Wall clock time and date at job start Wed Apr 1 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47172 * 2 1 4 4 H 1.08999 * 109.46971 * 305.87369 * 3 2 1 5 5 C 1.52994 * 109.47363 * 65.87728 * 3 2 1 6 6 C 1.50702 * 109.47410 * 187.02152 * 5 3 2 7 7 C 1.38236 * 119.99786 * 262.34469 * 6 5 3 8 8 C 1.38243 * 119.99895 * 179.76279 * 7 6 5 9 9 C 1.38234 * 119.99621 * 0.50768 * 8 7 6 10 10 C 1.38241 * 120.00106 * 359.74616 * 9 8 7 11 11 C 1.38228 * 120.00299 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47247 * 185.87848 * 3 2 1 13 13 O 1.21282 * 120.00232 * 240.00074 * 12 3 2 14 14 N 1.34778 * 120.00180 * 59.99349 * 12 3 2 15 15 C 1.47624 * 120.90155 * 359.32322 * 14 12 3 16 16 C 1.53885 * 107.50307 * 132.48834 * 15 14 12 17 17 H 1.08997 * 112.09546 * 182.66375 * 16 15 14 18 18 C 1.54551 * 108.36767 * 307.00477 * 16 15 14 19 19 C 1.54278 * 104.84558 * 89.29895 * 18 16 15 20 20 C 1.54960 * 104.81308 * 359.81432 * 19 18 16 21 21 H 1.08993 * 112.26034 * 146.61235 * 20 19 18 22 22 C 1.47165 * 120.70812 * 180.02562 * 14 12 3 23 23 N 1.48304 * 107.20728 * 59.11379 * 16 15 14 24 24 C 1.36936 * 128.08038 * 106.09862 * 23 16 15 25 25 H 1.08007 * 119.99565 * 18.60452 * 24 23 16 26 26 C 1.38806 * 120.00211 * 198.60693 * 24 23 16 27 27 N 1.31618 * 120.00207 * 356.11395 * 26 24 23 28 28 Si 1.86801 * 119.99899 * 176.10933 * 26 24 23 29 29 H 1.48493 * 109.47364 * 270.00013 * 28 26 24 30 30 H 1.48501 * 109.47106 * 30.00570 * 28 26 24 31 31 H 1.48500 * 109.46942 * 149.99842 * 28 26 24 32 32 H 1.08999 * 109.46799 * 302.89320 * 1 2 3 33 33 H 1.08999 * 109.46987 * 62.88977 * 1 2 3 34 34 H 1.08997 * 109.47139 * 182.89559 * 1 2 3 35 35 H 1.09004 * 109.47221 * 239.99910 * 2 1 3 36 36 H 1.09001 * 109.47152 * 119.99693 * 2 1 3 37 37 H 1.09007 * 109.47192 * 307.01704 * 5 3 2 38 38 H 1.09002 * 109.47364 * 67.01797 * 5 3 2 39 39 H 1.07994 * 120.00191 * 359.97438 * 7 6 5 40 40 H 1.07995 * 119.99978 * 180.22827 * 8 7 6 41 41 H 1.08003 * 119.99763 * 179.72453 * 9 8 7 42 42 H 1.07996 * 119.99416 * 179.97438 * 10 9 8 43 43 H 1.07994 * 120.00321 * 179.97438 * 11 10 9 44 44 H 1.08998 * 109.37946 * 13.37504 * 15 14 12 45 45 H 1.08997 * 110.63674 * 252.31437 * 15 14 12 46 46 H 1.08997 * 110.36253 * 208.13846 * 18 16 15 47 47 H 1.08995 * 110.36495 * 330.45540 * 18 16 15 48 48 H 1.08997 * 110.36240 * 118.84559 * 19 18 16 49 49 H 1.09007 * 110.36462 * 241.04402 * 19 18 16 50 50 H 1.09000 * 109.74762 * 107.61728 * 22 14 12 51 51 H 1.08993 * 109.75285 * 346.87803 * 22 14 12 52 52 H 0.97004 * 120.00324 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5934 1.9857 -0.8327 5 6 1.6543 2.1198 1.3165 6 6 2.0025 3.5845 1.2487 7 6 3.1840 4.0404 1.8029 8 6 3.5057 5.3832 1.7365 9 6 2.6409 6.2716 1.1251 10 6 1.4569 5.8165 0.5756 11 6 1.1379 4.4729 0.6369 12 6 3.5400 1.4450 -0.1455 13 8 4.2323 1.9398 0.7187 14 7 4.1122 0.8972 -1.2360 15 6 3.2896 0.2763 -2.2928 16 6 3.7905 0.8137 -3.6450 17 1 3.2004 0.4364 -4.4801 18 6 3.7945 2.3580 -3.5840 19 6 5.1904 2.7285 -3.0416 20 6 5.9025 1.3703 -2.8193 21 1 6.9748 1.4311 -3.0045 22 6 5.5754 0.8907 -1.3937 23 7 5.2228 0.4464 -3.7596 24 6 5.7857 -0.5232 -4.5457 25 1 5.2387 -0.9204 -5.3881 26 6 7.0593 -0.9957 -4.2600 27 7 7.7561 -0.4587 -3.2810 28 14 7.7841 -2.3936 -5.2649 29 1 7.4312 -3.6911 -4.6348 30 1 7.2359 -2.3478 -6.6442 31 1 9.2616 -2.2531 -5.3147 32 1 -0.3633 0.5581 0.8629 33 1 -0.3633 0.4683 -0.9148 34 1 -0.3633 -1.0263 0.0519 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.5826 2.0085 1.4820 38 1 2.1991 1.6545 2.1379 39 1 3.8573 3.3470 2.2847 40 1 4.4305 5.7388 2.1662 41 1 2.8902 7.3214 1.0771 42 1 0.7812 6.5107 0.0983 43 1 0.2128 4.1174 0.2079 44 1 2.2457 0.5553 -2.1494 45 1 3.3881 -0.8090 -2.2685 46 1 3.6509 2.7772 -4.5798 47 1 3.0179 2.7128 -2.9065 48 1 5.7332 3.3301 -3.7707 49 1 5.1001 3.2674 -2.0983 50 1 5.9569 -0.1200 -1.2483 51 1 6.0274 1.5641 -0.6657 52 1 8.6460 -0.7891 -3.0811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029497485.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:07 Heat of formation + Delta-G solvation = 9.431559 kcal Electronic energy + Delta-G solvation = -32123.578823 eV Core-core repulsion = 28281.022989 eV Total energy + Delta-G solvation = -3842.555834 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.78939 -40.24566 -39.15940 -36.65213 -35.35219 -34.15731 -32.85193 -32.12841 -31.62744 -31.06440 -29.46985 -27.81721 -26.35951 -25.52937 -24.91625 -23.35020 -22.59650 -22.15533 -21.22237 -20.83298 -20.00891 -18.68198 -17.80243 -17.72643 -16.96498 -16.65663 -16.38848 -16.15219 -15.72502 -15.60446 -15.32377 -14.97185 -14.67268 -14.64633 -14.47007 -14.25315 -13.98926 -13.69818 -13.50619 -13.43221 -13.39725 -13.14824 -12.91900 -12.79894 -12.77974 -12.68978 -12.60148 -12.42383 -12.04627 -11.97117 -11.81554 -11.65388 -11.63306 -11.58949 -11.40259 -11.34924 -11.06616 -10.74136 -10.40446 -9.70953 -9.62085 -9.40985 -8.64120 -7.82472 -5.23051 0.55791 0.65305 1.48591 1.49422 1.57380 1.83556 2.21540 2.51062 2.99191 3.34970 3.50193 3.61349 3.81724 3.93918 4.09838 4.12119 4.16139 4.23458 4.24594 4.30516 4.33378 4.36588 4.41697 4.44699 4.53150 4.63949 4.65950 4.71952 4.75632 4.80763 4.87614 4.88742 4.98304 4.99901 5.07495 5.08306 5.12714 5.16806 5.24162 5.26541 5.31719 5.35659 5.38064 5.41254 5.54321 5.56025 5.59051 5.68220 5.75110 5.88887 5.92698 6.26783 6.28131 6.73487 7.07498 7.40113 7.74141 8.54021 9.26426 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003605 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.617869 B = 7765.554246 C = 8457.128954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.087 4.087 4 H 0.111 0.889 5 C -0.056 4.056 6 C -0.093 4.093 7 C -0.102 4.102 8 C -0.148 4.148 9 C -0.133 4.133 10 C -0.132 4.132 11 C -0.121 4.121 12 C 0.504 3.496 13 O -0.580 6.580 14 N -0.595 5.595 15 C 0.101 3.899 16 C 0.126 3.874 17 H 0.093 0.907 18 C -0.108 4.108 19 C -0.126 4.126 20 C 0.163 3.837 21 H 0.084 0.916 22 C 0.133 3.867 23 N -0.605 5.605 24 C -0.231 4.231 25 H 0.083 0.917 26 C -0.054 4.054 27 N -0.939 5.939 28 Si 0.970 3.030 29 H -0.290 1.290 30 H -0.269 1.269 31 H -0.301 1.301 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.115 0.885 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.046 0.954 50 H 0.031 0.969 51 H 0.051 0.949 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.947 7.764 6.189 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.108 4.108 4 H 0.129 0.871 5 C -0.093 4.093 6 C -0.093 4.093 7 C -0.120 4.120 8 C -0.166 4.166 9 C -0.151 4.151 10 C -0.150 4.150 11 C -0.139 4.139 12 C 0.294 3.706 13 O -0.461 6.461 14 N -0.326 5.326 15 C -0.023 4.023 16 C 0.019 3.981 17 H 0.111 0.889 18 C -0.147 4.147 19 C -0.166 4.166 20 C 0.055 3.945 21 H 0.102 0.898 22 C 0.008 3.992 23 N -0.326 5.326 24 C -0.360 4.360 25 H 0.101 0.899 26 C -0.248 4.248 27 N -0.587 5.587 28 Si 0.799 3.201 29 H -0.218 1.218 30 H -0.193 1.193 31 H -0.228 1.228 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.049 0.951 51 H 0.069 0.931 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.375 7.858 6.552 21.031 hybrid contribution 1.803 -0.946 -0.205 2.046 sum -16.572 6.912 6.347 19.044 Atomic orbital electron populations 1.21802 0.92545 1.02743 1.03173 1.21807 0.98554 0.93141 1.03005 1.21334 0.89709 0.99250 1.00518 0.87110 1.20492 1.02645 0.90388 0.95810 1.19991 0.94733 0.96096 0.98520 1.21269 0.96373 0.95225 0.99161 1.21350 1.00151 0.93898 1.01179 1.21381 0.94959 1.00145 0.98598 1.21410 0.97299 0.96221 1.00065 1.21315 1.00031 0.93217 0.99308 1.21346 0.91954 0.76891 0.80420 1.90596 1.66030 1.47604 1.41838 1.48302 1.06847 1.56766 1.20724 1.22766 0.94979 0.96794 0.87805 1.22276 0.86450 0.93944 0.95460 0.88858 1.22371 0.95971 0.95823 1.00538 1.22553 0.97523 0.97478 0.99021 1.21904 0.97935 0.87261 0.87387 0.89806 1.21789 0.79915 0.98972 0.98514 1.45312 1.01658 1.38196 1.47481 1.19324 0.99223 1.11574 1.05836 0.89946 1.25611 0.98662 1.01302 0.99269 1.69987 1.11569 1.43798 1.33326 0.85207 0.76724 0.79562 0.78564 1.21765 1.19331 1.22793 0.91371 0.91139 0.91819 0.90641 0.92653 0.87236 0.92295 0.87513 0.86440 0.84730 0.83818 0.83626 0.86726 0.92874 0.91450 0.90863 0.93295 0.93486 0.95104 0.93071 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.76 71.98 0.70 -1.16 16 2 C -0.13 -2.50 4.91 30.59 0.15 -2.35 16 3 C -0.09 -2.02 1.36 -11.54 -0.02 -2.03 16 4 H 0.11 2.21 7.61 -2.39 -0.02 2.20 16 5 C -0.06 -1.23 4.46 29.85 0.13 -1.10 16 6 C -0.09 -2.36 4.73 -19.86 -0.09 -2.45 16 7 C -0.10 -3.08 7.98 22.27 0.18 -2.91 16 8 C -0.15 -4.03 10.05 22.27 0.22 -3.81 16 9 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 10 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 11 C -0.12 -2.49 9.73 22.27 0.22 -2.27 16 12 C 0.50 17.17 6.87 87.66 0.60 17.78 16 13 O -0.58 -23.55 11.84 -3.04 -0.04 -23.59 16 14 N -0.59 -21.91 2.24 -813.73 -1.82 -23.73 16 15 C 0.10 3.19 4.23 86.46 0.37 3.55 16 16 C 0.13 4.48 4.27 45.47 0.19 4.67 16 17 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 18 C -0.11 -3.52 6.18 31.56 0.20 -3.33 16 19 C -0.13 -5.00 6.21 31.70 0.20 -4.80 16 20 C 0.16 7.70 3.18 45.63 0.15 7.84 16 21 H 0.08 4.69 6.12 -2.39 -0.01 4.67 16 22 C 0.13 6.14 5.87 86.57 0.51 6.64 16 23 N -0.60 -28.46 2.81 -635.85 -1.79 -30.24 16 24 C -0.23 -12.01 10.37 84.03 0.87 -11.13 16 25 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 26 C -0.05 -2.94 5.49 84.86 0.47 -2.47 16 27 N -0.94 -54.11 10.47 21.65 0.23 -53.89 16 28 Si 0.97 44.26 29.56 68.60 2.03 46.29 16 29 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 30 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 31 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 32 H 0.07 0.74 6.33 -2.39 -0.02 0.73 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.61 4.76 -2.38 -0.01 1.60 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.11 1.68 6.24 -2.38 -0.01 1.66 16 38 H 0.06 1.52 7.77 -2.39 -0.02 1.50 16 39 H 0.11 3.70 6.62 -2.91 -0.02 3.69 16 40 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 44 H 0.11 2.63 5.00 -2.39 -0.01 2.62 16 45 H 0.05 1.85 7.92 -2.39 -0.02 1.83 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.05 1.88 7.85 -2.38 -0.02 1.86 16 50 H 0.03 1.64 8.08 -2.39 -0.02 1.62 16 51 H 0.05 2.47 7.11 -2.39 -0.02 2.45 16 52 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.73 390.47 5.00 -61.73 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.90 Total: 27.99 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.49 Total: -4.56 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -3.38 Total: -107.86 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.73 5.00 -61.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029497485.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.158 kcal (2) G-P(sol) polarization free energy of solvation -66.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds