Wall clock time and date at job start Wed Apr 1 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.52995 * 109.47485 * 120.00281 * 2 1 3 5 5 C 1.50702 * 109.46668 * 300.00138 * 4 2 1 6 6 C 1.38230 * 120.00223 * 90.00372 * 5 4 2 7 7 C 1.38238 * 120.00015 * 180.02562 * 6 5 4 8 8 C 1.38233 * 120.00036 * 359.97438 * 7 6 5 9 9 C 1.38233 * 119.99809 * 0.26305 * 8 7 6 10 10 C 1.38233 * 119.99829 * 270.01568 * 5 4 2 11 11 C 1.50704 * 109.47225 * 240.00435 * 2 1 3 12 12 O 1.21285 * 119.99985 * 238.37791 * 11 2 1 13 13 N 1.34776 * 120.00349 * 58.36953 * 11 2 1 14 14 C 1.47167 * 120.70572 * 355.18880 * 13 11 2 15 15 C 1.54318 * 107.80345 * 132.67899 * 14 13 11 16 16 H 1.08999 * 112.53212 * 182.37107 * 15 14 13 17 17 C 1.54542 * 107.98271 * 306.73697 * 15 14 13 18 18 C 1.55852 * 105.00261 * 89.00978 * 17 15 14 19 19 C 1.54546 * 104.09278 * 0.02562 * 18 17 15 20 20 H 1.09005 * 112.17867 * 146.81725 * 19 18 17 21 21 C 1.47162 * 120.70941 * 175.45606 * 13 11 2 22 22 N 1.48310 * 104.91173 * 24.75567 * 19 18 17 23 23 C 1.36936 * 128.07750 * 138.82748 * 22 19 18 24 24 H 1.07997 * 119.99996 * 351.49256 * 23 22 19 25 25 C 1.38816 * 119.99646 * 171.49451 * 23 22 19 26 26 N 1.31621 * 120.00335 * 350.32745 * 25 23 22 27 27 Si 1.86794 * 119.99653 * 170.32316 * 25 23 22 28 28 H 1.48508 * 109.47204 * 60.00287 * 27 25 23 29 29 H 1.48507 * 109.47255 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47202 * 300.00155 * 27 25 23 31 31 H 1.08992 * 109.46848 * 308.93359 * 1 2 3 32 32 H 1.08997 * 109.46922 * 68.93374 * 1 2 3 33 33 H 1.08997 * 109.46814 * 188.93043 * 1 2 3 34 34 H 1.08997 * 109.47229 * 180.24084 * 3 2 1 35 35 H 1.08999 * 109.46850 * 300.24322 * 3 2 1 36 36 H 1.08998 * 109.46760 * 60.24027 * 3 2 1 37 37 H 1.08994 * 109.47638 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.47393 * 59.99776 * 4 2 1 39 39 H 1.08000 * 120.00016 * 359.97438 * 6 5 4 40 40 H 1.08005 * 119.99636 * 179.97438 * 7 6 5 41 41 H 1.07998 * 119.99911 * 179.97438 * 8 7 6 42 42 H 1.08001 * 119.99766 * 179.71938 * 9 8 7 43 43 H 1.08001 * 120.00496 * 0.02562 * 10 5 4 44 44 H 1.09002 * 109.74330 * 252.38587 * 14 13 11 45 45 H 1.08995 * 109.75388 * 13.11222 * 14 13 11 46 46 H 1.09003 * 110.36408 * 207.86166 * 17 15 14 47 47 H 1.09000 * 110.36427 * 330.05924 * 17 15 14 48 48 H 1.09004 * 110.90049 * 241.33264 * 18 17 15 49 49 H 1.08999 * 110.55173 * 118.52315 * 18 17 15 50 50 H 1.08994 * 109.75378 * 346.88539 * 21 13 11 51 51 H 1.09000 * 109.74836 * 107.56953 * 21 13 11 52 52 H 0.96993 * 119.99991 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5377 -0.0109 2.4796 6 6 0.3300 -0.3763 3.0440 7 6 -0.1311 0.2757 4.1724 8 6 0.6159 1.2928 4.7367 9 6 1.8213 1.6615 4.1694 10 6 2.2846 1.0064 3.0437 11 6 2.0324 -0.7103 -1.2305 12 8 2.7538 -1.6790 -1.1196 13 7 1.6800 -0.2693 -2.4544 14 6 0.7225 0.8378 -2.6073 15 6 1.3130 1.8348 -3.6265 16 1 0.6806 2.7113 -3.7678 17 6 2.7360 2.2116 -3.1559 18 6 3.6709 1.1476 -3.8063 19 6 2.7087 0.2386 -4.6040 20 1 3.1680 -0.1490 -5.5134 21 6 2.2399 -0.8885 -3.6663 22 7 1.5290 1.0903 -4.8910 23 6 0.8076 1.1703 -6.0521 24 1 1.1597 0.6701 -6.9421 25 6 -0.3763 1.8945 -6.0852 26 7 -0.9048 2.3432 -4.9664 27 14 -1.2192 2.2321 -7.7175 28 1 -1.5679 0.9446 -8.3703 29 1 -2.4563 3.0194 -7.4824 30 1 -0.3034 3.0013 -8.5978 31 1 -0.3633 0.6458 0.7993 32 1 -0.3633 0.3694 -0.9590 33 1 -0.3633 -1.0152 0.1595 34 1 3.1300 1.4425 -0.0043 35 1 1.6731 1.9576 -0.8878 36 1 1.6802 1.9550 0.8921 37 1 3.1300 -0.7209 1.2494 38 1 1.6768 -1.7489 1.2492 39 1 -0.2539 -1.1706 2.6029 40 1 -1.0750 -0.0095 4.6131 41 1 0.2555 1.8025 5.6180 42 1 2.4028 2.4592 4.6076 43 1 3.2280 1.2923 2.6025 44 1 -0.2297 0.4533 -2.9726 45 1 0.5764 1.3336 -1.6477 46 1 2.9990 3.2101 -3.5051 47 1 2.8019 2.1612 -2.0691 48 1 4.1931 0.5705 -3.0432 49 1 4.3852 1.6249 -4.4771 50 1 3.0860 -1.5215 -3.3994 51 1 1.4747 -1.4861 -4.1617 52 1 -1.7317 2.8495 -4.9895 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029544034.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:55 Heat of formation + Delta-G solvation = 28.502216 kcal Electronic energy + Delta-G solvation = -32098.732921 eV Core-core repulsion = 28257.004053 eV Total energy + Delta-G solvation = -3841.728869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15216 -40.37456 -39.32978 -36.94863 -35.38510 -34.18773 -32.70017 -31.76174 -31.52236 -31.01407 -28.40466 -27.86361 -27.70293 -25.80404 -25.36503 -23.54293 -23.27528 -21.95850 -21.30942 -20.56551 -20.06419 -18.42184 -17.56124 -17.38880 -17.02502 -16.77436 -16.44855 -16.19942 -15.83531 -15.57238 -15.41486 -15.26209 -14.76057 -14.64825 -14.38024 -14.23058 -13.98701 -13.73744 -13.62804 -13.55776 -13.28208 -13.17336 -13.11338 -12.84159 -12.73628 -12.67349 -12.56397 -12.55907 -12.07356 -11.91007 -11.84031 -11.78809 -11.70410 -11.64995 -11.39443 -11.22083 -11.02112 -10.84410 -10.35077 -9.70236 -9.68022 -9.49705 -8.71222 -7.80334 -5.14962 0.52321 0.59463 1.50610 1.51827 1.57486 1.69497 2.14339 2.52517 2.96491 3.35595 3.41087 3.54442 3.83113 3.84151 4.06575 4.09377 4.13585 4.15524 4.22360 4.23171 4.28147 4.33578 4.39447 4.41606 4.54994 4.56687 4.68988 4.72249 4.74685 4.77049 4.80468 4.86133 4.93929 4.96583 4.99439 5.02615 5.03572 5.09035 5.13102 5.23782 5.26177 5.30700 5.33969 5.36375 5.49100 5.55104 5.65179 5.67258 5.72024 5.83013 5.87076 6.21348 6.28768 6.62496 7.11484 7.24420 7.75396 8.52764 9.28149 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.003251 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.066835 B = 8610.699377 C = 9252.367821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.155 4.155 4 C -0.047 4.047 5 C -0.081 4.081 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.131 4.131 9 C -0.125 4.125 10 C -0.123 4.123 11 C 0.516 3.484 12 O -0.591 6.591 13 N -0.587 5.587 14 C 0.102 3.898 15 C 0.154 3.846 16 H 0.103 0.897 17 C -0.138 4.138 18 C -0.113 4.113 19 C 0.130 3.870 20 H 0.079 0.921 21 C 0.107 3.893 22 N -0.605 5.605 23 C -0.233 4.233 24 H 0.074 0.926 25 C -0.052 4.052 26 N -0.933 5.933 27 Si 0.969 3.031 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.284 1.284 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.039 0.961 45 H 0.114 0.886 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.080 0.920 51 H 0.038 0.962 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 0.220 17.780 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.065 4.065 3 C -0.212 4.212 4 C -0.085 4.085 5 C -0.081 4.081 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.148 4.148 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.306 3.694 12 O -0.473 6.473 13 N -0.318 5.318 14 C -0.021 4.021 15 C 0.046 3.954 16 H 0.120 0.880 17 C -0.177 4.177 18 C -0.152 4.152 19 C 0.022 3.978 20 H 0.097 0.903 21 C -0.018 4.018 22 N -0.326 5.326 23 C -0.362 4.362 24 H 0.092 0.908 25 C -0.246 4.246 26 N -0.582 5.582 27 Si 0.799 3.201 28 H -0.212 1.212 29 H -0.220 1.220 30 H -0.211 1.211 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.057 0.943 45 H 0.131 0.869 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.098 0.902 51 H 0.057 0.943 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.424 -0.184 17.662 18.208 hybrid contribution -0.764 -0.234 -1.394 1.607 sum 3.660 -0.418 16.268 16.679 Atomic orbital electron populations 1.22329 0.92272 1.02894 1.04005 1.20563 0.97566 0.97057 0.91306 1.22379 1.01708 0.92995 1.04103 1.20299 1.00703 0.97821 0.89676 1.19765 0.95365 0.96971 0.96008 1.21220 0.95832 1.00636 0.96660 1.21391 1.00554 0.96546 0.95942 1.21443 0.95121 0.97603 1.00677 1.21412 0.96799 1.00135 0.95912 1.21241 1.00285 0.95960 0.96577 1.21055 0.79803 0.83522 0.85038 1.90597 1.40613 1.29008 1.87061 1.48126 1.43752 1.34863 1.05023 1.22967 0.90398 0.87703 1.01077 1.22227 0.94097 0.95022 0.84006 0.87990 1.23075 0.96100 0.97945 1.00562 1.22643 0.96903 0.97065 0.98608 1.22104 0.89021 0.91107 0.95573 0.90281 1.22194 0.97738 0.95965 0.85927 1.45372 1.31496 1.44895 1.10863 1.19255 1.01557 1.27578 0.87793 0.90780 1.25340 0.97545 1.02032 0.99668 1.69883 1.20673 1.42234 1.25374 0.85307 0.77422 0.77427 0.79981 1.21197 1.22002 1.21060 0.89756 0.91315 0.92515 0.91763 0.90657 0.89537 0.91068 0.91710 0.86032 0.84577 0.84264 0.84274 0.85424 0.94304 0.86856 0.92733 0.89849 0.91760 0.91746 0.90199 0.94308 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 7.16 71.98 0.52 -3.59 16 2 C -0.06 -1.67 0.52 -52.93 -0.03 -1.70 16 3 C -0.16 -3.70 6.51 71.98 0.47 -3.23 16 4 C -0.05 -1.18 3.74 29.85 0.11 -1.07 16 5 C -0.08 -1.72 4.03 -19.87 -0.08 -1.80 16 6 C -0.13 -2.48 8.12 22.27 0.18 -2.30 16 7 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 8 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 9 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 10 C -0.12 -2.30 7.88 22.27 0.18 -2.13 16 11 C 0.52 18.00 6.49 87.66 0.57 18.57 16 12 O -0.59 -23.76 15.48 -3.05 -0.05 -23.81 16 13 N -0.59 -21.71 2.24 -814.06 -1.83 -23.54 16 14 C 0.10 3.92 3.80 86.70 0.33 4.25 16 15 C 0.15 6.54 3.24 45.61 0.15 6.69 16 16 H 0.10 5.03 5.91 -2.39 -0.01 5.02 16 17 C -0.14 -4.84 6.15 32.11 0.20 -4.64 16 18 C -0.11 -3.88 6.31 32.11 0.20 -3.67 16 19 C 0.13 5.12 4.27 45.48 0.19 5.32 16 20 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 21 C 0.11 4.17 5.87 86.56 0.51 4.68 16 22 N -0.60 -28.44 2.82 -635.80 -1.79 -30.23 16 23 C -0.23 -12.21 10.39 84.03 0.87 -11.34 16 24 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 25 C -0.05 -2.73 5.44 84.86 0.46 -2.27 16 26 N -0.93 -50.26 10.51 21.65 0.23 -50.03 16 27 Si 0.97 43.63 29.56 68.60 2.03 45.66 16 28 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 29 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 30 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 31 H 0.08 1.91 6.80 -2.39 -0.02 1.89 16 32 H 0.07 2.04 4.30 -2.39 -0.01 2.03 16 33 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 34 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 35 H 0.08 1.98 3.19 -2.39 -0.01 1.97 16 36 H 0.09 1.78 6.16 -2.39 -0.01 1.77 16 37 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 38 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 39 H 0.12 2.29 8.03 -2.91 -0.02 2.27 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.13 2.16 8.02 -2.91 -0.02 2.13 16 44 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 45 H 0.11 3.75 2.72 -2.39 -0.01 3.74 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 2.54 4.54 -2.39 -0.01 2.53 16 48 H 0.06 2.09 7.84 -2.38 -0.02 2.07 16 49 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.08 3.01 7.15 -2.39 -0.02 2.99 16 51 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -60.96 379.79 5.01 -55.95 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.92 Total: 29.74 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.50 Total: -3.73 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.39 Total: -103.80 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -60.96 5.01 -55.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029544034.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.457 kcal (2) G-P(sol) polarization free energy of solvation -60.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds