Wall clock time and date at job start Wed Apr 1 2020 01:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 C 1.50698 * 109.47206 * 119.99832 * 2 1 3 5 5 O 1.21286 * 119.99572 * 125.67141 * 4 2 1 6 6 N 1.34777 * 120.00142 * 305.66949 * 4 2 1 7 7 C 1.46501 * 119.99779 * 180.02562 * 6 4 2 8 8 H 1.09001 * 115.55009 * 9.31193 * 7 6 4 9 9 C 1.53033 * 117.49792 * 223.58429 * 7 6 4 10 10 C 1.52819 * 117.50275 * 154.99989 * 7 6 4 11 11 C 1.53185 * 117.70895 * 359.86147 * 10 7 6 12 12 C 1.53347 * 108.76399 * 158.88338 * 11 10 7 13 13 N 1.46849 * 108.81765 * 51.30719 * 12 11 10 14 14 C 1.36936 * 120.38062 * 123.07410 * 13 12 11 15 15 H 1.08005 * 119.99884 * 212.28403 * 14 13 12 16 16 C 1.38816 * 120.00211 * 32.28035 * 14 13 12 17 17 N 1.31614 * 119.99636 * 15.32894 * 16 14 13 18 18 Si 1.86800 * 120.00006 * 195.32921 * 16 14 13 19 19 H 1.48494 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46871 * 120.00211 * 18 16 14 21 21 H 1.48499 * 109.46710 * 239.99931 * 18 16 14 22 22 C 1.46835 * 119.23573 * 303.10607 * 13 12 11 23 23 C 1.53182 * 117.71226 * 215.09874 * 10 7 6 24 24 C 1.50699 * 109.46866 * 240.00159 * 2 1 3 25 25 C 1.38242 * 119.99768 * 124.12534 * 24 2 1 26 26 C 1.38229 * 119.99634 * 179.78487 * 25 24 2 27 27 C 1.38234 * 120.00462 * 0.44666 * 26 25 24 28 28 C 1.38236 * 119.99656 * 359.80537 * 27 26 25 29 29 C 1.38228 * 120.00089 * 304.39938 * 24 2 1 30 30 H 1.08999 * 109.46582 * 299.99766 * 1 2 3 31 31 H 1.08994 * 109.47135 * 60.00086 * 1 2 3 32 32 H 1.08993 * 109.46707 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46822 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47276 * 299.99828 * 3 2 1 35 35 H 1.09000 * 109.47238 * 60.00236 * 3 2 1 36 36 H 0.96997 * 119.99787 * 359.97438 * 6 4 2 37 37 H 1.09007 * 117.50097 * 145.04564 * 9 7 6 38 38 H 1.08993 * 117.50688 * 359.97438 * 9 7 6 39 39 H 1.08994 * 109.59217 * 39.10001 * 11 10 7 40 40 H 1.08995 * 109.58574 * 278.66049 * 11 10 7 41 41 H 1.09007 * 109.58187 * 291.51360 * 12 11 10 42 42 H 1.09001 * 109.58492 * 171.11395 * 12 11 10 43 43 H 0.96997 * 120.00338 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.58472 * 176.69452 * 22 13 12 45 45 H 1.09002 * 109.58094 * 297.08993 * 22 13 12 46 46 H 1.09005 * 109.58595 * 81.33013 * 23 10 7 47 47 H 1.08999 * 109.58817 * 320.89804 * 23 10 7 48 48 H 1.07999 * 119.99878 * 0.02562 * 25 24 2 49 49 H 1.08008 * 119.99897 * 180.27629 * 26 25 24 50 50 H 1.07999 * 120.00633 * 179.83815 * 27 26 25 51 51 H 1.08003 * 120.00535 * 180.02562 * 28 27 26 52 52 H 1.08003 * 120.00004 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.8120 -1.6331 1.1221 6 7 1.6154 -0.3203 2.4513 7 6 2.1042 -1.0105 3.6474 8 1 2.9166 -1.7184 3.4828 9 6 1.0827 -1.3470 4.7361 10 6 2.1028 -0.2313 4.9620 11 6 1.5943 1.2134 4.9331 12 6 1.1802 1.6191 6.3528 13 7 2.2833 1.3150 7.2731 14 6 2.8286 2.3016 8.0506 15 1 3.8772 2.2693 8.3073 16 6 2.0336 3.3432 8.5089 17 7 0.7223 3.2398 8.4624 18 14 2.8249 4.8915 9.1914 19 1 4.3027 4.7585 9.1346 20 1 2.4011 6.0621 8.3818 21 1 2.3996 5.0845 10.6011 22 6 2.7955 -0.0590 7.3495 23 6 3.2424 -0.4990 5.9500 24 6 2.0323 -0.7104 -1.2305 25 6 2.8959 -0.0659 -2.0965 26 6 3.3601 -0.7191 -3.2228 27 6 2.9536 -2.0134 -3.4882 28 6 2.0859 -2.6560 -2.6249 29 6 1.6251 -2.0043 -1.4962 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 0.9922 0.4180 2.5379 37 1 1.2230 -2.2765 5.2880 38 1 0.0472 -1.0544 4.5626 39 1 0.7344 1.2850 4.2672 40 1 2.3875 1.8730 4.5814 41 1 0.2929 1.0592 6.6486 42 1 0.9660 2.6875 6.3796 43 1 0.1667 3.9674 8.7829 44 1 3.6444 -0.0951 8.0321 45 1 2.0084 -0.7229 7.7071 46 1 4.1244 0.0684 5.6529 47 1 3.4759 -1.5636 5.9588 48 1 3.2110 0.9464 -1.8910 49 1 4.0384 -0.2172 -3.8971 50 1 3.3142 -2.5228 -4.3695 51 1 1.7685 -3.6673 -2.8319 52 1 0.9472 -2.5063 -0.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016964607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:38 Heat of formation + Delta-G solvation = 27.497780 kcal Electronic energy + Delta-G solvation = -30246.508840 eV Core-core repulsion = 26404.736416 eV Total energy + Delta-G solvation = -3841.772424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.79471 -39.28356 -38.19910 -35.52978 -35.39418 -33.03085 -31.46060 -31.20515 -30.13135 -29.77065 -28.20340 -27.70260 -24.48350 -24.32662 -22.82901 -22.47068 -22.35677 -21.35791 -20.56491 -19.54877 -18.24408 -17.47925 -16.87320 -16.49464 -16.02603 -15.34998 -15.05316 -14.87368 -14.60818 -14.32725 -14.31004 -14.04956 -13.64846 -13.58989 -13.40268 -13.03940 -13.02580 -12.66487 -12.57321 -12.50112 -12.36525 -12.26143 -11.97837 -11.78100 -11.69977 -11.50421 -11.35389 -11.05848 -10.97543 -10.89893 -10.76460 -10.49864 -10.28374 -10.01662 -9.75885 -9.69252 -9.58243 -9.35068 -9.02255 -8.86058 -8.49041 -8.42654 -6.60377 -5.80908 -3.27561 1.19455 1.29348 2.59088 3.09197 3.34668 3.43052 3.45453 3.70677 4.17859 4.22064 4.47802 4.47955 4.64201 4.77031 4.84949 4.90631 4.96754 5.00035 5.14357 5.14638 5.25933 5.27700 5.38435 5.39593 5.45621 5.50560 5.51627 5.53632 5.63098 5.77361 5.82279 5.87265 5.89335 5.91782 6.04913 6.10297 6.12654 6.27946 6.32762 6.37295 6.43680 6.46399 6.56379 6.59458 6.65179 6.70571 6.83504 6.85710 7.00095 7.31093 7.53760 7.61189 7.79250 8.23952 8.47122 9.21002 9.83293 10.42032 11.26891 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002333 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.614745 B =12000.698334 C =12513.666969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.525 3.475 5 O -0.534 6.534 6 N -0.692 5.692 7 C 0.069 3.931 8 H 0.130 0.870 9 C -0.183 4.183 10 C -0.097 4.097 11 C -0.104 4.104 12 C 0.176 3.824 13 N -0.589 5.589 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.149 3.851 23 C -0.098 4.098 24 C -0.056 4.056 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.092 4.092 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.401 0.599 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.085 0.915 43 H 0.253 0.747 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.126 0.874 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 -7.649 -21.828 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 C -0.202 4.202 4 C 0.311 3.689 5 O -0.410 6.410 6 N -0.342 5.342 7 C -0.036 4.036 8 H 0.148 0.852 9 C -0.221 4.221 10 C -0.098 4.098 11 C -0.143 4.143 12 C 0.050 3.950 13 N -0.311 5.311 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.194 4.194 17 N -0.545 5.545 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.023 3.977 23 C -0.137 4.137 24 C -0.056 4.056 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.139 4.139 29 C -0.110 4.110 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.144 0.856 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.461 -8.190 -21.834 23.324 hybrid contribution -0.047 1.087 0.465 1.183 sum -0.507 -7.103 -21.370 22.525 Atomic orbital electron populations 1.21919 0.91687 1.03021 1.03130 1.19729 0.97308 0.96285 0.91241 1.21965 1.02087 0.92881 1.03274 1.20305 0.80966 0.83541 0.84083 1.90702 1.34444 1.29319 1.86495 1.45399 1.47748 1.36195 1.04857 1.21871 1.00444 1.00592 0.80709 0.85237 1.23522 0.96099 1.00509 1.01980 1.21941 0.98782 0.94014 0.95068 1.21804 0.98798 0.92488 1.01240 1.20697 0.89060 1.01110 0.84139 1.43932 1.39765 1.03209 1.44228 1.19209 0.92310 1.01569 1.25229 0.91908 1.25145 0.95220 1.00364 0.98698 1.70021 1.02730 1.31798 1.49989 0.86252 0.78910 0.83442 0.78350 1.20207 1.21560 1.21689 1.20864 0.96801 0.87384 0.92673 1.21688 0.95974 0.99225 0.96845 1.19279 0.97498 0.94411 0.94415 1.21144 0.97160 1.00342 0.94632 1.21091 1.00201 0.95191 0.97601 1.21124 0.98178 0.95224 0.99577 1.21090 0.98167 0.99744 0.94931 1.20905 0.99474 0.94002 0.96581 0.91540 0.91030 0.91752 0.91477 0.90880 0.91338 0.76325 0.88534 0.88971 0.93890 0.92085 0.96351 0.89656 0.93700 0.92674 0.96274 0.91882 0.92905 0.85626 0.86192 0.86345 0.86235 0.86504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.08 37.16 0.30 -0.85 16 2 C -0.04 -0.44 0.72 -156.81 -0.11 -0.55 16 3 C -0.14 -1.27 7.10 37.16 0.26 -1.01 16 4 C 0.53 7.06 6.34 -10.99 -0.07 6.99 16 5 O -0.53 -9.15 15.06 5.55 0.08 -9.06 16 6 N -0.69 -8.87 5.18 -53.88 -0.28 -9.14 16 7 C 0.07 1.01 6.14 -68.01 -0.42 0.59 16 8 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 9 C -0.18 -2.62 9.86 -26.79 -0.26 -2.88 16 10 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 11 C -0.10 -1.85 5.37 -26.46 -0.14 -1.99 16 12 C 0.18 4.02 5.36 -3.67 -0.02 4.00 16 13 N -0.59 -14.43 2.92 -172.26 -0.50 -14.93 16 14 C -0.25 -6.84 9.52 -15.06 -0.14 -6.99 16 15 H 0.06 1.69 7.88 -52.48 -0.41 1.27 16 16 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 17 N -0.90 -25.67 11.32 55.49 0.63 -25.05 16 18 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.15 3.09 6.51 -3.68 -0.02 3.07 16 23 C -0.10 -1.69 5.83 -26.46 -0.15 -1.85 16 24 C -0.06 -0.62 4.26 -104.62 -0.45 -1.07 16 25 C -0.11 -1.17 8.98 -39.58 -0.36 -1.53 16 26 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 28 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 29 C -0.09 -1.03 8.30 -39.58 -0.33 -1.36 16 30 H 0.07 0.49 7.27 -51.93 -0.38 0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.54 7.16 -51.93 -0.37 0.17 16 33 H 0.07 0.64 7.32 -51.92 -0.38 0.26 16 34 H 0.07 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 36 H 0.40 4.49 6.04 -40.82 -0.25 4.25 16 37 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.65 6.75 -51.93 -0.35 0.30 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.09 2.19 6.12 -51.93 -0.32 1.87 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 48 H 0.13 1.08 5.90 -52.49 -0.31 0.77 16 49 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 50 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 51 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 52 H 0.12 1.28 7.32 -52.48 -0.38 0.89 16 LS Contribution 405.10 15.07 6.10 6.10 Total: -1.00 -31.56 405.10 -11.03 -42.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.54 Total: 5.09 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.49 Total: -11.95 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.15 Total: -49.12 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.56 -11.03 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.088 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds