0722 15 6 3.8512 -5.3961 -2.9606 16 1 4.7954 -4.9525 -3.2766 17 6 3.1448 -6.3279 -3.9472 18 1 2.0593 -6.2903 -4.0390 19 6 3.9585 -6.8789 -5.1379 20 7 4.6012 -8.1071 -4.6153 21 6 4.7798 -9.3015 -5.2607 22 1 5.0456 -10.1846 -4.6987 23 6 4.6193 -9.3772 -6.6375 24 7 4.4845 -8.2762 -7.3459 25 14 4.5946 -11.0419 -7.4847 26 1 3.4733 -11.8541 -6.9476 27 1 4.4112 -10.8509 -8.9460 28 1 5.8789 -11.7441 -7.2342 29 6 5.0062 -7.7502 -3.2357 30 6 3.8355 -6.9025 -2.6929 31 1 3.2646 -7.2927 -1.8504 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 3.1252 1.4442 -0.1012 37 1 1.5962 1.9848 -0.8349 38 1 1.7617 1.9262 0.9363 39 1 1.5907 -1.7128 1.3051 40 1 1.7681 -0.1486 2.1359 41 1 3.8985 0.7544 2.5349 42 1 6.3462 0.5370 2.4254 43 1 7.3754 -1.1867 1.0032 44 1 5.9604 -2.7034 -0.3181 45 1 4.7853 -3.6466 -1.3853 46 1 2.3888 -5.1408 -1.3992 47 1 2.2995 -3.9256 -2.6967 48 1 3.2978 -7.1205 -5.9705 49 1 4.7142 -6.1572 -5.4483 50 1 4.3728 -8.3291 -8.3080 51 1 5.9254 -7.1645 -3.2489 52 1 5.1372 -8.6482 -2.6318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979089709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:30 Heat of formation + Delta-G solvation = 19.544043 kcal Electronic energy + Delta-G solvation = -29341.382027 eV Core-core repulsion = 25499.264703 eV Total energy + Delta-G solvation = -3842.117324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.53676 -40.48017 -39.21536 -37.22496 -36.21866 -34.98966 -32.92259 -32.35936 -31.99773 -29.01095 -28.80841 -27.96409 -27.47621 -26.51770 -24.49399 -23.01909 -22.43751 -21.92393 -21.25186 -20.86180 -20.65599 -18.89035 -18.69800 -17.25138 -16.88254 -16.72224 -16.33464 -16.21297 -16.12171 -15.67241 -15.46376 -15.22951 -15.05014 -14.73932 -14.57756 -14.45935 -14.22583 -14.09280 -13.45952 -13.37283 -13.30521 -13.18996 -13.03943 -12.88896 -12.75521 -12.68959 -12.56790 -12.35495 -12.17790 -11.99420 -11.96758 -11.77751 -11.75911 -11.59524 -11.43912 -10.98725 -10.71675 -10.69175 -10.44564 -10.11657 -9.82553 -9.58517 -8.92365 -7.92193 -5.28104 -0.06653 0.45290 1.45601 1.49056 1.55476 1.92901 2.09790 2.47149 2.72719 2.91907 3.25294 3.59972 3.67942 3.74722 3.80419 3.84505 3.90769 4.07722 4.17517 4.18167 4.23166 4.25955 4.36539 4.41109 4.48590 4.53294 4.57295 4.64508 4.72253 4.77566 4.80468 4.86500 4.92871 4.93203 5.00589 5.01136 5.05519 5.09196 5.14682 5.22109 5.32865 5.34416 5.40805 5.43826 5.44345 5.47191 5.51821 5.55510 5.58410 5.65900 5.72782 6.01220 6.17255 6.54883 7.00346 7.23485 7.67852 8.45794 9.21254 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.002001 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.483089 B =13989.481399 C =14850.026584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.079 4.079 5 C -0.031 4.031 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.137 4.137 9 C -0.088 4.088 10 C -0.159 4.159 11 C 0.550 3.450 12 O -0.557 6.557 13 N -0.714 5.714 14 C 0.167 3.833 15 C -0.110 4.110 16 H 0.109 0.891 17 C -0.176 4.176 18 H 0.112 0.888 19 C 0.189 3.811 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.081 0.919 23 C -0.064 4.064 24 N -0.948 5.948 25 Si 0.980 3.020 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.274 1.274 29 C 0.149 3.851 30 C -0.160 4.160 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.410 0.590 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.002 0.998 50 H 0.250 0.750 51 H 0.029 0.971 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 21.057 21.298 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.116 4.116 5 C -0.032 4.032 6 C -0.150 4.150 7 C -0.106 4.106 8 C -0.155 4.155 9 C -0.107 4.107 10 C -0.162 4.162 11 C 0.340 3.660 12 O -0.437 6.437 13 N -0.367 5.367 14 C 0.044 3.956 15 C -0.129 4.129 16 H 0.127 0.873 17 C -0.196 4.196 18 H 0.130 0.870 19 C 0.063 3.937 20 N -0.345 5.345 21 C -0.370 4.370 22 H 0.099 0.901 23 C -0.257 4.257 24 N -0.595 5.595 25 Si 0.808 3.192 26 H -0.204 1.204 27 H -0.220 1.220 28 H -0.199 1.199 29 C 0.024 3.976 30 C -0.179 4.179 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.248 0.752 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.020 0.980 50 H 0.059 0.941 51 H 0.046 0.954 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.338 20.908 21.125 29.724 hybrid contribution 0.361 -1.168 -1.187 1.704 sum 0.023 19.740 19.939 28.057 Atomic orbital electron populations 1.21736 0.94962 1.01106 1.01796 1.20879 0.95829 0.95741 0.97195 1.21864 1.00638 0.95291 1.02185 1.20839 0.90447 1.02134 0.98209 1.20142 0.96627 0.92876 0.93512 1.21308 0.93929 0.99551 1.00241 1.21731 0.94881 0.97178 0.96825 1.21434 1.01296 0.95670 0.97057 1.21559 0.91752 0.99044 0.98352 1.19802 0.94147 0.99719 1.02499 1.18639 0.87748 0.80151 0.79504 1.90723 1.15474 1.70638 1.66906 1.45870 1.11281 1.37490 1.42047 1.20635 0.91783 0.90710 0.92521 1.22413 1.00550 0.90518 0.99399 0.87345 1.23917 0.99013 1.03835 0.92838 0.86978 1.20805 0.93262 0.86274 0.93349 1.45525 1.66791 1.10557 1.11616 1.19353 1.41361 0.86315 0.90013 0.90136 1.25733 1.02476 1.00792 0.96730 1.70084 1.56413 1.27469 1.05575 0.85139 0.78341 0.78946 0.76814 1.20405 1.21976 1.19936 1.21292 0.93982 0.96524 0.85848 1.23926 1.00951 0.93685 0.99386 0.85913 0.91703 0.92863 0.93993 0.93676 0.93181 0.92892 0.91443 0.90438 0.90460 0.83712 0.82874 0.83098 0.84259 0.75215 0.91401 0.91417 0.92813 0.97987 0.94114 0.95365 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.00 16 2 C -0.08 -1.58 2.30 -10.79 -0.02 -1.60 16 3 C -0.14 -2.25 8.84 71.98 0.64 -1.61 16 4 C -0.08 -1.57 4.09 29.85 0.12 -1.45 16 5 C -0.03 -0.58 4.45 -19.61 -0.09 -0.66 16 6 C -0.13 -1.79 9.12 22.23 0.20 -1.59 16 7 C -0.09 -0.96 10.04 22.33 0.22 -0.74 16 8 C -0.14 -1.63 10.03 22.23 0.22 -1.40 16 9 C -0.09 -1.37 9.53 22.53 0.21 -1.16 16 10 C -0.16 -3.25 5.83 -20.09 -0.12 -3.37 16 11 C 0.55 13.66 7.27 86.79 0.63 14.30 16 12 O -0.56 -16.78 11.87 -3.90 -0.05 -16.82 16 13 N -0.71 -15.79 5.51 -465.96 -2.57 -18.36 16 14 C 0.17 4.23 5.95 86.38 0.51 4.74 16 15 C -0.11 -3.15 5.39 -10.79 -0.06 -3.20 16 16 H 0.11 3.04 8.04 -2.38 -0.02 3.02 16 17 C -0.18 -6.52 6.85 -9.89 -0.07 -6.59 16 18 H 0.11 3.96 8.14 -2.38 -0.02 3.94 16 19 C 0.19 9.27 5.72 86.53 0.49 9.77 16 20 N -0.62 -32.10 3.38 -688.16 -2.33 -34.43 16 21 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 22 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 23 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 24 N -0.95 -57.17 10.84 21.65 0.23 -56.94 16 25 Si 0.98 45.61 29.56 68.60 2.03 47.63 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 29 C 0.15 6.02 7.04 86.54 0.61 6.63 16 30 C -0.16 -5.31 6.74 -9.88 -0.07 -5.38 16 31 H 0.12 3.65 8.12 -2.39 -0.02 3.63 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 1.17 6.50 -2.39 -0.02 1.16 16 36 H 0.05 0.81 7.24 -2.39 -0.02 0.79 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.96 5.96 -2.39 -0.01 1.94 16 40 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 41 H 0.15 1.34 8.02 -2.91 -0.02 1.32 16 42 H 0.15 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 44 H 0.14 1.66 6.44 -2.91 -0.02 1.64 16 45 H 0.41 7.17 6.46 -92.71 -0.60 6.57 16 46 H 0.07 1.79 7.94 -2.39 -0.02 1.77 16 47 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 3.02 6.47 -2.39 -0.02 3.00 16 49 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 50 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -69.96 409.47 3.07 -66.89 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.31 Total: 23.27 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.44 Total: -11.25 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -4.66 Total: -109.73 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.05 Total: -16.82 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.96 3.07 -66.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979089709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.438 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds