Wall clock time and date at job start Wed Apr 1 2020 01:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.50695 * 109.46896 * 119.99894 * 2 1 3 5 5 O 1.21284 * 120.00270 * 241.27367 * 4 2 1 6 6 N 1.34778 * 120.00054 * 61.27392 * 4 2 1 7 7 C 1.49213 * 126.05942 * 355.48705 * 6 4 2 8 8 C 1.50350 * 104.86019 * 172.91471 * 7 6 4 9 9 H 1.09003 * 110.05220 * 278.93598 * 8 7 6 10 10 C 1.51210 * 125.53250 * 144.31536 * 8 7 6 11 11 C 1.56405 * 101.49831 * 203.97827 * 10 8 7 12 12 C 1.55943 * 105.85732 * 25.03445 * 11 10 8 13 13 H 1.09003 * 110.49054 * 248.83444 * 12 11 10 14 14 N 1.46496 * 110.49353 * 126.30490 * 12 11 10 15 15 C 1.36941 * 119.99798 * 86.45546 * 14 12 11 16 16 H 1.07998 * 120.00078 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00054 * 179.97438 * 15 14 12 18 18 N 1.31612 * 119.99982 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99726 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47347 * 90.00058 * 19 17 15 21 21 H 1.48501 * 109.47270 * 210.00076 * 19 17 15 22 22 H 1.48498 * 109.47239 * 329.99778 * 19 17 15 23 23 C 1.50295 * 104.15655 * 7.50079 * 12 11 10 24 24 H 1.09002 * 109.99157 * 79.58821 * 23 12 11 25 25 C 1.49697 * 126.05966 * 175.45723 * 6 4 2 26 26 C 1.50701 * 109.47342 * 239.99802 * 2 1 3 27 27 C 1.38222 * 120.00129 * 232.56704 * 26 2 1 28 28 C 1.38237 * 119.99902 * 179.81282 * 27 26 2 29 29 C 1.38228 * 120.00157 * 0.39466 * 28 27 26 30 30 C 1.38244 * 119.99983 * 359.85788 * 29 28 27 31 31 C 1.38235 * 119.99524 * 52.84272 * 26 2 1 32 32 H 1.09001 * 109.47555 * 291.04870 * 1 2 3 33 33 H 1.09009 * 109.47211 * 51.05246 * 1 2 3 34 34 H 1.09006 * 109.46869 * 171.04967 * 1 2 3 35 35 H 1.09000 * 109.46986 * 185.73780 * 3 2 1 36 36 H 1.08997 * 109.47262 * 305.74180 * 3 2 1 37 37 H 1.09004 * 109.46941 * 65.73973 * 3 2 1 38 38 H 1.09005 * 110.35947 * 291.75594 * 7 6 4 39 39 H 1.09002 * 110.36094 * 53.95588 * 7 6 4 40 40 H 1.09001 * 111.06174 * 85.92705 * 10 8 7 41 41 H 1.09002 * 111.02538 * 322.01462 * 10 8 7 42 42 H 1.09004 * 110.18288 * 265.90938 * 11 10 8 43 43 H 1.09000 * 110.18242 * 144.15037 * 11 10 8 44 44 H 0.96994 * 120.00336 * 266.45423 * 14 12 11 45 45 H 0.97005 * 120.00177 * 179.97438 * 18 17 15 46 46 H 1.09004 * 110.84374 * 36.69501 * 25 6 4 47 47 H 1.08996 * 111.02160 * 273.16414 * 25 6 4 48 48 H 1.07999 * 120.00139 * 359.97438 * 27 26 2 49 49 H 1.08006 * 120.00167 * 180.22948 * 28 27 26 50 50 H 1.08004 * 120.00280 * 179.83612 * 29 28 27 51 51 H 1.07996 * 119.99791 * 179.97438 * 30 29 28 52 52 H 1.07999 * 120.00376 * 359.97438 * 31 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7103 -0.1145 2.0404 6 7 1.7280 -2.0080 1.4309 7 6 0.8316 -2.8418 0.5778 8 6 0.9685 -4.2364 1.1227 9 1 1.8721 -4.7036 0.7312 10 6 -0.1411 -5.2603 1.2054 11 6 0.3716 -6.1831 2.3595 12 6 1.3169 -5.2959 3.2263 13 1 2.3504 -5.6270 3.1244 14 7 0.9052 -5.3290 4.6318 15 6 1.3632 -6.3219 5.4562 16 1 2.0276 -7.0808 5.0701 17 6 0.9736 -6.3530 6.7882 18 7 1.4134 -7.3075 7.5804 19 14 -0.1749 -5.0399 7.4562 20 1 -1.5826 -5.4834 7.2920 21 1 0.1098 -4.8195 8.8969 22 1 0.0350 -3.7729 6.7108 23 6 1.1483 -3.9148 2.6580 24 1 0.2313 -3.4647 3.0384 25 6 2.2298 -2.8683 2.5484 26 6 2.0324 -0.7104 -1.2304 27 6 2.9488 -1.7381 -1.1094 28 6 3.4066 -2.3924 -2.2378 29 6 2.9543 -2.0134 -3.4878 30 6 2.0417 -0.9821 -3.6092 31 6 1.5810 -0.3305 -2.4805 32 1 -0.3634 0.3691 0.9591 33 1 -0.3634 0.6460 -0.7993 34 1 -0.3633 -1.0152 -0.1599 35 1 3.1251 1.4442 -0.1027 36 1 1.5951 1.9852 -0.8341 37 1 1.7629 1.9258 0.9369 38 1 -0.1999 -2.5003 0.6645 39 1 1.1563 -2.8055 -0.4621 40 1 -0.2317 -5.8160 0.2720 41 1 -1.0878 -4.7905 1.4722 42 1 0.9222 -7.0292 1.9482 43 1 -0.4671 -6.5364 2.9593 44 1 0.3083 -4.6476 4.9785 45 1 1.1414 -7.3291 8.5113 46 1 2.3105 -2.2957 3.4725 47 1 3.1861 -3.3241 2.2919 48 1 3.3051 -2.0317 -0.1330 49 1 4.1199 -3.1979 -2.1429 50 1 3.3140 -2.5228 -4.3696 51 1 1.6887 -0.6858 -4.5859 52 1 0.8681 0.4752 -2.5754 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:26 Heat of formation + Delta-G solvation = 9.324621 kcal Electronic energy + Delta-G solvation = -31297.773084 eV Core-core repulsion = 27455.212613 eV Total energy + Delta-G solvation = -3842.560472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32747 -40.72798 -39.46982 -36.96261 -36.19093 -35.11401 -33.09546 -31.95247 -30.86578 -30.69437 -30.05739 -28.22883 -27.11746 -25.55199 -24.58023 -23.83202 -23.37608 -21.95873 -21.57768 -20.60853 -19.86159 -19.55506 -18.39078 -17.70084 -17.36976 -16.62582 -16.25951 -16.21578 -15.95300 -15.90068 -15.33513 -15.15080 -15.02766 -14.67358 -14.63578 -14.41832 -14.28158 -14.09936 -13.81406 -13.59388 -13.27776 -13.23726 -13.13279 -13.08389 -12.86946 -12.81614 -12.63169 -12.39553 -12.33492 -12.21646 -12.06012 -11.92097 -11.83980 -11.64694 -11.56661 -11.40558 -11.07031 -10.99804 -10.74841 -9.82264 -9.71251 -9.56354 -9.30801 -8.03483 -5.35869 0.43331 0.52254 1.35068 1.37665 1.44510 1.50881 1.75245 2.46235 2.88126 2.89453 3.29034 3.34330 3.49539 3.56212 3.79717 3.92444 3.97845 4.00910 4.12747 4.14141 4.20399 4.25329 4.34034 4.39554 4.43044 4.52496 4.59938 4.62630 4.64943 4.66993 4.69449 4.71914 4.82033 4.83520 4.85576 4.89707 4.92185 5.04931 5.09899 5.12886 5.18370 5.20047 5.20434 5.27605 5.32423 5.49111 5.52500 5.61635 5.66134 5.67555 5.78373 6.12033 6.21638 6.42510 7.02608 7.06996 7.84151 8.01731 9.18268 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.003059 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.943732 B = 9150.539185 C = 9956.152872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.122 4.122 4 C 0.533 3.467 5 O -0.588 6.588 6 N -0.616 5.616 7 C 0.117 3.883 8 C -0.106 4.106 9 H 0.087 0.913 10 C -0.083 4.083 11 C -0.138 4.138 12 C 0.192 3.808 13 H 0.047 0.953 14 N -0.749 5.749 15 C -0.224 4.224 16 H 0.059 0.941 17 C -0.063 4.063 18 N -0.984 5.984 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.259 1.259 23 C -0.122 4.122 24 H 0.074 0.926 25 C 0.127 3.873 26 C -0.080 4.080 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.122 4.122 30 C -0.117 4.117 31 C -0.106 4.106 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.363 0.637 45 H 0.257 0.743 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.127 0.873 50 H 0.141 0.859 51 H 0.149 0.851 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 15.511 -29.852 33.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.179 4.179 4 C 0.323 3.677 5 O -0.468 6.468 6 N -0.350 5.350 7 C -0.003 4.003 8 C -0.125 4.125 9 H 0.105 0.895 10 C -0.121 4.121 11 C -0.178 4.178 12 C 0.083 3.917 13 H 0.065 0.935 14 N -0.392 5.392 15 C -0.355 4.355 16 H 0.077 0.923 17 C -0.255 4.255 18 N -0.635 5.635 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.226 1.226 22 H -0.184 1.184 23 C -0.142 4.142 24 H 0.093 0.907 25 C 0.005 3.995 26 C -0.080 4.080 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.140 4.140 30 C -0.134 4.134 31 C -0.124 4.124 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.119 0.881 49 H 0.145 0.855 50 H 0.159 0.841 51 H 0.167 0.833 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.682 15.738 -29.372 33.525 hybrid contribution 0.015 0.148 1.850 1.856 sum -3.667 15.886 -27.522 31.989 Atomic orbital electron populations 1.22098 0.89895 1.04584 1.03601 1.19740 0.98751 0.95966 0.88897 1.21691 1.00884 0.92331 1.03003 1.20800 0.78993 0.80223 0.87636 1.90687 1.41620 1.66185 1.48304 1.49852 1.47809 1.09514 1.27788 1.21754 0.94575 0.88854 0.95163 1.22188 1.01681 0.94925 0.93742 0.89483 1.21719 0.96658 0.95229 0.98462 1.23568 0.99294 0.98450 0.96499 1.20302 0.96703 0.92385 0.82288 0.93487 1.42880 1.57719 1.31256 1.07343 1.19035 1.21917 1.03381 0.91157 0.92266 1.25434 1.02725 1.00594 0.96728 1.69870 1.51016 1.36567 1.06058 0.85470 0.79398 0.80100 0.77157 1.20157 1.22567 1.18434 1.22264 0.98762 0.94952 0.98229 0.90716 1.21352 0.97022 0.91383 0.89776 1.19460 0.98068 0.96522 0.93955 1.21228 0.98010 0.97104 0.98927 1.21285 1.00242 1.00172 0.92631 1.21472 0.97424 0.97595 0.97493 1.21472 0.96907 0.95658 0.99404 1.21152 1.00171 1.00354 0.90680 0.92707 0.88286 0.90382 0.93716 0.88662 0.92760 0.89403 0.88363 0.88950 0.90705 0.91791 0.92795 0.80376 0.93437 0.92818 0.90913 0.88054 0.85505 0.84111 0.83339 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.73 71.98 0.56 -1.41 16 2 C -0.03 -0.58 0.59 -53.67 -0.03 -0.61 16 3 C -0.12 -2.26 7.67 71.98 0.55 -1.70 16 4 C 0.53 14.81 5.28 87.66 0.46 15.28 16 5 O -0.59 -21.77 16.21 -3.04 -0.05 -21.82 16 6 N -0.62 -15.61 2.28 -815.10 -1.86 -17.47 16 7 C 0.12 2.17 4.65 85.00 0.40 2.57 16 8 C -0.11 -2.20 2.77 -10.50 -0.03 -2.23 16 9 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 10 C -0.08 -1.67 6.73 31.20 0.21 -1.46 16 11 C -0.14 -4.12 6.73 32.80 0.22 -3.90 16 12 C 0.19 6.89 3.39 45.14 0.15 7.04 16 13 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 14 N -0.75 -34.57 4.93 -322.25 -1.59 -36.16 16 15 C -0.22 -12.70 10.46 84.03 0.88 -11.82 16 16 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 17 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 18 N -0.98 -63.72 13.97 21.65 0.30 -63.42 16 19 Si 0.95 46.53 27.73 68.60 1.90 48.43 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 22 H -0.26 -11.75 6.52 99.48 0.65 -11.10 16 23 C -0.12 -3.55 2.41 -10.61 -0.03 -3.58 16 24 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 25 C 0.13 3.82 6.83 85.07 0.58 4.40 16 26 C -0.08 -1.33 3.64 -19.87 -0.07 -1.40 16 27 C -0.13 -2.59 6.62 22.27 0.15 -2.45 16 28 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 29 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 30 C -0.12 -1.18 10.05 22.27 0.22 -0.96 16 31 C -0.11 -1.22 8.94 22.27 0.20 -1.02 16 32 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.10 0.79 7.35 -2.38 -0.02 0.77 16 34 H 0.08 0.96 5.02 -2.38 -0.01 0.95 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.05 1.15 7.91 -2.39 -0.02 1.14 16 38 H 0.09 1.40 6.37 -2.38 -0.02 1.39 16 39 H 0.10 1.60 4.99 -2.39 -0.01 1.59 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.05 1.86 7.98 -2.39 -0.02 1.84 16 44 H 0.36 16.42 5.53 -92.71 -0.51 15.91 16 45 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 46 H 0.05 1.91 8.06 -2.38 -0.02 1.89 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.10 2.44 5.71 -2.91 -0.02 2.42 16 49 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 50 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 51 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 52 H 0.15 0.97 7.32 -2.91 -0.02 0.95 16 Total: -1.00 -75.38 393.73 4.38 -71.00 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.34 Total: 28.99 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.33 Total: -9.55 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -3.15 Total: -117.05 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -75.38 4.38 -71.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.323 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds