Wall clock time and date at job start Wed Apr 1 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46662 * 2 1 4 4 C 1.50698 * 109.47206 * 119.99832 * 2 1 3 5 5 O 1.21286 * 119.99572 * 125.67141 * 4 2 1 6 6 N 1.34777 * 120.00142 * 305.66949 * 4 2 1 7 7 C 1.46501 * 119.99779 * 180.02562 * 6 4 2 8 8 H 1.09001 * 115.55009 * 9.31193 * 7 6 4 9 9 C 1.53033 * 117.49792 * 223.58429 * 7 6 4 10 10 C 1.52819 * 117.50275 * 154.99989 * 7 6 4 11 11 C 1.53185 * 117.70895 * 359.86147 * 10 7 6 12 12 C 1.53347 * 108.76399 * 158.88338 * 11 10 7 13 13 N 1.46849 * 108.81765 * 51.30719 * 12 11 10 14 14 C 1.36936 * 120.38062 * 123.07410 * 13 12 11 15 15 H 1.08005 * 119.99884 * 212.28403 * 14 13 12 16 16 C 1.38816 * 120.00211 * 32.28035 * 14 13 12 17 17 N 1.31614 * 119.99636 * 15.32894 * 16 14 13 18 18 Si 1.86800 * 120.00006 * 195.32921 * 16 14 13 19 19 H 1.48494 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46871 * 120.00211 * 18 16 14 21 21 H 1.48499 * 109.46710 * 239.99931 * 18 16 14 22 22 C 1.46835 * 119.23573 * 303.10607 * 13 12 11 23 23 C 1.53182 * 117.71226 * 215.09874 * 10 7 6 24 24 C 1.50699 * 109.46866 * 240.00159 * 2 1 3 25 25 C 1.38242 * 119.99768 * 124.12534 * 24 2 1 26 26 C 1.38229 * 119.99634 * 179.78487 * 25 24 2 27 27 C 1.38234 * 120.00462 * 0.44666 * 26 25 24 28 28 C 1.38236 * 119.99656 * 359.80537 * 27 26 25 29 29 C 1.38228 * 120.00089 * 304.39938 * 24 2 1 30 30 H 1.08999 * 109.46582 * 299.99766 * 1 2 3 31 31 H 1.08994 * 109.47135 * 60.00086 * 1 2 3 32 32 H 1.08993 * 109.46707 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46822 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47276 * 299.99828 * 3 2 1 35 35 H 1.09000 * 109.47238 * 60.00236 * 3 2 1 36 36 H 0.96997 * 119.99787 * 359.97438 * 6 4 2 37 37 H 1.09007 * 117.50097 * 145.04564 * 9 7 6 38 38 H 1.08993 * 117.50688 * 359.97438 * 9 7 6 39 39 H 1.08994 * 109.59217 * 39.10001 * 11 10 7 40 40 H 1.08995 * 109.58574 * 278.66049 * 11 10 7 41 41 H 1.09007 * 109.58187 * 291.51360 * 12 11 10 42 42 H 1.09001 * 109.58492 * 171.11395 * 12 11 10 43 43 H 0.96997 * 120.00338 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.58472 * 176.69452 * 22 13 12 45 45 H 1.09002 * 109.58094 * 297.08993 * 22 13 12 46 46 H 1.09005 * 109.58595 * 81.33013 * 23 10 7 47 47 H 1.08999 * 109.58817 * 320.89804 * 23 10 7 48 48 H 1.07999 * 119.99878 * 0.02562 * 25 24 2 49 49 H 1.08008 * 119.99897 * 180.27629 * 26 25 24 50 50 H 1.07999 * 120.00633 * 179.83815 * 27 26 25 51 51 H 1.08003 * 120.00535 * 180.02562 * 28 27 26 52 52 H 1.08003 * 120.00004 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.8120 -1.6331 1.1221 6 7 1.6154 -0.3203 2.4513 7 6 2.1042 -1.0105 3.6474 8 1 2.9166 -1.7184 3.4828 9 6 1.0827 -1.3470 4.7361 10 6 2.1028 -0.2313 4.9620 11 6 1.5943 1.2134 4.9331 12 6 1.1802 1.6191 6.3528 13 7 2.2833 1.3150 7.2731 14 6 2.8286 2.3016 8.0506 15 1 3.8772 2.2693 8.3073 16 6 2.0336 3.3432 8.5089 17 7 0.7223 3.2398 8.4624 18 14 2.8249 4.8915 9.1914 19 1 4.3027 4.7585 9.1346 20 1 2.4011 6.0621 8.3818 21 1 2.3996 5.0845 10.6011 22 6 2.7955 -0.0590 7.3495 23 6 3.2424 -0.4990 5.9500 24 6 2.0323 -0.7104 -1.2305 25 6 2.8959 -0.0659 -2.0965 26 6 3.3601 -0.7191 -3.2228 27 6 2.9536 -2.0134 -3.4882 28 6 2.0859 -2.6560 -2.6249 29 6 1.6251 -2.0043 -1.4962 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 0.9922 0.4180 2.5379 37 1 1.2230 -2.2765 5.2880 38 1 0.0472 -1.0544 4.5626 39 1 0.7344 1.2850 4.2672 40 1 2.3875 1.8730 4.5814 41 1 0.2929 1.0592 6.6486 42 1 0.9660 2.6875 6.3796 43 1 0.1667 3.9674 8.7829 44 1 3.6444 -0.0951 8.0321 45 1 2.0084 -0.7229 7.7071 46 1 4.1244 0.0684 5.6529 47 1 3.4759 -1.5636 5.9588 48 1 3.2110 0.9464 -1.8910 49 1 4.0384 -0.2172 -3.8971 50 1 3.3142 -2.5228 -4.3695 51 1 1.7685 -3.6673 -2.8319 52 1 0.9472 -2.5063 -0.8217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016964607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:37 Heat of formation + Delta-G solvation = 11.513211 kcal Electronic energy + Delta-G solvation = -30247.201983 eV Core-core repulsion = 26404.736416 eV Total energy + Delta-G solvation = -3842.465567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.74512 -40.39941 -39.30568 -37.10806 -36.29754 -34.43849 -33.14181 -31.92386 -31.75347 -30.57325 -29.81157 -28.35760 -26.23849 -25.30918 -24.06483 -23.71585 -23.13509 -22.82098 -21.84158 -20.50766 -19.81005 -18.55270 -18.04707 -17.73959 -17.16651 -16.81691 -16.21649 -15.90656 -15.76201 -15.51436 -15.39856 -15.20186 -14.98259 -14.92208 -14.62935 -14.32974 -14.18837 -13.76100 -13.71240 -13.40691 -13.32494 -13.23303 -13.04051 -13.03313 -12.90278 -12.66091 -12.62360 -12.53411 -12.42028 -12.29715 -11.96667 -11.80581 -11.76374 -11.62790 -11.35523 -11.25275 -10.84854 -10.64169 -10.49500 -9.76605 -9.64884 -9.60751 -8.57000 -7.86065 -5.36110 0.45050 0.55241 1.45427 1.47885 1.54994 1.58085 2.08178 2.51286 2.93837 2.95473 3.29081 3.44965 3.64871 3.70046 3.82611 3.86385 3.89207 3.98934 4.02511 4.13547 4.18124 4.21144 4.29729 4.53162 4.59276 4.61394 4.65042 4.71455 4.73107 4.79393 4.83400 4.85597 4.86820 4.90116 4.96149 5.01286 5.09235 5.11566 5.17807 5.20786 5.22035 5.22818 5.30714 5.37566 5.50705 5.54319 5.61450 5.65391 5.66932 5.71346 5.78443 6.14842 6.43524 6.51516 7.18145 7.20749 7.88602 8.41312 9.18787 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002333 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.614745 B =12000.698334 C =12513.666969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.036 4.036 3 C -0.144 4.144 4 C 0.525 3.475 5 O -0.573 6.573 6 N -0.686 5.686 7 C 0.085 3.915 8 H 0.121 0.879 9 C -0.170 4.170 10 C -0.115 4.115 11 C -0.087 4.087 12 C 0.183 3.817 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.059 0.941 16 C -0.045 4.045 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.288 1.288 21 H -0.292 1.292 22 C 0.147 3.853 23 C -0.087 4.087 24 C -0.072 4.072 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.129 4.129 28 C -0.132 4.132 29 C -0.111 4.111 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.000 1.000 42 H 0.052 0.948 43 H 0.250 0.750 44 H 0.050 0.950 45 H 0.017 0.983 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.139 0.861 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.134 0.866 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -7.713 -23.726 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 C -0.201 4.201 4 C 0.312 3.688 5 O -0.452 6.452 6 N -0.336 5.336 7 C -0.021 4.021 8 H 0.139 0.861 9 C -0.208 4.208 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.057 3.943 13 N -0.331 5.331 14 C -0.394 4.394 15 H 0.077 0.923 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.194 1.194 20 H -0.214 1.214 21 H -0.219 1.219 22 C 0.021 3.979 23 C -0.126 4.126 24 C -0.073 4.073 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.150 4.150 29 C -0.130 4.130 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.248 0.752 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.018 0.982 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.157 0.843 49 H 0.160 0.840 50 H 0.159 0.841 51 H 0.152 0.848 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.300 -8.258 -23.744 25.141 hybrid contribution -0.073 1.030 1.045 1.470 sum -0.373 -7.227 -22.699 23.824 Atomic orbital electron populations 1.21940 0.90087 1.03145 1.04387 1.19729 0.98502 0.96471 0.89225 1.21997 1.01505 0.92032 1.04595 1.20911 0.80057 0.82963 0.84864 1.90681 1.36282 1.31173 1.87065 1.45357 1.47630 1.36262 1.04348 1.21651 1.00353 0.99442 0.80633 0.86089 1.23603 0.96179 0.99851 1.01163 1.21798 0.99671 0.93612 0.96553 1.21529 0.99528 0.93392 0.98187 1.20509 0.88241 0.98782 0.86780 1.44202 1.40053 1.04318 1.44571 1.19470 0.92338 1.02491 1.25128 0.92301 1.25844 0.95683 1.03045 0.99563 1.70157 1.03841 1.32430 1.51232 0.85271 0.78365 0.79908 0.77284 1.19385 1.21410 1.21909 1.20970 0.96379 0.85607 0.94947 1.21518 0.95892 1.00488 0.94716 1.19465 0.98136 0.94663 0.94986 1.21406 0.97041 1.01151 0.94893 1.21445 1.00189 0.95394 0.97664 1.21461 0.97660 0.95393 1.00127 1.21368 0.98314 1.00576 0.94776 1.21028 1.00177 0.94506 0.97246 0.90464 0.89578 0.92238 0.92451 0.88812 0.90798 0.75217 0.87456 0.88026 0.91013 0.93087 0.98221 0.92996 0.94046 0.93107 0.96522 0.92874 0.90315 0.84334 0.83982 0.84062 0.84767 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.08 71.98 0.58 -1.42 16 2 C -0.04 -0.69 0.72 -53.67 -0.04 -0.73 16 3 C -0.14 -2.24 7.10 71.98 0.51 -1.73 16 4 C 0.52 13.49 6.34 87.66 0.56 14.05 16 5 O -0.57 -19.39 15.06 -3.05 -0.05 -19.44 16 6 N -0.69 -16.33 5.18 -442.76 -2.29 -18.62 16 7 C 0.09 2.33 6.14 44.94 0.28 2.61 16 8 H 0.12 3.63 7.40 -2.39 -0.02 3.61 16 9 C -0.17 -4.48 9.86 30.56 0.30 -4.18 16 10 C -0.11 -3.56 1.94 -52.17 -0.10 -3.67 16 11 C -0.09 -3.03 5.37 30.77 0.17 -2.86 16 12 C 0.18 8.45 5.36 86.43 0.46 8.92 16 13 N -0.61 -30.22 2.92 -698.90 -2.04 -32.26 16 14 C -0.26 -14.47 9.52 84.03 0.80 -13.67 16 15 H 0.06 3.20 7.88 -2.91 -0.02 3.18 16 16 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 17 N -0.93 -54.21 11.32 21.65 0.25 -53.96 16 18 Si 0.96 44.48 29.58 68.60 2.03 46.51 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 C 0.15 6.06 6.51 86.43 0.56 6.63 16 23 C -0.09 -2.92 5.83 30.77 0.18 -2.74 16 24 C -0.07 -1.53 4.26 -19.87 -0.08 -1.61 16 25 C -0.13 -2.40 8.98 22.27 0.20 -2.20 16 26 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 27 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 28 C -0.13 -2.52 10.05 22.27 0.22 -2.29 16 29 C -0.11 -2.45 8.30 22.27 0.18 -2.26 16 30 H 0.08 0.93 7.27 -2.39 -0.02 0.92 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.92 7.16 -2.39 -0.02 0.90 16 33 H 0.06 1.01 7.32 -2.38 -0.02 0.99 16 34 H 0.09 1.07 7.71 -2.39 -0.02 1.05 16 35 H 0.07 1.06 7.98 -2.39 -0.02 1.04 16 36 H 0.41 8.20 6.04 -92.71 -0.56 7.64 16 37 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.07 2.04 6.75 -2.39 -0.02 2.03 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 42 H 0.05 2.73 6.12 -2.39 -0.01 2.72 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 48 H 0.14 2.12 5.90 -2.91 -0.02 2.11 16 49 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 50 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 51 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 52 H 0.11 2.44 7.32 -2.91 -0.02 2.42 16 Total: -1.00 -69.39 405.10 3.89 -65.50 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.35 Total: 25.42 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.65 Total: -13.14 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -4.09 Total: -104.84 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -69.39 3.89 -65.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016964607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.013 kcal (2) G-P(sol) polarization free energy of solvation -69.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds