Wall clock time and date at job start Wed Apr 1 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 H 1.09004 * 109.47156 * 305.40812 * 3 2 1 5 5 C 1.52995 * 109.47460 * 185.40459 * 3 2 1 6 6 C 1.50701 * 109.46681 * 64.99963 * 5 3 2 7 7 C 1.38237 * 120.00234 * 269.72626 * 6 5 3 8 8 C 1.38233 * 120.00274 * 179.76958 * 7 6 5 9 9 C 1.38236 * 119.99859 * 0.50481 * 8 7 6 10 10 C 1.38240 * 120.00164 * 359.74925 * 9 8 7 11 11 C 1.38239 * 119.99982 * 90.00523 * 6 5 3 12 12 C 1.50705 * 109.47148 * 65.40120 * 3 2 1 13 13 O 1.21286 * 119.99706 * 33.81822 * 12 3 2 14 14 N 1.34778 * 120.00286 * 213.80831 * 12 3 2 15 15 C 1.47162 * 120.70842 * 184.94526 * 14 12 3 16 16 C 1.53881 * 108.03185 * 132.73660 * 15 14 12 17 17 H 1.09001 * 112.09254 * 181.90477 * 16 15 14 18 18 C 1.54549 * 108.37151 * 306.25100 * 16 15 14 19 19 C 1.54823 * 104.74384 * 89.16861 * 18 16 15 20 20 C 1.54548 * 104.74431 * 0.02562 * 19 18 16 21 21 H 1.09003 * 112.68354 * 146.80647 * 20 19 18 22 22 C 1.47157 * 120.70874 * 4.92418 * 14 12 3 23 23 N 1.48305 * 104.35897 * 24.82317 * 20 19 18 24 24 C 1.36933 * 128.07913 * 139.08482 * 23 20 19 25 25 H 1.08002 * 120.00037 * 345.09127 * 24 23 20 26 26 C 1.38810 * 119.99996 * 165.09895 * 24 23 20 27 27 N 1.31616 * 120.00371 * 350.57260 * 26 24 23 28 28 Si 1.86803 * 119.99960 * 170.57975 * 26 24 23 29 29 H 1.48499 * 109.47368 * 179.97438 * 28 26 24 30 30 H 1.48505 * 109.47148 * 299.99624 * 28 26 24 31 31 H 1.48503 * 109.47212 * 59.99473 * 28 26 24 32 32 H 1.09001 * 109.47164 * 304.13946 * 1 2 3 33 33 H 1.08992 * 109.47131 * 64.14368 * 1 2 3 34 34 H 1.09005 * 109.46948 * 184.14205 * 1 2 3 35 35 H 1.08993 * 109.46936 * 239.99954 * 2 1 3 36 36 H 1.08999 * 109.47211 * 120.00076 * 2 1 3 37 37 H 1.08994 * 109.47256 * 184.99857 * 5 3 2 38 38 H 1.08996 * 109.47448 * 305.00475 * 5 3 2 39 39 H 1.08004 * 119.99734 * 359.97438 * 7 6 5 40 40 H 1.08001 * 120.00279 * 180.23514 * 8 7 6 41 41 H 1.07999 * 120.00518 * 179.72586 * 9 8 7 42 42 H 1.07994 * 120.00283 * 179.97438 * 10 9 8 43 43 H 1.07998 * 119.99768 * 359.97438 * 11 6 5 44 44 H 1.09003 * 109.74985 * 13.10152 * 15 14 12 45 45 H 1.09004 * 109.79007 * 252.39899 * 15 14 12 46 46 H 1.08998 * 110.36248 * 208.14328 * 18 16 15 47 47 H 1.09001 * 110.35762 * 330.45327 * 18 16 15 48 48 H 1.09001 * 110.30852 * 241.24707 * 19 18 16 49 49 H 1.09005 * 110.61266 * 118.91326 * 19 18 16 50 50 H 1.09005 * 109.75124 * 346.89823 * 22 14 12 51 51 H 1.08996 * 109.74890 * 107.58094 * 22 14 12 52 52 H 0.96996 * 120.00359 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5639 1.4447 -0.1359 6 6 3.9490 0.8857 -1.4813 7 6 4.1746 -0.4703 -1.6276 8 6 4.5232 -0.9837 -2.8628 9 6 4.6564 -0.1398 -3.9495 10 6 4.4359 1.2169 -3.8022 11 6 4.0823 1.7297 -2.5680 12 6 1.6498 2.1133 1.2919 13 8 1.6056 1.4706 2.3196 14 7 1.3503 3.4273 1.3054 15 6 1.0729 4.1219 2.5728 16 6 1.8812 5.4312 2.5852 17 1 1.7496 5.9855 3.5145 18 6 3.3641 5.0908 2.3138 19 6 3.5042 5.1406 0.7727 20 6 2.0926 5.5070 0.2611 21 1 2.1180 6.1169 -0.6420 22 6 1.2941 4.1981 0.0531 23 7 1.4618 6.2179 1.3996 24 6 0.6716 7.3356 1.3640 25 1 0.6350 7.9429 0.4717 26 6 -0.0824 7.6882 2.4749 27 7 -0.1855 6.8579 3.4909 28 14 -0.9510 9.3412 2.5278 29 1 -1.6839 9.4744 3.8124 30 1 0.0514 10.4310 2.4140 31 1 -1.9113 9.4322 1.3987 32 1 -0.3633 0.5767 0.8506 33 1 -0.3633 0.4481 -0.9247 34 1 -0.3633 -1.0250 0.0742 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.9351 2.4656 -0.0468 38 1 3.9998 0.8296 0.6513 39 1 4.0753 -1.1290 -0.7774 40 1 4.6958 -2.0436 -2.9779 41 1 4.9330 -0.5402 -4.9136 42 1 4.5403 1.8763 -4.6510 43 1 3.9100 2.7896 -2.4529 44 1 1.3757 3.4941 3.4108 45 1 0.0085 4.3453 2.6459 46 1 4.0146 5.8302 2.7808 47 1 3.5976 4.0920 2.6828 48 1 3.8062 4.1663 0.3886 49 1 4.2243 5.9038 0.4773 50 1 1.7415 3.6201 -0.7556 51 1 0.2573 4.4304 -0.1902 52 1 -0.7120 7.1045 4.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029497484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:04 Heat of formation + Delta-G solvation = 14.624226 kcal Electronic energy + Delta-G solvation = -31781.647030 eV Core-core repulsion = 27939.316367 eV Total energy + Delta-G solvation = -3842.330663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.40201 -39.32587 -37.98330 -35.23892 -33.71579 -32.36100 -32.09006 -31.02133 -30.61662 -29.37187 -28.76120 -26.20718 -24.77641 -23.87643 -23.60132 -22.81292 -21.86827 -21.02041 -19.73540 -19.31918 -18.29131 -17.42431 -16.81970 -16.18988 -15.63334 -15.25227 -15.20696 -14.88007 -14.69646 -14.33331 -13.85793 -13.75431 -13.56794 -13.38625 -13.26349 -13.11829 -12.95402 -12.70643 -12.55904 -12.40777 -11.91265 -11.84413 -11.64126 -11.59046 -11.25434 -11.13932 -11.01838 -10.97685 -10.90042 -10.84127 -10.69658 -10.53974 -10.33656 -10.06123 -9.83808 -9.67576 -9.57496 -9.14756 -9.01255 -8.80572 -8.71310 -8.01460 -6.84968 -5.85167 -3.20819 1.22506 1.28015 3.13254 3.34811 3.40243 3.41193 3.60464 3.72878 4.39762 4.59366 4.68035 4.86578 4.88066 4.96339 5.06728 5.10100 5.12934 5.29025 5.33827 5.34352 5.42247 5.48875 5.56158 5.60614 5.67161 5.69055 5.75848 5.81911 5.84629 5.90888 5.93261 5.98087 6.02749 6.06260 6.25265 6.31171 6.33719 6.34557 6.38648 6.39608 6.44179 6.51088 6.56235 6.64564 6.70642 6.79290 6.87311 6.89638 7.01639 7.31143 7.49157 7.69215 8.12010 8.15100 8.76926 9.03954 9.66344 10.42696 11.27370 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003240 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.082762 B = 8638.922932 C = 9315.980347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.073 4.073 6 C -0.072 4.072 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.115 4.115 12 C 0.513 3.487 13 O -0.558 6.558 14 N -0.590 5.590 15 C 0.113 3.887 16 C 0.167 3.833 17 H 0.118 0.882 18 C -0.135 4.135 19 C -0.124 4.124 20 C 0.134 3.866 21 H 0.077 0.923 22 C 0.091 3.909 23 N -0.584 5.584 24 C -0.229 4.229 25 H 0.076 0.924 26 C -0.002 4.002 27 N -0.912 5.912 28 Si 0.912 3.088 29 H -0.290 1.290 30 H -0.285 1.285 31 H -0.285 1.285 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -12.780 -12.306 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.124 4.124 4 H 0.108 0.892 5 C -0.111 4.111 6 C -0.072 4.072 7 C -0.133 4.133 8 C -0.139 4.139 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.133 4.133 12 C 0.300 3.700 13 O -0.437 6.437 14 N -0.321 5.321 15 C -0.010 4.010 16 C 0.060 3.940 17 H 0.136 0.864 18 C -0.174 4.174 19 C -0.163 4.163 20 C 0.025 3.975 21 H 0.095 0.905 22 C -0.035 4.035 23 N -0.305 5.305 24 C -0.357 4.357 25 H 0.094 0.906 26 C -0.199 4.199 27 N -0.558 5.558 28 Si 0.742 3.258 29 H -0.216 1.216 30 H -0.212 1.212 31 H -0.211 1.211 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.348 -12.904 -11.593 19.251 hybrid contribution -0.622 0.866 -0.093 1.070 sum 7.726 -12.038 -11.686 18.471 Atomic orbital electron populations 1.21771 0.95792 1.01583 1.01804 1.21486 0.96086 0.94504 1.02561 1.21379 0.96070 0.97860 0.97074 0.89160 1.20601 0.94002 1.02364 0.94126 1.19846 0.98428 0.93649 0.95250 1.21104 0.99720 0.94830 0.97598 1.21124 1.00133 0.99620 0.93034 1.21122 1.00990 0.93832 0.98672 1.21143 0.99718 0.95415 0.97383 1.21128 0.99793 0.99917 0.92485 1.20369 0.77422 0.81918 0.90267 1.90628 1.54557 1.63673 1.34851 1.48229 1.66976 1.07818 1.09092 1.22407 1.01850 0.93557 0.83200 1.21900 0.87877 0.89868 0.94395 0.86450 1.22706 0.99812 0.99615 0.95302 1.22618 0.97489 0.99416 0.96740 1.22113 0.91366 0.90911 0.93061 0.90501 1.22767 1.01328 0.94272 0.85107 1.45183 1.56462 1.28853 1.00003 1.18942 1.17913 0.98628 1.00168 0.90633 1.24830 0.98861 0.98611 0.97642 1.69822 1.43613 1.34659 1.07733 0.86214 0.79197 0.83492 0.76889 1.21611 1.21178 1.21129 0.92360 0.93115 0.92815 0.91237 0.90870 0.90015 0.90238 0.86007 0.86307 0.86430 0.86171 0.85831 0.91528 0.90399 0.92803 0.92953 0.92802 0.92614 0.91511 0.91730 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.79 37.16 0.36 -1.61 16 2 C -0.11 -1.37 4.90 -26.73 -0.13 -1.50 16 3 C -0.10 -1.38 1.53 -91.77 -0.14 -1.52 16 4 H 0.09 1.16 5.90 -51.93 -0.31 0.86 16 5 C -0.07 -0.88 4.82 -27.89 -0.13 -1.01 16 6 C -0.07 -0.77 4.71 -104.62 -0.49 -1.26 16 7 C -0.11 -1.14 7.88 -39.58 -0.31 -1.45 16 8 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 9 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 10 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 11 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 12 C 0.51 9.04 5.71 -10.98 -0.06 8.98 16 13 O -0.56 -11.63 15.43 5.55 0.09 -11.55 16 14 N -0.59 -10.99 2.28 -171.00 -0.39 -11.38 16 15 C 0.11 2.47 5.81 -3.22 -0.02 2.45 16 16 C 0.17 3.73 3.09 -65.65 -0.20 3.53 16 17 H 0.12 3.01 6.33 -51.93 -0.33 2.68 16 18 C -0.14 -2.55 6.23 -24.96 -0.16 -2.71 16 19 C -0.12 -2.06 6.24 -24.96 -0.16 -2.21 16 20 C 0.13 2.48 4.32 -65.21 -0.28 2.19 16 21 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 22 C 0.09 1.54 5.76 -2.77 -0.02 1.53 16 23 N -0.58 -13.51 2.80 -152.08 -0.43 -13.94 16 24 C -0.23 -5.88 10.37 -15.06 -0.16 -6.03 16 25 H 0.08 1.89 7.85 -52.49 -0.41 1.47 16 26 C 0.00 -0.06 5.42 -17.43 -0.09 -0.15 16 27 N -0.91 -24.94 10.37 55.49 0.58 -24.36 16 28 Si 0.91 21.08 29.56 -169.99 -5.03 16.05 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 31 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 32 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.77 5.91 -51.93 -0.31 0.46 16 36 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 37 H 0.08 1.00 5.67 -51.93 -0.29 0.71 16 38 H 0.08 0.98 8.08 -51.93 -0.42 0.57 16 39 H 0.12 1.10 8.00 -52.48 -0.42 0.68 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.07 1.49 7.16 -51.93 -0.37 1.12 16 45 H 0.08 1.96 7.80 -51.93 -0.40 1.56 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 48 H 0.05 0.79 5.45 -51.93 -0.28 0.51 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.91 5.53 -51.93 -0.29 0.63 16 51 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -29.05 393.91 -11.19 -40.24 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -8.37 Total: 5.82 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.57 Total: -6.81 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.24 Total: -49.69 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.05 -11.19 -40.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029497484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.865 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds