Wall clock time and date at job start Wed Apr 1 2020 01:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46937 * 2 1 4 4 C 1.50691 * 109.47480 * 239.99625 * 2 1 3 5 5 O 1.21280 * 120.00129 * 245.86325 * 4 2 1 6 6 N 1.34780 * 120.00032 * 65.86394 * 4 2 1 7 7 C 1.46501 * 120.00192 * 179.97438 * 6 4 2 8 8 H 1.08998 * 115.55257 * 350.58073 * 7 6 4 9 9 C 1.53026 * 117.50188 * 136.27035 * 7 6 4 10 10 C 1.52813 * 117.50115 * 204.89927 * 7 6 4 11 11 C 1.53187 * 117.71390 * 144.89769 * 10 7 6 12 12 C 1.53353 * 108.77080 * 158.88478 * 11 10 7 13 13 N 1.46850 * 108.81353 * 51.30956 * 12 11 10 14 14 C 1.36936 * 120.38287 * 123.07657 * 13 12 11 15 15 H 1.07999 * 120.00447 * 214.07485 * 14 13 12 16 16 C 1.38811 * 120.00061 * 34.06825 * 14 13 12 17 17 N 1.31621 * 120.00024 * 16.72942 * 16 14 13 18 18 Si 1.86797 * 120.00291 * 196.72718 * 16 14 13 19 19 H 1.48505 * 109.47137 * 90.00159 * 18 16 14 20 20 H 1.48498 * 109.47401 * 209.99929 * 18 16 14 21 21 H 1.48496 * 109.47115 * 330.00727 * 18 16 14 22 22 C 1.46843 * 119.23288 * 303.09819 * 13 12 11 23 23 C 1.53185 * 117.71504 * 0.14185 * 10 7 6 24 24 C 1.50707 * 109.46794 * 119.99462 * 2 1 3 25 25 C 1.38232 * 119.99992 * 5.49559 * 24 2 1 26 26 C 1.38238 * 119.99839 * 179.78841 * 25 24 2 27 27 C 1.38233 * 119.99763 * 0.43687 * 26 25 24 28 28 C 1.38236 * 120.00490 * 359.81133 * 27 26 25 29 29 C 1.38229 * 119.99541 * 185.76279 * 24 2 1 30 30 H 1.09000 * 109.46923 * 60.00794 * 1 2 3 31 31 H 1.08997 * 109.47543 * 300.00325 * 1 2 3 32 32 H 1.09005 * 109.46838 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46871 * 59.99834 * 3 2 1 34 34 H 1.09000 * 109.46896 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46928 * 299.99846 * 3 2 1 36 36 H 0.97005 * 119.99952 * 0.02562 * 6 4 2 37 37 H 1.09009 * 117.50308 * 214.95500 * 9 7 6 38 38 H 1.09001 * 117.50466 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.58898 * 278.67174 * 11 10 7 40 40 H 1.09001 * 109.59107 * 39.10562 * 11 10 7 41 41 H 1.08998 * 109.58456 * 291.51162 * 12 11 10 42 42 H 1.08997 * 109.57901 * 171.10519 * 12 11 10 43 43 H 0.97002 * 120.00579 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.58317 * 297.10959 * 22 13 12 45 45 H 1.09001 * 109.58182 * 176.69901 * 22 13 12 46 46 H 1.08997 * 109.58513 * 320.89612 * 23 10 7 47 47 H 1.08998 * 109.59000 * 81.18876 * 23 10 7 48 48 H 1.08003 * 119.99930 * 359.97438 * 25 24 2 49 49 H 1.07999 * 119.99782 * 180.27407 * 26 25 24 50 50 H 1.08005 * 119.99689 * 179.84151 * 27 26 25 51 51 H 1.07998 * 120.00239 * 179.97438 * 28 27 26 52 52 H 1.07997 * 120.00847 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.6395 -1.7548 -1.1221 6 7 1.8071 -0.1853 -2.4510 7 6 2.2960 -0.8756 -3.6471 8 1 2.9655 -1.7161 -3.4642 9 6 1.3464 -0.9758 -4.8429 10 6 2.5481 -0.0314 -4.8956 11 6 3.7228 -0.4250 -5.7965 12 6 3.4920 0.1635 -7.1937 13 7 3.1994 1.5964 -7.0616 14 6 3.9685 2.5233 -7.7132 15 1 4.1568 3.4846 -7.2585 16 6 4.5062 2.2273 -8.9582 17 7 4.0288 1.2204 -9.6587 18 14 5.9071 3.2579 -9.6397 19 1 7.2043 2.6719 -9.2162 20 1 5.8327 3.2757 -11.1227 21 1 5.7983 4.6454 -9.1218 22 6 2.0729 2.0239 -6.2222 23 6 2.2751 1.4733 -4.8052 24 6 2.0323 -0.7103 1.2306 25 6 1.1391 -1.3339 2.0816 26 6 1.6003 -1.9892 3.2081 27 6 2.9537 -2.0132 3.4882 28 6 3.8464 -1.3852 2.6400 29 6 3.3856 -0.7335 1.5112 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.3218 0.6502 -2.5375 37 1 1.3916 -1.8820 -5.4471 38 1 0.3582 -0.5276 -4.7399 39 1 4.6499 -0.0293 -5.3819 40 1 3.7842 -1.5113 -5.8632 41 1 2.6488 -0.3393 -7.6672 42 1 4.3878 0.0279 -7.7997 43 1 4.4042 1.0136 -10.5289 44 1 1.1417 1.6363 -6.6354 45 1 2.0348 3.1128 -6.1889 46 1 1.3759 1.6466 -4.2142 47 1 3.1232 1.9710 -4.3350 48 1 0.0813 -1.3118 1.8648 49 1 0.9029 -2.4802 3.8706 50 1 3.3137 -2.5230 4.3697 51 1 4.9038 -1.4035 2.8591 52 1 4.0831 -0.2430 0.8484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016964606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:33 Heat of formation + Delta-G solvation = 10.504491 kcal Electronic energy + Delta-G solvation = -30189.672847 eV Core-core repulsion = 26347.163539 eV Total energy + Delta-G solvation = -3842.509309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74028 -40.39971 -39.30628 -37.10516 -36.29177 -34.38214 -33.25801 -31.92667 -31.69002 -30.55829 -29.84737 -28.33112 -26.23606 -25.29889 -24.07160 -23.72469 -23.13027 -22.81368 -21.87749 -20.50702 -19.80672 -18.53472 -18.06347 -17.70442 -17.25244 -16.76350 -16.18371 -15.94462 -15.76822 -15.54776 -15.35433 -15.13722 -14.99032 -14.93871 -14.69441 -14.34423 -14.15145 -13.80797 -13.71263 -13.41482 -13.25177 -13.23680 -13.08635 -13.00598 -12.88479 -12.64202 -12.61099 -12.52562 -12.42652 -12.27886 -12.00801 -11.82180 -11.75593 -11.61350 -11.36328 -11.26679 -10.86799 -10.62147 -10.50110 -9.76934 -9.64698 -9.60733 -8.56402 -7.86809 -5.38487 0.44953 0.54922 1.45494 1.47466 1.55773 1.56270 2.07806 2.50543 2.93501 2.95321 3.27932 3.45770 3.64012 3.73066 3.80646 3.87097 3.88795 3.99880 4.03152 4.13074 4.17769 4.21803 4.29544 4.52989 4.59828 4.60748 4.65996 4.72784 4.74830 4.81747 4.84046 4.84801 4.88488 4.91309 4.96260 5.04209 5.08023 5.12780 5.16750 5.17541 5.22777 5.25299 5.30878 5.38046 5.48894 5.55135 5.61307 5.65361 5.66851 5.71355 5.73478 6.14867 6.43257 6.53494 7.17049 7.23147 7.87664 8.41807 9.17707 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.002228 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.983483 B =12565.166744 C =12787.164458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 C -0.140 4.140 4 C 0.523 3.477 5 O -0.576 6.576 6 N -0.683 5.683 7 C 0.086 3.914 8 H 0.114 0.886 9 C -0.169 4.169 10 C -0.113 4.113 11 C -0.094 4.094 12 C 0.186 3.814 13 N -0.607 5.607 14 C -0.265 4.265 15 H 0.062 0.938 16 C -0.045 4.045 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.266 1.266 22 C 0.145 3.855 23 C -0.081 4.081 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.129 4.129 28 C -0.134 4.134 29 C -0.116 4.116 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.001 0.999 42 H 0.042 0.958 43 H 0.250 0.750 44 H 0.017 0.983 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.057 0.943 48 H 0.144 0.856 49 H 0.145 0.855 50 H 0.141 0.859 51 H 0.131 0.869 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 -2.626 26.261 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.197 4.197 4 C 0.311 3.689 5 O -0.455 6.455 6 N -0.333 5.333 7 C -0.021 4.021 8 H 0.132 0.868 9 C -0.207 4.207 10 C -0.115 4.115 11 C -0.133 4.133 12 C 0.060 3.940 13 N -0.330 5.330 14 C -0.396 4.396 15 H 0.080 0.920 16 C -0.242 4.242 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.191 1.191 22 C 0.020 3.980 23 C -0.120 4.120 24 C -0.072 4.072 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.152 4.152 29 C -0.134 4.134 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.162 0.838 49 H 0.162 0.838 50 H 0.159 0.841 51 H 0.149 0.851 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.883 -3.384 26.188 27.860 hybrid contribution 1.001 0.474 -1.266 1.683 sum -7.882 -2.910 24.922 26.300 Atomic orbital electron populations 1.21993 0.89864 1.03174 1.04865 1.19741 0.98868 0.96321 0.88938 1.21955 1.01318 0.91895 1.04546 1.20975 0.78295 0.84715 0.84941 1.90691 1.42506 1.25202 1.87080 1.45298 1.57292 1.26577 1.04132 1.21584 1.01374 0.98606 0.80513 0.86832 1.23618 0.95511 1.01625 0.99995 1.21796 0.97787 0.94161 0.97742 1.21624 0.96257 0.99162 0.96303 1.20419 0.97573 0.83480 0.92500 1.44167 1.32179 1.02015 1.54668 1.19431 1.24742 0.97937 0.97483 0.92023 1.25917 1.02558 0.99732 0.95963 1.70175 1.42432 1.32859 1.12175 0.85343 0.79629 0.79131 0.76799 1.21389 1.22124 1.19106 1.21013 0.89259 0.97493 0.90251 1.21441 1.01118 0.91904 0.97558 1.19488 0.93671 0.98880 0.95192 1.21418 1.00556 0.97394 0.94790 1.21463 0.96171 0.99281 0.97672 1.21456 0.93714 0.99421 1.00106 1.21354 1.00614 0.98286 0.94986 1.21038 0.95392 0.99725 0.97216 0.90192 0.88838 0.92127 0.89461 0.92966 0.90128 0.74929 0.88402 0.87024 0.93380 0.91763 0.98094 0.93941 0.94117 0.96515 0.92671 0.89619 0.92458 0.83831 0.83762 0.84145 0.85137 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.11 71.98 0.51 -1.16 16 2 C -0.04 -0.62 0.72 -53.67 -0.04 -0.66 16 3 C -0.14 -1.97 8.07 71.98 0.58 -1.39 16 4 C 0.52 13.00 6.35 87.65 0.56 13.55 16 5 O -0.58 -19.58 15.12 -3.03 -0.05 -19.63 16 6 N -0.68 -15.16 5.18 -442.79 -2.29 -17.46 16 7 C 0.09 2.34 6.13 44.94 0.28 2.62 16 8 H 0.11 3.59 7.40 -2.39 -0.02 3.57 16 9 C -0.17 -4.46 9.87 30.58 0.30 -4.16 16 10 C -0.11 -3.51 1.94 -52.14 -0.10 -3.61 16 11 C -0.09 -3.58 5.83 30.77 0.18 -3.40 16 12 C 0.19 8.96 5.37 86.43 0.46 9.43 16 13 N -0.61 -30.10 2.90 -698.87 -2.03 -32.13 16 14 C -0.27 -14.54 9.48 84.03 0.80 -13.75 16 15 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 16 C -0.05 -2.55 4.87 84.86 0.41 -2.13 16 17 N -0.93 -55.43 11.56 21.65 0.25 -55.18 16 18 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.15 5.72 6.52 86.44 0.56 6.28 16 23 C -0.08 -2.44 5.37 30.78 0.17 -2.28 16 24 C -0.07 -1.48 4.23 -19.87 -0.08 -1.56 16 25 C -0.12 -2.16 8.99 22.27 0.20 -1.96 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 28 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 29 C -0.12 -2.63 8.38 22.27 0.19 -2.44 16 30 H 0.08 0.72 7.99 -2.39 -0.02 0.70 16 31 H 0.09 0.75 7.77 -2.39 -0.02 0.73 16 32 H 0.06 0.80 7.26 -2.38 -0.02 0.78 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.88 7.09 -2.39 -0.02 0.86 16 35 H 0.08 0.89 7.26 -2.39 -0.02 0.87 16 36 H 0.41 6.93 6.04 -92.70 -0.56 6.37 16 37 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 38 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.04 2.33 6.31 -2.39 -0.02 2.32 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 2.13 7.92 -2.39 -0.02 2.11 16 46 H 0.09 1.87 6.75 -2.39 -0.02 1.86 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.14 1.84 5.91 -2.91 -0.02 1.82 16 49 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 51 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 52 H 0.11 2.53 7.24 -2.91 -0.02 2.51 16 Total: -1.00 -71.67 405.45 3.90 -67.77 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.35 Total: 22.51 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.64 Total: -12.85 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.07 Total: -104.77 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.67 3.90 -67.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.279 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds