Wall clock time and date at job start Wed Apr 1 2020 01:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.50695 * 109.46896 * 119.99894 * 2 1 3 5 5 O 1.21284 * 120.00270 * 241.27367 * 4 2 1 6 6 N 1.34778 * 120.00054 * 61.27392 * 4 2 1 7 7 C 1.49213 * 126.05942 * 355.48705 * 6 4 2 8 8 C 1.50350 * 104.86019 * 172.91471 * 7 6 4 9 9 H 1.09003 * 110.05220 * 278.93598 * 8 7 6 10 10 C 1.51210 * 125.53250 * 144.31536 * 8 7 6 11 11 C 1.56405 * 101.49831 * 203.97827 * 10 8 7 12 12 C 1.55943 * 105.85732 * 25.03445 * 11 10 8 13 13 H 1.09003 * 110.49054 * 248.83444 * 12 11 10 14 14 N 1.46496 * 110.49353 * 126.30490 * 12 11 10 15 15 C 1.36941 * 119.99798 * 86.45546 * 14 12 11 16 16 H 1.07998 * 120.00078 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00054 * 179.97438 * 15 14 12 18 18 N 1.31612 * 119.99982 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99726 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47347 * 90.00058 * 19 17 15 21 21 H 1.48501 * 109.47270 * 210.00076 * 19 17 15 22 22 H 1.48498 * 109.47239 * 329.99778 * 19 17 15 23 23 C 1.50295 * 104.15655 * 7.50079 * 12 11 10 24 24 H 1.09002 * 109.99157 * 79.58821 * 23 12 11 25 25 C 1.49697 * 126.05966 * 175.45723 * 6 4 2 26 26 C 1.50701 * 109.47342 * 239.99802 * 2 1 3 27 27 C 1.38222 * 120.00129 * 232.56704 * 26 2 1 28 28 C 1.38237 * 119.99902 * 179.81282 * 27 26 2 29 29 C 1.38228 * 120.00157 * 0.39466 * 28 27 26 30 30 C 1.38244 * 119.99983 * 359.85788 * 29 28 27 31 31 C 1.38235 * 119.99524 * 52.84272 * 26 2 1 32 32 H 1.09001 * 109.47555 * 291.04870 * 1 2 3 33 33 H 1.09009 * 109.47211 * 51.05246 * 1 2 3 34 34 H 1.09006 * 109.46869 * 171.04967 * 1 2 3 35 35 H 1.09000 * 109.46986 * 185.73780 * 3 2 1 36 36 H 1.08997 * 109.47262 * 305.74180 * 3 2 1 37 37 H 1.09004 * 109.46941 * 65.73973 * 3 2 1 38 38 H 1.09005 * 110.35947 * 291.75594 * 7 6 4 39 39 H 1.09002 * 110.36094 * 53.95588 * 7 6 4 40 40 H 1.09001 * 111.06174 * 85.92705 * 10 8 7 41 41 H 1.09002 * 111.02538 * 322.01462 * 10 8 7 42 42 H 1.09004 * 110.18288 * 265.90938 * 11 10 8 43 43 H 1.09000 * 110.18242 * 144.15037 * 11 10 8 44 44 H 0.96994 * 120.00336 * 266.45423 * 14 12 11 45 45 H 0.97005 * 120.00177 * 179.97438 * 18 17 15 46 46 H 1.09004 * 110.84374 * 36.69501 * 25 6 4 47 47 H 1.08996 * 111.02160 * 273.16414 * 25 6 4 48 48 H 1.07999 * 120.00139 * 359.97438 * 27 26 2 49 49 H 1.08006 * 120.00167 * 180.22948 * 28 27 26 50 50 H 1.08004 * 120.00280 * 179.83612 * 29 28 27 51 51 H 1.07996 * 119.99791 * 179.97438 * 30 29 28 52 52 H 1.07999 * 120.00376 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7103 -0.1145 2.0404 6 7 1.7280 -2.0080 1.4309 7 6 0.8316 -2.8418 0.5778 8 6 0.9685 -4.2364 1.1227 9 1 1.8721 -4.7036 0.7312 10 6 -0.1411 -5.2603 1.2054 11 6 0.3716 -6.1831 2.3595 12 6 1.3169 -5.2959 3.2263 13 1 2.3504 -5.6270 3.1244 14 7 0.9052 -5.3290 4.6318 15 6 1.3632 -6.3219 5.4562 16 1 2.0276 -7.0808 5.0701 17 6 0.9736 -6.3530 6.7882 18 7 1.4134 -7.3075 7.5804 19 14 -0.1749 -5.0399 7.4562 20 1 -1.5826 -5.4834 7.2920 21 1 0.1098 -4.8195 8.8969 22 1 0.0350 -3.7729 6.7108 23 6 1.1483 -3.9148 2.6580 24 1 0.2313 -3.4647 3.0384 25 6 2.2298 -2.8683 2.5484 26 6 2.0324 -0.7104 -1.2304 27 6 2.9488 -1.7381 -1.1094 28 6 3.4066 -2.3924 -2.2378 29 6 2.9543 -2.0134 -3.4878 30 6 2.0417 -0.9821 -3.6092 31 6 1.5810 -0.3305 -2.4805 32 1 -0.3634 0.3691 0.9591 33 1 -0.3634 0.6460 -0.7993 34 1 -0.3633 -1.0152 -0.1599 35 1 3.1251 1.4442 -0.1027 36 1 1.5951 1.9852 -0.8341 37 1 1.7629 1.9258 0.9369 38 1 -0.1999 -2.5003 0.6645 39 1 1.1563 -2.8055 -0.4621 40 1 -0.2317 -5.8160 0.2720 41 1 -1.0878 -4.7905 1.4722 42 1 0.9222 -7.0292 1.9482 43 1 -0.4671 -6.5364 2.9593 44 1 0.3083 -4.6476 4.9785 45 1 1.1414 -7.3291 8.5113 46 1 2.3105 -2.2957 3.4725 47 1 3.1861 -3.3241 2.2919 48 1 3.3051 -2.0317 -0.1330 49 1 4.1199 -3.1979 -2.1429 50 1 3.3140 -2.5228 -4.3696 51 1 1.6887 -0.6858 -4.5859 52 1 0.8681 0.4752 -2.5754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:28 Heat of formation + Delta-G solvation = 27.347263 kcal Electronic energy + Delta-G solvation = -31296.991564 eV Core-core repulsion = 27455.212613 eV Total energy + Delta-G solvation = -3841.778951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35329 -39.73269 -38.54537 -35.52491 -35.35182 -33.46544 -31.30110 -31.18352 -30.06982 -29.70723 -28.79431 -27.45993 -25.71888 -24.59479 -23.12201 -22.78935 -22.49387 -21.08690 -20.36385 -19.33303 -18.84412 -17.85450 -17.33102 -16.63777 -16.36613 -15.46512 -15.29858 -15.17201 -14.76418 -14.52982 -14.32224 -14.18016 -13.88279 -13.85928 -13.56249 -13.25341 -13.00959 -12.85982 -12.64683 -12.51235 -12.40268 -12.28161 -12.08336 -11.93956 -11.91052 -11.56654 -11.44560 -11.31806 -11.09936 -10.97023 -10.84418 -10.79528 -10.48291 -10.41372 -10.04646 -9.89591 -9.67579 -9.57668 -9.15706 -8.96501 -8.94247 -8.64952 -7.29356 -5.78761 -3.14663 1.05079 1.12781 2.55521 2.79180 3.36855 3.40172 3.45155 3.49106 3.97645 4.24892 4.27486 4.57809 4.65981 4.72184 4.72970 4.76814 4.81342 4.87160 5.01715 5.13501 5.19903 5.24053 5.27261 5.33515 5.38532 5.44713 5.49244 5.49814 5.54913 5.56855 5.62199 5.69784 5.72149 5.76126 5.79203 5.83170 5.89756 5.96026 6.01524 6.02588 6.10839 6.17078 6.20667 6.24508 6.26523 6.30268 6.35413 6.52512 6.69273 6.70409 6.93039 7.45831 7.97362 8.09291 8.40530 9.18390 9.91088 10.10224 11.39518 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.003059 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.943732 B = 9150.539185 C = 9956.152872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.123 4.123 4 C 0.540 3.460 5 O -0.537 6.537 6 N -0.621 5.621 7 C 0.111 3.889 8 C -0.127 4.127 9 H 0.083 0.917 10 C -0.098 4.098 11 C -0.142 4.142 12 C 0.202 3.798 13 H 0.062 0.938 14 N -0.745 5.745 15 C -0.244 4.244 16 H 0.091 0.909 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.122 4.122 24 H 0.078 0.922 25 C 0.127 3.873 26 C -0.072 4.072 27 C -0.114 4.114 28 C -0.116 4.116 29 C -0.121 4.121 30 C -0.120 4.120 31 C -0.109 4.109 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.127 0.873 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 13.752 -25.526 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.181 4.181 4 C 0.328 3.672 5 O -0.414 6.414 6 N -0.356 5.356 7 C -0.010 4.010 8 C -0.146 4.146 9 H 0.101 0.899 10 C -0.136 4.136 11 C -0.183 4.183 12 C 0.092 3.908 13 H 0.080 0.920 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.713 3.287 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.142 4.142 24 H 0.097 0.903 25 C 0.006 3.994 26 C -0.072 4.072 27 C -0.132 4.132 28 C -0.134 4.134 29 C -0.139 4.139 30 C -0.138 4.138 31 C -0.127 4.127 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.145 0.855 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.329 13.972 -24.959 28.635 hybrid contribution -0.856 0.746 0.608 1.289 sum -2.185 14.719 -24.351 28.537 Atomic orbital electron populations 1.22063 0.91821 1.03523 1.02989 1.19749 0.97383 0.96454 0.90492 1.21680 1.01804 0.92115 1.02473 1.19992 0.79899 0.80289 0.87001 1.90718 1.39316 1.65050 1.46297 1.49863 1.47842 1.09563 1.28338 1.21633 0.94182 0.90303 0.94915 1.22224 1.01343 0.94175 0.96906 0.89898 1.21801 0.96704 0.96119 0.99003 1.23749 1.00733 0.98017 0.95783 1.20043 0.96925 0.89659 0.84203 0.91997 1.42848 1.57698 1.32387 1.05714 1.19068 1.23917 1.03718 0.90697 0.89141 1.24665 1.00152 0.97970 0.96203 1.69695 1.48563 1.33993 1.05822 0.86579 0.81409 0.82265 0.78462 1.21130 1.21736 1.20316 1.22508 0.99217 0.96758 0.95676 0.90325 1.21509 0.96661 0.91329 0.89920 1.19519 0.97597 0.96453 0.93649 1.21343 0.96683 0.95681 0.99507 1.21160 0.99945 0.99913 0.92376 1.21180 0.97720 0.97503 0.97473 1.21113 0.97804 0.96505 0.98366 1.20907 1.00183 1.00031 0.91558 0.91678 0.91204 0.91010 0.91899 0.91865 0.91281 0.91125 0.90082 0.91948 0.91723 0.92229 0.90697 0.80570 0.93041 0.89962 0.90881 0.85533 0.85920 0.86118 0.86032 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 7.73 37.16 0.29 -0.95 16 2 C -0.04 -0.39 0.59 -156.81 -0.09 -0.48 16 3 C -0.12 -1.22 7.67 37.16 0.28 -0.93 16 4 C 0.54 7.46 5.28 -10.99 -0.06 7.40 16 5 O -0.54 -9.48 16.21 5.55 0.09 -9.39 16 6 N -0.62 -7.99 2.28 -171.57 -0.39 -8.38 16 7 C 0.11 1.18 4.65 -3.86 -0.02 1.16 16 8 C -0.13 -1.47 2.77 -90.16 -0.25 -1.72 16 9 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.10 -1.16 6.73 -25.80 -0.17 -1.33 16 11 C -0.14 -2.20 6.73 -23.33 -0.16 -2.36 16 12 C 0.20 3.60 3.39 -67.71 -0.23 3.37 16 13 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 14 N -0.74 -16.92 4.93 -53.21 -0.26 -17.19 16 15 C -0.24 -6.70 10.46 -15.06 -0.16 -6.86 16 16 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 19 Si 0.88 22.07 27.73 -169.99 -4.71 17.36 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 23 C -0.12 -1.79 2.41 -90.34 -0.22 -2.01 16 24 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 25 C 0.13 1.86 6.83 -3.32 -0.02 1.83 16 26 C -0.07 -0.69 3.64 -104.63 -0.38 -1.07 16 27 C -0.11 -1.18 6.62 -39.59 -0.26 -1.44 16 28 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 29 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 30 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 31 C -0.11 -0.86 8.94 -39.58 -0.35 -1.22 16 32 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.07 0.45 7.35 -51.92 -0.38 0.07 16 34 H 0.07 0.59 5.02 -51.93 -0.26 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 38 H 0.07 0.70 6.37 -51.93 -0.33 0.37 16 39 H 0.08 0.80 4.99 -51.93 -0.26 0.54 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 44 H 0.36 8.21 5.53 -40.82 -0.23 7.99 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.13 1.51 5.71 -52.49 -0.30 1.21 16 49 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 50 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 51 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 52 H 0.12 0.75 7.32 -52.49 -0.38 0.37 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -32.48 393.73 -10.11 -42.60 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.45 Total: 7.97 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -3.09 Total: -10.57 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.12 Total: -53.90 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.48 -10.11 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.943 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds