Wall clock time and date at job start Wed Apr 1 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 H 1.08999 * 109.46971 * 305.87369 * 3 2 1 5 5 C 1.52994 * 109.47363 * 65.87728 * 3 2 1 6 6 C 1.50702 * 109.47410 * 187.02152 * 5 3 2 7 7 C 1.38236 * 119.99786 * 262.34469 * 6 5 3 8 8 C 1.38243 * 119.99895 * 179.76279 * 7 6 5 9 9 C 1.38234 * 119.99621 * 0.50768 * 8 7 6 10 10 C 1.38241 * 120.00106 * 359.74616 * 9 8 7 11 11 C 1.38228 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47247 * 185.87848 * 3 2 1 13 13 O 1.21282 * 120.00232 * 240.00074 * 12 3 2 14 14 N 1.34778 * 120.00180 * 59.99349 * 12 3 2 15 15 C 1.47624 * 120.90155 * 359.32322 * 14 12 3 16 16 C 1.53885 * 107.50307 * 132.48834 * 15 14 12 17 17 H 1.08997 * 112.09546 * 182.66375 * 16 15 14 18 18 C 1.54551 * 108.36767 * 307.00477 * 16 15 14 19 19 C 1.54278 * 104.84558 * 89.29895 * 18 16 15 20 20 C 1.54960 * 104.81308 * 359.81432 * 19 18 16 21 21 H 1.08993 * 112.26034 * 146.61235 * 20 19 18 22 22 C 1.47165 * 120.70812 * 180.02562 * 14 12 3 23 23 N 1.48304 * 107.20728 * 59.11379 * 16 15 14 24 24 C 1.36936 * 128.08038 * 106.09862 * 23 16 15 25 25 H 1.08007 * 119.99565 * 18.60452 * 24 23 16 26 26 C 1.38806 * 120.00211 * 198.60693 * 24 23 16 27 27 N 1.31618 * 120.00207 * 356.11395 * 26 24 23 28 28 Si 1.86801 * 119.99899 * 176.10933 * 26 24 23 29 29 H 1.48493 * 109.47364 * 270.00013 * 28 26 24 30 30 H 1.48501 * 109.47106 * 30.00570 * 28 26 24 31 31 H 1.48500 * 109.46942 * 149.99842 * 28 26 24 32 32 H 1.08999 * 109.46799 * 302.89320 * 1 2 3 33 33 H 1.08999 * 109.46987 * 62.88977 * 1 2 3 34 34 H 1.08997 * 109.47139 * 182.89559 * 1 2 3 35 35 H 1.09004 * 109.47221 * 239.99910 * 2 1 3 36 36 H 1.09001 * 109.47152 * 119.99693 * 2 1 3 37 37 H 1.09007 * 109.47192 * 307.01704 * 5 3 2 38 38 H 1.09002 * 109.47364 * 67.01797 * 5 3 2 39 39 H 1.07994 * 120.00191 * 359.97438 * 7 6 5 40 40 H 1.07995 * 119.99978 * 180.22827 * 8 7 6 41 41 H 1.08003 * 119.99763 * 179.72453 * 9 8 7 42 42 H 1.07996 * 119.99416 * 179.97438 * 10 9 8 43 43 H 1.07994 * 120.00321 * 179.97438 * 11 10 9 44 44 H 1.08998 * 109.37946 * 13.37504 * 15 14 12 45 45 H 1.08997 * 110.63674 * 252.31437 * 15 14 12 46 46 H 1.08997 * 110.36253 * 208.13846 * 18 16 15 47 47 H 1.08995 * 110.36495 * 330.45540 * 18 16 15 48 48 H 1.08997 * 110.36240 * 118.84559 * 19 18 16 49 49 H 1.09007 * 110.36462 * 241.04402 * 19 18 16 50 50 H 1.09000 * 109.74762 * 107.61728 * 22 14 12 51 51 H 1.08993 * 109.75285 * 346.87803 * 22 14 12 52 52 H 0.97004 * 120.00324 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8327 5 6 1.6543 2.1198 1.3165 6 6 2.0025 3.5845 1.2487 7 6 3.1840 4.0404 1.8029 8 6 3.5057 5.3832 1.7365 9 6 2.6409 6.2716 1.1251 10 6 1.4569 5.8165 0.5756 11 6 1.1379 4.4729 0.6369 12 6 3.5400 1.4450 -0.1455 13 8 4.2323 1.9398 0.7187 14 7 4.1122 0.8972 -1.2360 15 6 3.2896 0.2763 -2.2928 16 6 3.7905 0.8137 -3.6450 17 1 3.2004 0.4364 -4.4801 18 6 3.7945 2.3580 -3.5840 19 6 5.1904 2.7285 -3.0416 20 6 5.9025 1.3703 -2.8193 21 1 6.9748 1.4311 -3.0045 22 6 5.5754 0.8907 -1.3937 23 7 5.2228 0.4464 -3.7596 24 6 5.7857 -0.5232 -4.5457 25 1 5.2387 -0.9204 -5.3881 26 6 7.0593 -0.9957 -4.2600 27 7 7.7561 -0.4587 -3.2810 28 14 7.7841 -2.3936 -5.2649 29 1 7.4312 -3.6911 -4.6348 30 1 7.2359 -2.3478 -6.6442 31 1 9.2616 -2.2531 -5.3147 32 1 -0.3633 0.5581 0.8629 33 1 -0.3633 0.4683 -0.9148 34 1 -0.3633 -1.0263 0.0519 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.5826 2.0085 1.4820 38 1 2.1991 1.6545 2.1379 39 1 3.8573 3.3470 2.2847 40 1 4.4305 5.7388 2.1662 41 1 2.8902 7.3214 1.0771 42 1 0.7812 6.5107 0.0983 43 1 0.2128 4.1174 0.2079 44 1 2.2457 0.5553 -2.1494 45 1 3.3881 -0.8090 -2.2685 46 1 3.6509 2.7772 -4.5798 47 1 3.0179 2.7128 -2.9065 48 1 5.7332 3.3301 -3.7707 49 1 5.1001 3.2674 -2.0983 50 1 5.9569 -0.1200 -1.2483 51 1 6.0274 1.5641 -0.6657 52 1 8.6460 -0.7891 -3.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029497485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:08 Heat of formation + Delta-G solvation = 21.744492 kcal Electronic energy + Delta-G solvation = -32123.044894 eV Core-core repulsion = 28281.022989 eV Total energy + Delta-G solvation = -3842.021906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.39446 -39.07783 -37.79568 -35.54107 -33.74109 -32.41392 -31.84060 -30.67797 -30.53941 -29.28139 -28.46876 -26.31425 -25.12956 -23.83756 -23.42305 -22.38650 -21.58223 -21.05950 -19.66894 -19.27393 -18.48648 -17.21278 -16.75653 -16.20086 -15.52283 -15.22845 -15.00989 -14.78149 -14.58865 -14.28428 -14.07175 -13.64098 -13.38800 -13.22952 -13.02137 -12.90280 -12.86441 -12.58789 -12.52886 -12.24636 -11.83348 -11.79162 -11.63314 -11.47895 -11.44404 -11.16339 -10.96079 -10.93865 -10.86845 -10.71710 -10.65863 -10.50145 -10.28927 -10.04080 -9.77744 -9.69570 -9.50592 -9.07743 -8.75230 -8.69794 -8.44138 -7.98922 -6.79933 -5.83499 -3.23611 1.51868 1.63279 3.19594 3.34265 3.39940 3.41688 3.66799 3.97052 4.39868 4.75253 4.76996 4.90114 5.03584 5.12239 5.14106 5.18201 5.26666 5.31912 5.36213 5.44700 5.52094 5.62540 5.64619 5.68465 5.69276 5.75812 5.76980 5.85843 5.89902 5.93725 5.95742 6.03714 6.10285 6.21080 6.24519 6.29249 6.32510 6.36661 6.43904 6.56556 6.61824 6.67639 6.73087 6.74629 6.82250 6.90192 6.92979 7.02727 7.22339 7.32369 7.54862 7.72734 8.16197 8.18912 8.81338 9.05839 9.66943 10.44913 11.26785 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003605 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.617869 B = 7765.554246 C = 8457.128954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.100 4.100 4 H 0.092 0.908 5 C -0.061 4.061 6 C -0.081 4.081 7 C -0.075 4.075 8 C -0.129 4.129 9 C -0.126 4.126 10 C -0.131 4.131 11 C -0.121 4.121 12 C 0.512 3.488 13 O -0.553 6.553 14 N -0.591 5.591 15 C 0.093 3.907 16 C 0.132 3.868 17 H 0.075 0.925 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.164 3.836 21 H 0.127 0.873 22 C 0.114 3.886 23 N -0.585 5.585 24 C -0.228 4.228 25 H 0.076 0.924 26 C 0.000 4.000 27 N -0.912 5.912 28 Si 0.911 3.089 29 H -0.288 1.288 30 H -0.281 1.281 31 H -0.291 1.291 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.506 6.955 7.374 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.121 4.121 4 H 0.110 0.890 5 C -0.098 4.098 6 C -0.081 4.081 7 C -0.093 4.093 8 C -0.147 4.147 9 C -0.145 4.145 10 C -0.149 4.149 11 C -0.139 4.139 12 C 0.299 3.701 13 O -0.432 6.432 14 N -0.322 5.322 15 C -0.032 4.032 16 C 0.023 3.977 17 H 0.093 0.907 18 C -0.160 4.160 19 C -0.175 4.175 20 C 0.057 3.943 21 H 0.144 0.856 22 C -0.009 4.009 23 N -0.306 5.306 24 C -0.356 4.356 25 H 0.093 0.907 26 C -0.197 4.197 27 N -0.558 5.558 28 Si 0.741 3.259 29 H -0.215 1.215 30 H -0.207 1.207 31 H -0.217 1.217 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.086 0.914 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.877 7.043 7.741 17.381 hybrid contribution 0.407 -0.756 -0.636 1.068 sum -13.470 6.287 7.105 16.476 Atomic orbital electron populations 1.21825 0.95320 1.01761 1.01929 1.21825 0.96293 0.94838 1.03845 1.21317 0.93770 0.97672 0.99342 0.89032 1.20480 1.00987 0.91365 0.97016 1.19806 0.94964 0.95094 0.98274 1.21323 0.95484 0.94973 0.97551 1.21183 0.99352 0.93857 1.00317 1.21079 0.94899 0.99312 0.99162 1.20996 0.97376 0.95623 1.00928 1.20974 0.99465 0.93341 1.00141 1.20400 0.89848 0.78224 0.81617 1.90579 1.64746 1.46829 1.41074 1.48293 1.08473 1.56005 1.19467 1.22750 0.93233 0.97698 0.89536 1.21979 0.88830 0.93047 0.93820 0.90702 1.22441 0.97292 0.96896 0.99357 1.22701 0.96112 0.99530 0.99148 1.22147 0.99729 0.85383 0.87033 0.85600 1.22363 0.77196 1.02032 0.99329 1.45140 0.99291 1.38372 1.47783 1.18983 0.99216 1.11786 1.05596 0.90668 1.24910 0.97833 0.99038 0.97903 1.69758 1.11822 1.42619 1.31608 0.86151 0.78203 0.82283 0.79282 1.21543 1.20671 1.21701 0.92462 0.92579 0.92552 0.89873 0.91552 0.90586 0.90414 0.84807 0.86590 0.86785 0.86709 0.86681 0.91164 0.91540 0.92856 0.93199 0.93057 0.93052 0.91048 0.91376 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.76 37.16 0.36 -0.96 16 2 C -0.13 -1.48 4.91 -26.73 -0.13 -1.61 16 3 C -0.10 -1.30 1.36 -91.78 -0.12 -1.42 16 4 H 0.09 1.16 7.61 -51.93 -0.40 0.76 16 5 C -0.06 -0.74 4.46 -27.88 -0.12 -0.87 16 6 C -0.08 -1.10 4.73 -104.62 -0.49 -1.60 16 7 C -0.08 -1.12 7.98 -39.58 -0.32 -1.43 16 8 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 9 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 10 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 11 C -0.12 -1.48 9.73 -39.58 -0.39 -1.87 16 12 C 0.51 8.84 6.87 -10.98 -0.08 8.76 16 13 O -0.55 -10.84 11.84 5.56 0.07 -10.77 16 14 N -0.59 -10.92 2.24 -171.13 -0.38 -11.30 16 15 C 0.09 1.57 4.23 -2.97 -0.01 1.56 16 16 C 0.13 2.50 4.27 -65.66 -0.28 2.22 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.12 -2.14 6.18 -25.25 -0.16 -2.30 16 19 C -0.14 -2.70 6.21 -25.03 -0.16 -2.85 16 20 C 0.16 3.74 3.18 -65.41 -0.21 3.53 16 21 H 0.13 3.29 6.12 -51.93 -0.32 2.97 16 22 C 0.11 2.49 5.87 -3.19 -0.02 2.47 16 23 N -0.58 -13.69 2.81 -152.33 -0.43 -14.12 16 24 C -0.23 -5.89 10.37 -15.06 -0.16 -6.04 16 25 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 26 C 0.00 0.01 5.49 -17.43 -0.10 -0.08 16 27 N -0.91 -24.93 10.47 55.49 0.58 -24.35 16 28 Si 0.91 21.06 29.56 -169.99 -5.02 16.03 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 32 H 0.06 0.46 6.33 -51.93 -0.33 0.13 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 1.01 4.76 -51.93 -0.25 0.76 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.75 6.24 -51.92 -0.32 0.43 16 38 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 39 H 0.13 2.14 6.62 -52.49 -0.35 1.80 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.07 0.96 5.00 -51.93 -0.26 0.70 16 45 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 1.03 7.85 -51.93 -0.41 0.62 16 50 H 0.07 1.77 8.08 -51.93 -0.42 1.35 16 51 H 0.07 1.52 7.11 -51.93 -0.37 1.15 16 52 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -28.62 390.47 -11.28 -39.90 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.41 Total: 7.29 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.57 Total: -8.56 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.23 Total: -49.77 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.62 -11.28 -39.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029497485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.646 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds