Wall clock time and date at job start Wed Apr 1 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.52995 * 109.47485 * 120.00281 * 2 1 3 5 5 C 1.50702 * 109.46668 * 300.00138 * 4 2 1 6 6 C 1.38230 * 120.00223 * 90.00372 * 5 4 2 7 7 C 1.38238 * 120.00015 * 180.02562 * 6 5 4 8 8 C 1.38233 * 120.00036 * 359.97438 * 7 6 5 9 9 C 1.38233 * 119.99809 * 0.26305 * 8 7 6 10 10 C 1.38233 * 119.99829 * 270.01568 * 5 4 2 11 11 C 1.50704 * 109.47225 * 240.00435 * 2 1 3 12 12 O 1.21285 * 119.99985 * 238.37791 * 11 2 1 13 13 N 1.34776 * 120.00349 * 58.36953 * 11 2 1 14 14 C 1.47167 * 120.70572 * 355.18880 * 13 11 2 15 15 C 1.54318 * 107.80345 * 132.67899 * 14 13 11 16 16 H 1.08999 * 112.53212 * 182.37107 * 15 14 13 17 17 C 1.54542 * 107.98271 * 306.73697 * 15 14 13 18 18 C 1.55852 * 105.00261 * 89.00978 * 17 15 14 19 19 C 1.54546 * 104.09278 * 0.02562 * 18 17 15 20 20 H 1.09005 * 112.17867 * 146.81725 * 19 18 17 21 21 C 1.47162 * 120.70941 * 175.45606 * 13 11 2 22 22 N 1.48310 * 104.91173 * 24.75567 * 19 18 17 23 23 C 1.36936 * 128.07750 * 138.82748 * 22 19 18 24 24 H 1.07997 * 119.99996 * 351.49256 * 23 22 19 25 25 C 1.38816 * 119.99646 * 171.49451 * 23 22 19 26 26 N 1.31621 * 120.00335 * 350.32745 * 25 23 22 27 27 Si 1.86794 * 119.99653 * 170.32316 * 25 23 22 28 28 H 1.48508 * 109.47204 * 60.00287 * 27 25 23 29 29 H 1.48507 * 109.47255 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47202 * 300.00155 * 27 25 23 31 31 H 1.08992 * 109.46848 * 308.93359 * 1 2 3 32 32 H 1.08997 * 109.46922 * 68.93374 * 1 2 3 33 33 H 1.08997 * 109.46814 * 188.93043 * 1 2 3 34 34 H 1.08997 * 109.47229 * 180.24084 * 3 2 1 35 35 H 1.08999 * 109.46850 * 300.24322 * 3 2 1 36 36 H 1.08998 * 109.46760 * 60.24027 * 3 2 1 37 37 H 1.08994 * 109.47638 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47393 * 59.99776 * 4 2 1 39 39 H 1.08000 * 120.00016 * 359.97438 * 6 5 4 40 40 H 1.08005 * 119.99636 * 179.97438 * 7 6 5 41 41 H 1.07998 * 119.99911 * 179.97438 * 8 7 6 42 42 H 1.08001 * 119.99766 * 179.71938 * 9 8 7 43 43 H 1.08001 * 120.00496 * 0.02562 * 10 5 4 44 44 H 1.09002 * 109.74330 * 252.38587 * 14 13 11 45 45 H 1.08995 * 109.75388 * 13.11222 * 14 13 11 46 46 H 1.09003 * 110.36408 * 207.86166 * 17 15 14 47 47 H 1.09000 * 110.36427 * 330.05924 * 17 15 14 48 48 H 1.09004 * 110.90049 * 241.33264 * 18 17 15 49 49 H 1.08999 * 110.55173 * 118.52315 * 18 17 15 50 50 H 1.08994 * 109.75378 * 346.88539 * 21 13 11 51 51 H 1.09000 * 109.74836 * 107.56953 * 21 13 11 52 52 H 0.96993 * 119.99991 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5377 -0.0109 2.4796 6 6 0.3300 -0.3763 3.0440 7 6 -0.1311 0.2757 4.1724 8 6 0.6159 1.2928 4.7367 9 6 1.8213 1.6615 4.1694 10 6 2.2846 1.0064 3.0437 11 6 2.0324 -0.7103 -1.2305 12 8 2.7538 -1.6790 -1.1196 13 7 1.6800 -0.2693 -2.4544 14 6 0.7225 0.8378 -2.6073 15 6 1.3130 1.8348 -3.6265 16 1 0.6806 2.7113 -3.7678 17 6 2.7360 2.2116 -3.1559 18 6 3.6709 1.1476 -3.8063 19 6 2.7087 0.2386 -4.6040 20 1 3.1680 -0.1490 -5.5134 21 6 2.2399 -0.8885 -3.6663 22 7 1.5290 1.0903 -4.8910 23 6 0.8076 1.1703 -6.0521 24 1 1.1597 0.6701 -6.9421 25 6 -0.3763 1.8945 -6.0852 26 7 -0.9048 2.3432 -4.9664 27 14 -1.2192 2.2321 -7.7175 28 1 -1.5679 0.9446 -8.3703 29 1 -2.4563 3.0194 -7.4824 30 1 -0.3034 3.0013 -8.5978 31 1 -0.3633 0.6458 0.7993 32 1 -0.3633 0.3694 -0.9590 33 1 -0.3633 -1.0152 0.1595 34 1 3.1300 1.4425 -0.0043 35 1 1.6731 1.9576 -0.8878 36 1 1.6802 1.9550 0.8921 37 1 3.1300 -0.7209 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 -0.2539 -1.1706 2.6029 40 1 -1.0750 -0.0095 4.6131 41 1 0.2555 1.8025 5.6180 42 1 2.4028 2.4592 4.6076 43 1 3.2280 1.2923 2.6025 44 1 -0.2297 0.4533 -2.9726 45 1 0.5764 1.3336 -1.6477 46 1 2.9990 3.2101 -3.5051 47 1 2.8019 2.1612 -2.0691 48 1 4.1931 0.5705 -3.0432 49 1 4.3852 1.6249 -4.4771 50 1 3.0860 -1.5215 -3.3994 51 1 1.4747 -1.4861 -4.1617 52 1 -1.7317 2.8495 -4.9895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029544034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:56 Heat of formation + Delta-G solvation = 40.370709 kcal Electronic energy + Delta-G solvation = -32098.218265 eV Core-core repulsion = 28257.004053 eV Total energy + Delta-G solvation = -3841.214212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.76717 -39.37128 -37.90715 -35.72913 -33.76865 -32.46927 -31.47852 -31.01824 -30.19890 -29.25674 -27.27423 -26.71104 -26.28523 -24.09647 -23.79524 -22.52832 -22.32853 -20.87743 -19.73482 -19.04268 -18.57593 -16.81488 -16.66689 -15.99097 -15.58489 -15.39460 -15.27597 -14.87880 -14.67803 -14.19719 -14.03542 -13.75778 -13.48817 -13.32847 -13.12063 -13.05331 -12.79726 -12.68283 -12.53203 -12.07039 -11.82570 -11.74327 -11.67522 -11.58627 -11.52250 -11.14298 -10.99377 -10.97197 -10.92961 -10.81386 -10.71427 -10.41963 -10.26400 -10.00687 -9.79949 -9.55355 -9.48826 -9.17639 -8.95429 -8.76619 -8.66284 -8.03047 -6.89594 -5.84791 -3.19127 1.29851 1.33962 3.13737 3.34672 3.40123 3.40440 3.56279 3.78483 4.39781 4.64985 4.78182 4.89815 4.92330 5.01058 5.06070 5.13926 5.19170 5.31203 5.38467 5.43516 5.47764 5.64725 5.70579 5.72964 5.76915 5.78643 5.82140 5.88150 5.89927 5.93858 6.00029 6.06198 6.09146 6.15358 6.19130 6.25348 6.34067 6.39693 6.41599 6.42632 6.44320 6.51565 6.63085 6.64477 6.66318 6.76417 6.87594 6.95090 6.98409 7.25330 7.46829 7.64549 8.09966 8.15002 8.72212 9.04348 9.66119 10.40803 11.26084 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003251 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.066835 B = 8610.699377 C = 9252.367821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.068 4.068 3 C -0.162 4.162 4 C -0.056 4.056 5 C -0.069 4.069 6 C -0.114 4.114 7 C -0.121 4.121 8 C -0.129 4.129 9 C -0.121 4.121 10 C -0.115 4.115 11 C 0.518 3.482 12 O -0.566 6.566 13 N -0.586 5.586 14 C 0.083 3.917 15 C 0.159 3.841 16 H 0.133 0.867 17 C -0.146 4.146 18 C -0.124 4.124 19 C 0.134 3.866 20 H 0.076 0.924 21 C 0.102 3.898 22 N -0.585 5.585 23 C -0.220 4.220 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.919 5.919 27 Si 0.913 3.087 28 H -0.286 1.286 29 H -0.290 1.290 30 H -0.286 1.286 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -0.685 15.749 16.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.071 4.071 3 C -0.218 4.218 4 C -0.094 4.094 5 C -0.069 4.069 6 C -0.132 4.132 7 C -0.139 4.139 8 C -0.147 4.147 9 C -0.139 4.139 10 C -0.133 4.133 11 C 0.305 3.695 12 O -0.447 6.447 13 N -0.317 5.317 14 C -0.040 4.040 15 C 0.051 3.949 16 H 0.150 0.850 17 C -0.185 4.185 18 C -0.163 4.163 19 C 0.026 3.974 20 H 0.094 0.906 21 C -0.023 4.023 22 N -0.306 5.306 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.566 5.566 27 Si 0.743 3.257 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.213 1.213 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.785 -1.083 15.618 16.107 hybrid contribution -0.578 0.109 -0.819 1.009 sum 3.207 -0.973 14.799 15.174 Atomic orbital electron populations 1.22398 0.92793 1.02487 1.04451 1.20554 0.97323 0.96566 0.92694 1.22441 1.01330 0.94153 1.03903 1.20440 1.01219 0.98361 0.89384 1.19899 0.94619 0.96154 0.96196 1.21103 0.95858 1.00243 0.96010 1.21124 0.99745 0.96651 0.96358 1.21097 0.95396 0.97996 1.00220 1.21120 0.96510 0.99892 0.96377 1.21097 1.00033 0.96071 0.96064 1.20397 0.80604 0.83921 0.84559 1.90611 1.39492 1.27859 1.86718 1.48123 1.43806 1.34977 1.04792 1.23248 0.92225 0.88122 1.00442 1.22294 0.92715 0.95744 0.84115 0.84988 1.23148 0.98269 0.97879 0.99235 1.22731 0.97393 0.97612 0.98560 1.21947 0.89552 0.90978 0.94962 0.90637 1.22350 0.98191 0.96178 0.85543 1.45187 1.30753 1.43820 1.10804 1.19015 1.01174 1.27838 0.86774 0.90469 1.24716 0.96782 1.01558 0.97202 1.69710 1.20765 1.41825 1.24306 0.86182 0.78624 0.77934 0.82912 1.21223 1.21588 1.21269 0.91516 0.89576 0.92566 0.92371 0.89461 0.91369 0.90427 0.90518 0.86142 0.86341 0.86489 0.86330 0.86104 0.90602 0.89499 0.92886 0.92011 0.92728 0.92804 0.90869 0.92224 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 7.16 37.16 0.27 -1.95 16 2 C -0.07 -0.96 0.52 -155.66 -0.08 -1.04 16 3 C -0.16 -2.11 6.51 37.16 0.24 -1.86 16 4 C -0.06 -0.74 3.74 -27.88 -0.10 -0.84 16 5 C -0.07 -0.79 4.03 -104.63 -0.42 -1.21 16 6 C -0.11 -1.23 8.12 -39.58 -0.32 -1.56 16 7 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 8 C -0.13 -1.21 10.05 -39.59 -0.40 -1.61 16 9 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 10 C -0.11 -1.22 7.88 -39.58 -0.31 -1.53 16 11 C 0.52 9.17 6.49 -10.98 -0.07 9.10 16 12 O -0.57 -11.52 15.48 5.55 0.09 -11.43 16 13 N -0.59 -10.84 2.24 -171.24 -0.38 -11.22 16 14 C 0.08 1.58 3.80 -2.99 -0.01 1.56 16 15 C 0.16 3.35 3.24 -65.43 -0.21 3.14 16 16 H 0.13 3.19 5.91 -51.93 -0.31 2.88 16 17 C -0.15 -2.66 6.15 -24.40 -0.15 -2.81 16 18 C -0.12 -2.21 6.31 -24.40 -0.15 -2.37 16 19 C 0.13 2.66 4.27 -65.64 -0.28 2.38 16 20 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 21 C 0.10 1.97 5.87 -3.20 -0.02 1.95 16 22 N -0.58 -13.55 2.82 -152.31 -0.43 -13.98 16 23 C -0.22 -5.66 10.39 -15.06 -0.16 -5.82 16 24 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 25 C -0.01 -0.17 5.44 -17.43 -0.09 -0.26 16 26 N -0.92 -24.15 10.51 55.49 0.58 -23.57 16 27 Si 0.91 20.91 29.56 -169.99 -5.03 15.88 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.07 0.82 6.80 -51.93 -0.35 0.46 16 32 H 0.09 1.29 4.30 -51.93 -0.22 1.07 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 35 H 0.09 1.24 3.19 -51.93 -0.17 1.07 16 36 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 37 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 38 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 39 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.18 8.02 -52.49 -0.42 0.76 16 44 H 0.08 1.68 7.96 -51.93 -0.41 1.27 16 45 H 0.09 1.45 2.72 -51.93 -0.14 1.31 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.00 4.54 -51.93 -0.24 0.77 16 48 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 1.38 7.15 -51.93 -0.37 1.01 16 51 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 52 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -28.19 379.79 -10.48 -38.67 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.96 Total: 7.79 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.07 Total: -7.86 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.23 Total: -48.77 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.19 -10.48 -38.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029544034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.040 kcal (2) G-P(sol) polarization free energy of solvation -28.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds