Wall clock time and date at job start Wed Apr 1 2020 02:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47115 * 2 1 4 4 H 1.09004 * 109.47156 * 305.40812 * 3 2 1 5 5 C 1.52995 * 109.47460 * 185.40459 * 3 2 1 6 6 C 1.50701 * 109.46681 * 64.99963 * 5 3 2 7 7 C 1.38237 * 120.00234 * 269.72626 * 6 5 3 8 8 C 1.38233 * 120.00274 * 179.76958 * 7 6 5 9 9 C 1.38236 * 119.99859 * 0.50481 * 8 7 6 10 10 C 1.38240 * 120.00164 * 359.74925 * 9 8 7 11 11 C 1.38239 * 119.99982 * 90.00523 * 6 5 3 12 12 C 1.50705 * 109.47148 * 65.40120 * 3 2 1 13 13 O 1.21286 * 119.99706 * 33.81822 * 12 3 2 14 14 N 1.34778 * 120.00286 * 213.80831 * 12 3 2 15 15 C 1.47162 * 120.70842 * 184.94526 * 14 12 3 16 16 C 1.53881 * 108.03185 * 132.73660 * 15 14 12 17 17 H 1.09001 * 112.09254 * 181.90477 * 16 15 14 18 18 C 1.54549 * 108.37151 * 306.25100 * 16 15 14 19 19 C 1.54823 * 104.74384 * 89.16861 * 18 16 15 20 20 C 1.54548 * 104.74431 * 0.02562 * 19 18 16 21 21 H 1.09003 * 112.68354 * 146.80647 * 20 19 18 22 22 C 1.47157 * 120.70874 * 4.92418 * 14 12 3 23 23 N 1.48305 * 104.35897 * 24.82317 * 20 19 18 24 24 C 1.36933 * 128.07913 * 139.08482 * 23 20 19 25 25 H 1.08002 * 120.00037 * 345.09127 * 24 23 20 26 26 C 1.38810 * 119.99996 * 165.09895 * 24 23 20 27 27 N 1.31616 * 120.00371 * 350.57260 * 26 24 23 28 28 Si 1.86803 * 119.99960 * 170.57975 * 26 24 23 29 29 H 1.48499 * 109.47368 * 179.97438 * 28 26 24 30 30 H 1.48505 * 109.47148 * 299.99624 * 28 26 24 31 31 H 1.48503 * 109.47212 * 59.99473 * 28 26 24 32 32 H 1.09001 * 109.47164 * 304.13946 * 1 2 3 33 33 H 1.08992 * 109.47131 * 64.14368 * 1 2 3 34 34 H 1.09005 * 109.46948 * 184.14205 * 1 2 3 35 35 H 1.08993 * 109.46936 * 239.99954 * 2 1 3 36 36 H 1.08999 * 109.47211 * 120.00076 * 2 1 3 37 37 H 1.08994 * 109.47256 * 184.99857 * 5 3 2 38 38 H 1.08996 * 109.47448 * 305.00475 * 5 3 2 39 39 H 1.08004 * 119.99734 * 359.97438 * 7 6 5 40 40 H 1.08001 * 120.00279 * 180.23514 * 8 7 6 41 41 H 1.07999 * 120.00518 * 179.72586 * 9 8 7 42 42 H 1.07994 * 120.00283 * 179.97438 * 10 9 8 43 43 H 1.07998 * 119.99768 * 359.97438 * 11 6 5 44 44 H 1.09003 * 109.74985 * 13.10152 * 15 14 12 45 45 H 1.09004 * 109.79007 * 252.39899 * 15 14 12 46 46 H 1.08998 * 110.36248 * 208.14328 * 18 16 15 47 47 H 1.09001 * 110.35762 * 330.45327 * 18 16 15 48 48 H 1.09001 * 110.30852 * 241.24707 * 19 18 16 49 49 H 1.09005 * 110.61266 * 118.91326 * 19 18 16 50 50 H 1.09005 * 109.75124 * 346.89823 * 22 14 12 51 51 H 1.08996 * 109.74890 * 107.58094 * 22 14 12 52 52 H 0.96996 * 120.00359 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5639 1.4447 -0.1359 6 6 3.9490 0.8857 -1.4813 7 6 4.1746 -0.4703 -1.6276 8 6 4.5232 -0.9837 -2.8628 9 6 4.6564 -0.1398 -3.9495 10 6 4.4359 1.2169 -3.8022 11 6 4.0823 1.7297 -2.5680 12 6 1.6498 2.1133 1.2919 13 8 1.6056 1.4706 2.3196 14 7 1.3503 3.4273 1.3054 15 6 1.0729 4.1219 2.5728 16 6 1.8812 5.4312 2.5852 17 1 1.7496 5.9855 3.5145 18 6 3.3641 5.0908 2.3138 19 6 3.5042 5.1406 0.7727 20 6 2.0926 5.5070 0.2611 21 1 2.1180 6.1169 -0.6420 22 6 1.2941 4.1981 0.0531 23 7 1.4618 6.2179 1.3996 24 6 0.6716 7.3356 1.3640 25 1 0.6350 7.9429 0.4717 26 6 -0.0824 7.6882 2.4749 27 7 -0.1855 6.8579 3.4909 28 14 -0.9510 9.3412 2.5278 29 1 -1.6839 9.4744 3.8124 30 1 0.0514 10.4310 2.4140 31 1 -1.9113 9.4322 1.3987 32 1 -0.3633 0.5767 0.8506 33 1 -0.3633 0.4481 -0.9247 34 1 -0.3633 -1.0250 0.0742 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.9351 2.4656 -0.0468 38 1 3.9998 0.8296 0.6513 39 1 4.0753 -1.1290 -0.7774 40 1 4.6958 -2.0436 -2.9779 41 1 4.9330 -0.5402 -4.9136 42 1 4.5403 1.8763 -4.6510 43 1 3.9100 2.7896 -2.4529 44 1 1.3757 3.4941 3.4108 45 1 0.0085 4.3453 2.6459 46 1 4.0146 5.8302 2.7808 47 1 3.5976 4.0920 2.6828 48 1 3.8062 4.1663 0.3886 49 1 4.2243 5.9038 0.4773 50 1 1.7415 3.6201 -0.7556 51 1 0.2573 4.4304 -0.1902 52 1 -0.7120 7.1045 4.2673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029497484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:03 Heat of formation + Delta-G solvation = 1.892617 kcal Electronic energy + Delta-G solvation = -31782.199114 eV Core-core repulsion = 27939.316367 eV Total energy + Delta-G solvation = -3842.882747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.79757 -40.23742 -39.40617 -36.35378 -35.39545 -34.13339 -32.96419 -32.24778 -31.65621 -31.06795 -29.81721 -27.76988 -26.04946 -25.49747 -24.99827 -23.65190 -22.88921 -21.91660 -21.24285 -20.93155 -19.82082 -18.78996 -17.99615 -17.44552 -16.95090 -16.62501 -16.54749 -16.02326 -15.87079 -15.57332 -15.43718 -15.02688 -14.67842 -14.62622 -14.46382 -14.39856 -14.14484 -13.86667 -13.64175 -13.53012 -13.37180 -13.25198 -13.20524 -12.86011 -12.75056 -12.68645 -12.60074 -12.12926 -12.01221 -11.90619 -11.87940 -11.79430 -11.74459 -11.66169 -11.42157 -11.34054 -11.13090 -10.79137 -10.47130 -9.69441 -9.68386 -9.49478 -8.69073 -7.83934 -5.19493 0.52576 0.61647 1.48966 1.50482 1.56595 1.73239 2.15953 2.51733 2.98660 3.35348 3.45010 3.54797 3.73442 4.02920 4.04916 4.08305 4.13181 4.16205 4.16951 4.26459 4.28653 4.32648 4.40355 4.41351 4.47185 4.60224 4.64190 4.65834 4.71167 4.76340 4.82401 4.87322 4.94312 4.98525 5.00178 5.06021 5.10212 5.15817 5.17834 5.26087 5.27731 5.30000 5.35676 5.36779 5.42918 5.55335 5.59460 5.69037 5.74600 5.82810 5.86418 6.23239 6.24079 6.66944 7.06580 7.30092 7.74475 8.53030 9.27194 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.003240 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.082762 B = 8638.922932 C = 9315.980347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.091 4.091 4 H 0.104 0.896 5 C -0.065 4.065 6 C -0.083 4.083 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.131 4.131 10 C -0.125 4.125 11 C -0.124 4.124 12 C 0.512 3.488 13 O -0.593 6.593 14 N -0.592 5.592 15 C 0.130 3.870 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.127 4.127 19 C -0.111 4.111 20 C 0.129 3.871 21 H 0.096 0.904 22 C 0.096 3.904 23 N -0.605 5.605 24 C -0.231 4.231 25 H 0.083 0.917 26 C -0.058 4.058 27 N -0.939 5.939 28 Si 0.971 3.029 29 H -0.302 1.302 30 H -0.280 1.280 31 H -0.279 1.279 32 H 0.023 0.977 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.111 0.889 51 H 0.046 0.954 52 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.349 -13.709 -16.026 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.112 4.112 4 H 0.122 0.878 5 C -0.102 4.102 6 C -0.083 4.083 7 C -0.142 4.142 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.143 4.143 11 C -0.142 4.142 12 C 0.302 3.698 13 O -0.475 6.475 14 N -0.323 5.323 15 C 0.005 3.995 16 C 0.058 3.942 17 H 0.094 0.906 18 C -0.166 4.166 19 C -0.150 4.150 20 C 0.022 3.978 21 H 0.114 0.886 22 C -0.029 4.029 23 N -0.326 5.326 24 C -0.359 4.359 25 H 0.101 0.899 26 C -0.252 4.252 27 N -0.587 5.587 28 Si 0.800 3.200 29 H -0.228 1.228 30 H -0.206 1.206 31 H -0.205 1.205 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.129 0.871 51 H 0.065 0.935 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.135 -13.844 -15.368 23.033 hybrid contribution -1.150 1.069 1.022 1.874 sum 8.985 -12.775 -14.345 21.206 Atomic orbital electron populations 1.21771 0.96129 1.02077 1.00896 1.21473 0.95700 0.93920 1.03005 1.21380 0.97573 0.97913 0.94337 0.87794 1.20492 0.92269 1.02378 0.95094 1.19713 0.99943 0.94130 0.94532 1.21243 0.99967 0.94723 0.98314 1.21394 0.99566 1.00772 0.92688 1.21457 1.00030 0.93811 0.99553 1.21421 0.99202 0.96009 0.97654 1.21302 0.99900 1.00382 0.92646 1.21177 0.76015 0.81116 0.91470 1.90613 1.55799 1.64305 1.36775 1.48230 1.67223 1.08444 1.08398 1.21877 0.99065 0.93743 0.84783 1.21702 0.90273 0.89303 0.92957 0.90579 1.22579 0.96896 0.99577 0.97559 1.22560 0.96589 1.01478 0.94341 1.22407 0.91935 0.91139 0.92319 0.88635 1.22788 1.00557 0.94210 0.85300 1.45373 1.56483 1.28884 1.01877 1.19295 1.17211 0.99414 1.00024 0.89895 1.25542 1.00409 1.01438 0.97824 1.70036 1.44650 1.36007 1.08032 0.85275 0.78184 0.80305 0.76222 1.22835 1.20640 1.20466 0.95783 0.91773 0.91352 0.88819 0.92269 0.90001 0.91006 0.85665 0.84508 0.84393 0.84409 0.84953 0.92983 0.94727 0.92722 0.92792 0.90124 0.90994 0.87085 0.93522 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.79 71.98 0.70 -3.02 16 2 C -0.10 -2.42 4.90 30.59 0.15 -2.27 16 3 C -0.09 -2.25 1.53 -11.54 -0.02 -2.27 16 4 H 0.10 2.31 5.90 -2.39 -0.01 2.29 16 5 C -0.06 -1.38 4.82 29.85 0.14 -1.24 16 6 C -0.08 -1.52 4.71 -19.86 -0.09 -1.61 16 7 C -0.12 -2.10 7.88 22.27 0.18 -1.92 16 8 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 9 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 10 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 11 C -0.12 -2.05 9.70 22.27 0.22 -1.83 16 12 C 0.51 17.90 5.71 87.66 0.50 18.40 16 13 O -0.59 -25.34 15.43 -3.05 -0.05 -25.38 16 14 N -0.59 -22.08 2.28 -813.31 -1.86 -23.94 16 15 C 0.13 6.00 5.81 86.55 0.50 6.50 16 16 C 0.17 7.66 3.09 45.46 0.14 7.80 16 17 H 0.08 4.16 6.33 -2.39 -0.02 4.14 16 18 C -0.13 -4.73 6.23 31.74 0.20 -4.54 16 19 C -0.11 -3.38 6.24 31.74 0.20 -3.18 16 20 C 0.13 4.50 4.32 45.76 0.20 4.69 16 21 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 22 C 0.10 3.09 5.76 86.85 0.50 3.59 16 23 N -0.60 -28.13 2.80 -635.07 -1.78 -29.91 16 24 C -0.23 -11.96 10.37 84.03 0.87 -11.08 16 25 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 26 C -0.06 -3.14 5.42 84.86 0.46 -2.68 16 27 N -0.94 -54.14 10.37 21.65 0.22 -53.92 16 28 Si 0.97 44.34 29.56 68.60 2.03 46.37 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 30 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 31 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 32 H 0.02 0.74 7.12 -2.39 -0.02 0.72 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.09 1.78 5.91 -2.39 -0.01 1.77 16 36 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 37 H 0.08 1.73 5.67 -2.39 -0.01 1.71 16 38 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 39 H 0.13 1.95 8.00 -2.91 -0.02 1.93 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.05 2.49 7.16 -2.39 -0.02 2.48 16 45 H 0.03 1.87 7.80 -2.38 -0.02 1.85 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.05 1.98 7.86 -2.39 -0.02 1.96 16 48 H 0.08 2.05 5.45 -2.39 -0.01 2.03 16 49 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 50 H 0.11 2.61 5.53 -2.38 -0.01 2.59 16 51 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -66.63 393.91 4.99 -61.64 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.90 Total: 24.54 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.52 Total: 0.60 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.41 Total: -107.77 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.63 4.99 -61.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029497484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.530 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds