Wall clock time and date at job start Wed Apr 1 2020 01:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46937 * 2 1 4 4 C 1.50691 * 109.47480 * 239.99625 * 2 1 3 5 5 O 1.21280 * 120.00129 * 245.86325 * 4 2 1 6 6 N 1.34780 * 120.00032 * 65.86394 * 4 2 1 7 7 C 1.46501 * 120.00192 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.55257 * 350.58073 * 7 6 4 9 9 C 1.53026 * 117.50188 * 136.27035 * 7 6 4 10 10 C 1.52813 * 117.50115 * 204.89927 * 7 6 4 11 11 C 1.53187 * 117.71390 * 144.89769 * 10 7 6 12 12 C 1.53353 * 108.77080 * 158.88478 * 11 10 7 13 13 N 1.46850 * 108.81353 * 51.30956 * 12 11 10 14 14 C 1.36936 * 120.38287 * 123.07657 * 13 12 11 15 15 H 1.07999 * 120.00447 * 214.07485 * 14 13 12 16 16 C 1.38811 * 120.00061 * 34.06825 * 14 13 12 17 17 N 1.31621 * 120.00024 * 16.72942 * 16 14 13 18 18 Si 1.86797 * 120.00291 * 196.72718 * 16 14 13 19 19 H 1.48505 * 109.47137 * 90.00159 * 18 16 14 20 20 H 1.48498 * 109.47401 * 209.99929 * 18 16 14 21 21 H 1.48496 * 109.47115 * 330.00727 * 18 16 14 22 22 C 1.46843 * 119.23288 * 303.09819 * 13 12 11 23 23 C 1.53185 * 117.71504 * 0.14185 * 10 7 6 24 24 C 1.50707 * 109.46794 * 119.99462 * 2 1 3 25 25 C 1.38232 * 119.99992 * 5.49559 * 24 2 1 26 26 C 1.38238 * 119.99839 * 179.78841 * 25 24 2 27 27 C 1.38233 * 119.99763 * 0.43687 * 26 25 24 28 28 C 1.38236 * 120.00490 * 359.81133 * 27 26 25 29 29 C 1.38229 * 119.99541 * 185.76279 * 24 2 1 30 30 H 1.09000 * 109.46923 * 60.00794 * 1 2 3 31 31 H 1.08997 * 109.47543 * 300.00325 * 1 2 3 32 32 H 1.09005 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46871 * 59.99834 * 3 2 1 34 34 H 1.09000 * 109.46896 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46928 * 299.99846 * 3 2 1 36 36 H 0.97005 * 119.99952 * 0.02562 * 6 4 2 37 37 H 1.09009 * 117.50308 * 214.95500 * 9 7 6 38 38 H 1.09001 * 117.50466 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.58898 * 278.67174 * 11 10 7 40 40 H 1.09001 * 109.59107 * 39.10562 * 11 10 7 41 41 H 1.08998 * 109.58456 * 291.51162 * 12 11 10 42 42 H 1.08997 * 109.57901 * 171.10519 * 12 11 10 43 43 H 0.97002 * 120.00579 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.58317 * 297.10959 * 22 13 12 45 45 H 1.09001 * 109.58182 * 176.69901 * 22 13 12 46 46 H 1.08997 * 109.58513 * 320.89612 * 23 10 7 47 47 H 1.08998 * 109.59000 * 81.18876 * 23 10 7 48 48 H 1.08003 * 119.99930 * 359.97438 * 25 24 2 49 49 H 1.07999 * 119.99782 * 180.27407 * 26 25 24 50 50 H 1.08005 * 119.99689 * 179.84151 * 27 26 25 51 51 H 1.07998 * 120.00239 * 179.97438 * 28 27 26 52 52 H 1.07997 * 120.00847 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.6395 -1.7548 -1.1221 6 7 1.8071 -0.1853 -2.4510 7 6 2.2960 -0.8756 -3.6471 8 1 2.9655 -1.7161 -3.4642 9 6 1.3464 -0.9758 -4.8429 10 6 2.5481 -0.0314 -4.8956 11 6 3.7228 -0.4250 -5.7965 12 6 3.4920 0.1635 -7.1937 13 7 3.1994 1.5964 -7.0616 14 6 3.9685 2.5233 -7.7132 15 1 4.1568 3.4846 -7.2585 16 6 4.5062 2.2273 -8.9582 17 7 4.0288 1.2204 -9.6587 18 14 5.9071 3.2579 -9.6397 19 1 7.2043 2.6719 -9.2162 20 1 5.8327 3.2757 -11.1227 21 1 5.7983 4.6454 -9.1218 22 6 2.0729 2.0239 -6.2222 23 6 2.2751 1.4733 -4.8052 24 6 2.0323 -0.7103 1.2306 25 6 1.1391 -1.3339 2.0816 26 6 1.6003 -1.9892 3.2081 27 6 2.9537 -2.0132 3.4882 28 6 3.8464 -1.3852 2.6400 29 6 3.3856 -0.7335 1.5112 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.3218 0.6502 -2.5375 37 1 1.3916 -1.8820 -5.4471 38 1 0.3582 -0.5276 -4.7399 39 1 4.6499 -0.0293 -5.3819 40 1 3.7842 -1.5113 -5.8632 41 1 2.6488 -0.3393 -7.6672 42 1 4.3878 0.0279 -7.7997 43 1 4.4042 1.0136 -10.5289 44 1 1.1417 1.6363 -6.6354 45 1 2.0348 3.1128 -6.1889 46 1 1.3759 1.6466 -4.2142 47 1 3.1232 1.9710 -4.3350 48 1 0.0813 -1.3118 1.8648 49 1 0.9029 -2.4802 3.8706 50 1 3.3137 -2.5230 4.3697 51 1 4.9038 -1.4035 2.8591 52 1 4.0831 -0.2430 0.8484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016964606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:35 Heat of formation + Delta-G solvation = 27.079123 kcal Electronic energy + Delta-G solvation = -30188.954117 eV Core-core repulsion = 26347.163539 eV Total energy + Delta-G solvation = -3841.790579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.81528 -39.29356 -38.20758 -35.53687 -35.40790 -32.99697 -31.56440 -31.22139 -30.10556 -29.73054 -28.24052 -27.73854 -24.49376 -24.32985 -22.83671 -22.47914 -22.37573 -21.35515 -20.58631 -19.57979 -18.24394 -17.49503 -16.91400 -16.42388 -16.11048 -15.36081 -15.09432 -14.84350 -14.64004 -14.34531 -14.29110 -14.03719 -13.65039 -13.55150 -13.42886 -13.18882 -12.93146 -12.75361 -12.61114 -12.51014 -12.38911 -12.25732 -12.01200 -11.81175 -11.64840 -11.57863 -11.32575 -11.07516 -10.98079 -10.90716 -10.76760 -10.44312 -10.33127 -10.01533 -9.82691 -9.66870 -9.60715 -9.34124 -9.03524 -8.87169 -8.46749 -8.43637 -6.58269 -5.80356 -3.28657 1.18200 1.28185 2.57212 3.06763 3.36585 3.43855 3.44659 3.69499 4.17550 4.19103 4.44245 4.48444 4.60983 4.74156 4.83883 4.88129 4.96197 4.98870 5.13465 5.14014 5.21270 5.25895 5.37787 5.38201 5.40464 5.47923 5.49253 5.50603 5.63470 5.72715 5.81222 5.84130 5.88183 5.89848 6.06334 6.06735 6.10828 6.28488 6.31234 6.36712 6.42109 6.44927 6.58723 6.62336 6.63222 6.68531 6.83361 6.84795 6.96642 7.32718 7.51024 7.60869 7.80289 8.22074 8.48610 9.21333 9.83320 10.43469 11.27187 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.002228 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.983483 B =12565.166744 C =12787.164458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.141 4.141 4 C 0.525 3.475 5 O -0.532 6.532 6 N -0.693 5.693 7 C 0.069 3.931 8 H 0.131 0.869 9 C -0.183 4.183 10 C -0.096 4.096 11 C -0.105 4.105 12 C 0.177 3.823 13 N -0.588 5.588 14 C -0.259 4.259 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.150 3.850 23 C -0.096 4.096 24 C -0.056 4.056 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.092 4.092 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.020 0.980 42 H 0.080 0.920 43 H 0.254 0.746 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.044 0.956 47 H 0.063 0.937 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -3.363 23.808 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.046 4.046 3 C -0.198 4.198 4 C 0.310 3.690 5 O -0.408 6.408 6 N -0.343 5.343 7 C -0.036 4.036 8 H 0.148 0.852 9 C -0.221 4.221 10 C -0.097 4.097 11 C -0.145 4.145 12 C 0.051 3.949 13 N -0.310 5.310 14 C -0.389 4.389 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.541 5.541 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.023 3.977 23 C -0.136 4.136 24 C -0.056 4.056 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.110 4.110 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.143 0.857 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.072 -4.160 23.703 25.083 hybrid contribution 0.456 0.742 -0.552 1.032 sum -6.616 -3.418 23.152 24.320 Atomic orbital electron populations 1.21947 0.91982 1.02979 1.03117 1.19730 0.97348 0.96195 0.91292 1.21929 1.02100 0.92733 1.03066 1.20308 0.79353 0.85240 0.84061 1.90709 1.40537 1.23054 1.86457 1.45401 1.57622 1.26292 1.04955 1.21901 1.01728 0.99876 0.80106 0.85167 1.23537 0.95341 1.02395 1.00847 1.21950 0.97613 0.93587 0.96569 1.21873 0.95321 0.98770 0.98531 1.20665 1.00181 0.83442 0.90581 1.43902 1.30861 1.02073 1.54166 1.19120 1.24698 0.97564 0.97470 0.92074 1.25185 1.00203 0.98323 0.95425 1.70037 1.41023 1.31051 1.11978 0.86333 0.82660 0.80086 0.77910 1.21356 1.21746 1.20364 1.20848 0.90866 0.97197 0.88750 1.21623 0.99454 0.92515 0.99986 1.19267 0.93672 0.98238 0.94446 1.21114 0.99668 0.97763 0.94787 1.21082 0.95712 0.99773 0.97555 1.21130 0.93549 0.99769 0.99627 1.21107 0.99618 0.98137 0.94955 1.20938 0.94890 0.98616 0.96568 0.91592 0.90866 0.91556 0.91065 0.91592 0.91516 0.76484 0.88392 0.89103 0.92128 0.93049 0.96195 0.90169 0.93599 0.96340 0.92738 0.93758 0.91807 0.85729 0.86222 0.86328 0.86164 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 7.11 37.16 0.26 -0.82 16 2 C -0.04 -0.42 0.72 -156.81 -0.11 -0.53 16 3 C -0.14 -1.15 8.07 37.16 0.30 -0.85 16 4 C 0.52 6.89 6.35 -10.99 -0.07 6.82 16 5 O -0.53 -9.09 15.12 5.56 0.08 -9.01 16 6 N -0.69 -8.54 5.18 -53.89 -0.28 -8.81 16 7 C 0.07 1.01 6.13 -68.01 -0.42 0.59 16 8 H 0.13 2.10 7.40 -51.93 -0.38 1.71 16 9 C -0.18 -2.63 9.87 -26.75 -0.26 -2.89 16 10 C -0.10 -1.55 1.94 -154.45 -0.30 -1.85 16 11 C -0.11 -1.99 5.83 -26.45 -0.15 -2.14 16 12 C 0.18 4.14 5.37 -3.67 -0.02 4.12 16 13 N -0.59 -14.39 2.90 -172.25 -0.50 -14.89 16 14 C -0.26 -6.99 9.48 -15.06 -0.14 -7.14 16 15 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 16 C 0.01 0.23 4.87 -17.43 -0.08 0.14 16 17 N -0.90 -25.88 11.56 55.49 0.64 -25.24 16 18 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.15 3.03 6.52 -3.67 -0.02 3.01 16 23 C -0.10 -1.56 5.37 -26.45 -0.14 -1.70 16 24 C -0.06 -0.61 4.23 -104.62 -0.44 -1.05 16 25 C -0.12 -1.13 8.99 -39.58 -0.36 -1.48 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 28 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 29 C -0.09 -1.05 8.38 -39.58 -0.33 -1.38 16 30 H 0.07 0.44 7.99 -51.93 -0.42 0.02 16 31 H 0.07 0.44 7.77 -51.93 -0.40 0.04 16 32 H 0.07 0.54 7.26 -51.93 -0.38 0.16 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.59 7.09 -51.93 -0.37 0.22 16 35 H 0.07 0.48 7.26 -51.93 -0.38 0.10 16 36 H 0.40 4.11 6.04 -40.82 -0.25 3.86 16 37 H 0.10 1.40 8.14 -51.92 -0.42 0.98 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 2.10 6.31 -51.93 -0.33 1.77 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 46 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.12 0.98 5.91 -52.48 -0.31 0.67 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 50 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 52 H 0.12 1.34 7.24 -52.49 -0.38 0.96 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -31.86 405.45 -11.01 -42.88 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.55 Total: 4.32 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.49 Total: -11.81 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.14 Total: -48.95 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.86 -11.01 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.956 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds