Wall clock time and date at job start Wed Apr 1 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99885 * 269.72552 * 5 4 3 7 7 C 1.38247 * 119.99879 * 179.78507 * 6 5 4 8 8 C 1.38228 * 119.99534 * 0.44161 * 7 6 5 9 9 C 1.50703 * 119.99482 * 179.83404 * 8 7 6 10 10 C 1.50698 * 109.47367 * 269.97657 * 9 8 7 11 11 O 1.21287 * 119.99519 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.47859 * 126.94461 * 0.02562 * 12 10 9 14 14 C 1.56013 * 105.10607 * 181.97680 * 13 12 10 15 15 H 1.08998 * 116.25021 * 158.83369 * 14 13 12 16 16 C 1.57083 * 99.60733 * 32.80882 * 14 13 12 17 17 C 1.49290 * 126.94056 * 179.70736 * 12 10 9 18 18 H 1.08995 * 116.15606 * 16.73116 * 17 12 10 19 19 C 1.56023 * 104.09114 * 246.72001 * 17 12 10 20 20 N 1.47362 * 105.14875 * 288.60826 * 19 17 12 21 21 C 1.36935 * 126.79169 * 182.05593 * 20 19 17 22 22 H 1.08006 * 120.00072 * 180.28752 * 21 20 19 23 23 C 1.38817 * 119.99857 * 0.29616 * 21 20 19 24 24 N 1.31617 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47559 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47428 * 119.99757 * 25 23 21 28 28 H 1.48507 * 109.46892 * 239.99413 * 25 23 21 29 29 C 1.38231 * 120.00549 * 359.80991 * 8 7 6 30 30 C 1.38234 * 120.00037 * 359.97438 * 29 8 7 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 38 38 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 39 39 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 40 40 H 1.07999 * 120.00300 * 359.97438 * 6 5 4 41 41 H 1.07996 * 119.99572 * 180.27132 * 7 6 5 42 42 H 1.09003 * 109.47183 * 29.97799 * 9 8 7 43 43 H 1.09003 * 109.47354 * 149.97455 * 9 8 7 44 44 H 1.08999 * 110.31683 * 300.88594 * 13 12 10 45 45 H 1.09005 * 110.31839 * 63.06946 * 13 12 10 46 46 H 1.09003 * 112.37189 * 64.26663 * 16 14 13 47 47 H 1.08999 * 112.37362 * 191.62504 * 16 14 13 48 48 H 1.08995 * 110.31505 * 47.67986 * 19 17 12 49 49 H 1.08996 * 110.31231 * 169.86555 * 19 17 12 50 50 H 0.96998 * 119.99778 * 179.97438 * 24 23 21 51 51 H 1.08004 * 119.99967 * 180.02562 * 29 8 7 52 52 H 1.07995 * 119.99943 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8632 -0.0013 6 6 4.3077 3.5125 -1.1987 7 6 4.7644 4.8174 -1.1993 8 6 4.9943 5.4696 -0.0025 9 6 5.4957 6.8908 -0.0031 10 6 7.0027 6.8919 -0.0026 11 8 7.6098 5.8419 -0.0013 12 7 7.6758 8.0596 -0.0026 13 6 7.0958 9.4197 -0.0024 14 6 8.3210 10.3841 -0.0544 15 1 8.1248 11.3939 -0.4149 16 6 9.3051 9.5118 -0.9136 17 6 9.1576 8.2410 0.0040 18 1 9.7497 7.3686 -0.2725 19 6 9.4554 8.8845 1.3938 20 7 8.9382 10.2612 1.2994 21 6 9.0062 11.2307 2.2640 22 1 8.5842 12.2075 2.0786 23 6 9.6175 10.9582 3.4802 24 7 10.1314 9.7677 3.7062 25 14 9.7109 12.2809 4.7957 26 1 9.0646 13.5214 4.2972 27 1 9.0092 11.8137 6.0183 28 1 11.1337 12.5594 5.1175 29 6 4.7640 4.8186 1.1950 30 6 4.3031 3.5153 1.1956 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 3.9337 0.9286 0.8892 39 1 3.9330 0.9287 -0.8908 40 1 4.1319 3.0016 -2.1338 41 1 4.9440 5.3261 -2.1349 42 1 5.1323 7.4039 -0.8936 43 1 5.1317 7.4050 0.8864 44 1 6.4647 9.5621 -0.8796 45 1 6.5215 9.5862 0.9090 46 1 8.9344 9.3423 -1.9246 47 1 10.3201 9.9090 -0.9129 48 1 8.9392 8.3374 2.1826 49 1 10.5289 8.8987 1.5820 50 1 10.5590 9.5774 4.5558 51 1 4.9433 5.3284 2.1301 52 1 4.1235 3.0065 2.1311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032502748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:35 Heat of formation + Delta-G solvation = 22.656323 kcal Electronic energy + Delta-G solvation = -29294.280429 eV Core-core repulsion = 25452.298064 eV Total energy + Delta-G solvation = -3841.982366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.19358 -39.43719 -37.76072 -36.03607 -33.64397 -33.23559 -31.61959 -30.86079 -30.22649 -28.98158 -28.56049 -26.86807 -25.21083 -24.01249 -23.22205 -22.68841 -21.49088 -20.96492 -20.19154 -19.82648 -18.40398 -17.19150 -16.37484 -16.12514 -16.09474 -15.61695 -15.32725 -15.04575 -14.71557 -14.42978 -14.31665 -13.92880 -13.46059 -13.40971 -13.38909 -13.13962 -13.01775 -12.80037 -12.22735 -12.15293 -11.98261 -11.83843 -11.67736 -11.56861 -11.48898 -11.37860 -11.30445 -11.01637 -10.96725 -10.87099 -10.80919 -10.74862 -10.72417 -10.58841 -10.25083 -10.07246 -9.66739 -9.44540 -8.82479 -8.73218 -8.42401 -7.97751 -6.94580 -5.78607 -3.13582 1.36914 1.50097 3.09020 3.35334 3.39861 3.40474 3.43690 3.86813 4.39958 4.48570 4.61335 4.76319 4.81991 4.83821 4.90370 5.00765 5.05433 5.07519 5.17988 5.22520 5.30875 5.39428 5.40970 5.43191 5.48708 5.53268 5.54849 5.55704 5.62047 5.64722 5.70531 5.74541 5.76835 5.83748 5.91548 5.96063 6.03727 6.10761 6.14609 6.19274 6.28040 6.41065 6.45699 6.50829 6.58675 6.64437 6.69116 6.70305 7.07580 7.42056 7.49186 7.71269 8.08452 8.13596 8.64355 9.09091 9.69356 10.38251 11.33138 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002033 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.925846 B =13772.147949 C =14534.587960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.079 4.079 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.061 4.061 9 C -0.099 4.099 10 C 0.529 3.471 11 O -0.548 6.548 12 N -0.609 5.609 13 C 0.083 3.917 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.112 0.888 19 C 0.176 3.824 20 N -0.597 5.597 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.007 4.007 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C -0.101 4.101 30 C -0.116 4.116 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.046 0.954 49 H 0.055 0.945 50 H 0.253 0.747 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.629 -12.398 -10.854 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.061 4.061 9 C -0.139 4.139 10 C 0.317 3.683 11 O -0.426 6.426 12 N -0.343 5.343 13 C -0.042 4.042 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.192 4.192 17 C -0.004 4.004 18 H 0.130 0.870 19 C 0.051 3.949 20 N -0.321 5.321 21 C -0.360 4.360 22 H 0.099 0.901 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.119 4.119 30 C -0.134 4.134 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.261 -12.991 -10.569 22.657 hybrid contribution 0.093 0.738 0.892 1.161 sum -15.167 -12.253 -9.677 21.768 Atomic orbital electron populations 1.21775 0.95938 1.01475 1.01860 1.21557 0.95826 0.96947 1.02003 1.21605 0.94501 0.96571 1.02444 1.20595 0.95455 0.92855 1.02742 1.19804 0.99763 0.95989 0.93254 1.20902 1.00641 0.94741 0.97316 1.20924 0.99081 0.94860 0.97294 1.19317 0.98418 0.94863 0.93517 1.20649 0.93247 0.95078 1.04895 1.19986 0.88998 0.82594 0.76688 1.90686 1.70190 1.30619 1.51110 1.49247 1.08103 1.05339 1.71573 1.23294 0.98171 0.82593 1.00175 1.23162 0.90402 0.95780 0.87501 0.87591 1.24223 1.01122 0.96921 0.96919 1.24412 0.80050 0.96849 0.99113 0.87000 1.21810 0.98846 0.84184 0.90089 1.45124 1.66265 1.09958 1.10732 1.19098 1.32290 0.92000 0.92591 0.90082 1.24836 1.00523 0.97013 0.97969 1.69936 1.42650 1.19847 1.24094 0.86040 0.77358 0.80562 0.81721 1.20447 1.21790 1.21729 1.21004 0.98419 0.94875 0.97581 1.20937 1.00329 0.94737 0.97410 0.92775 0.92882 0.92745 0.92060 0.92023 0.91881 0.91824 0.91147 0.91203 0.86439 0.86433 0.88509 0.88215 0.92846 0.91107 0.91685 0.89854 0.93586 0.92664 0.93617 0.86178 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.13 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 4 C -0.08 -0.69 5.35 -27.88 -0.15 -0.84 16 5 C -0.09 -1.01 5.13 -104.63 -0.54 -1.55 16 6 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 7 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 8 C -0.06 -0.86 4.37 -104.63 -0.46 -1.32 16 9 C -0.10 -1.38 5.12 -29.03 -0.15 -1.53 16 10 C 0.53 9.65 7.89 -10.99 -0.09 9.57 16 11 O -0.55 -11.91 16.38 5.55 0.09 -11.82 16 12 N -0.61 -11.14 2.95 -156.56 -0.46 -11.61 16 13 C 0.08 1.37 6.00 -1.68 -0.01 1.36 16 14 C 0.14 2.55 5.53 -62.55 -0.35 2.20 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.15 -2.56 6.84 -22.09 -0.15 -2.71 16 17 C 0.10 1.92 5.25 -62.34 -0.33 1.59 16 18 H 0.11 2.16 8.06 -51.93 -0.42 1.74 16 19 C 0.18 4.23 4.74 -1.95 -0.01 4.22 16 20 N -0.60 -14.19 3.01 -156.74 -0.47 -14.67 16 21 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.73 10.53 55.49 0.58 -26.14 16 25 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 C -0.10 -1.41 9.70 -39.59 -0.38 -1.79 16 30 C -0.12 -1.44 9.70 -39.58 -0.38 -1.83 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 43 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 48 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 49 H 0.06 1.47 7.42 -51.93 -0.39 1.08 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 51 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 52 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 417.24 15.07 6.29 6.29 Total: -1.00 -32.11 417.24 -12.13 -44.24 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -9.19 Total: 2.37 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.94 Total: -5.22 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.35 Total: -52.42 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.11 -12.13 -44.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032502748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.892 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds