Wall clock time and date at job start Wed Apr 1 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47291 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99885 * 269.72552 * 5 4 3 7 7 C 1.38247 * 119.99879 * 179.78507 * 6 5 4 8 8 C 1.38228 * 119.99534 * 0.44161 * 7 6 5 9 9 C 1.50703 * 119.99482 * 179.83404 * 8 7 6 10 10 C 1.50698 * 109.47367 * 269.97657 * 9 8 7 11 11 O 1.21287 * 119.99519 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.47859 * 126.94461 * 0.02562 * 12 10 9 14 14 C 1.56013 * 105.10607 * 181.97680 * 13 12 10 15 15 H 1.08998 * 116.25021 * 158.83369 * 14 13 12 16 16 C 1.57083 * 99.60733 * 32.80882 * 14 13 12 17 17 C 1.49290 * 126.94056 * 179.70736 * 12 10 9 18 18 H 1.08995 * 116.15606 * 16.73116 * 17 12 10 19 19 C 1.56023 * 104.09114 * 246.72001 * 17 12 10 20 20 N 1.47362 * 105.14875 * 288.60826 * 19 17 12 21 21 C 1.36935 * 126.79169 * 182.05593 * 20 19 17 22 22 H 1.08006 * 120.00072 * 180.28752 * 21 20 19 23 23 C 1.38817 * 119.99857 * 0.29616 * 21 20 19 24 24 N 1.31617 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47559 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47428 * 119.99757 * 25 23 21 28 28 H 1.48507 * 109.46892 * 239.99413 * 25 23 21 29 29 C 1.38231 * 120.00549 * 359.80991 * 8 7 6 30 30 C 1.38234 * 120.00037 * 359.97438 * 29 8 7 31 31 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 32 32 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 34 34 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 35 35 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 36 36 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 37 37 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 38 38 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 39 39 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 40 40 H 1.07999 * 120.00300 * 359.97438 * 6 5 4 41 41 H 1.07996 * 119.99572 * 180.27132 * 7 6 5 42 42 H 1.09003 * 109.47183 * 29.97799 * 9 8 7 43 43 H 1.09003 * 109.47354 * 149.97455 * 9 8 7 44 44 H 1.08999 * 110.31683 * 300.88594 * 13 12 10 45 45 H 1.09005 * 110.31839 * 63.06946 * 13 12 10 46 46 H 1.09003 * 112.37189 * 64.26663 * 16 14 13 47 47 H 1.08999 * 112.37362 * 191.62504 * 16 14 13 48 48 H 1.08995 * 110.31505 * 47.67986 * 19 17 12 49 49 H 1.08996 * 110.31231 * 169.86555 * 19 17 12 50 50 H 0.96998 * 119.99778 * 179.97438 * 24 23 21 51 51 H 1.08004 * 119.99967 * 180.02562 * 29 8 7 52 52 H 1.07995 * 119.99943 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8632 -0.0013 6 6 4.3077 3.5125 -1.1987 7 6 4.7644 4.8174 -1.1993 8 6 4.9943 5.4696 -0.0025 9 6 5.4957 6.8908 -0.0031 10 6 7.0027 6.8919 -0.0026 11 8 7.6098 5.8419 -0.0013 12 7 7.6758 8.0596 -0.0026 13 6 7.0958 9.4197 -0.0024 14 6 8.3210 10.3841 -0.0544 15 1 8.1248 11.3939 -0.4149 16 6 9.3051 9.5118 -0.9136 17 6 9.1576 8.2410 0.0040 18 1 9.7497 7.3686 -0.2725 19 6 9.4554 8.8845 1.3938 20 7 8.9382 10.2612 1.2994 21 6 9.0062 11.2307 2.2640 22 1 8.5842 12.2075 2.0786 23 6 9.6175 10.9582 3.4802 24 7 10.1314 9.7677 3.7062 25 14 9.7109 12.2809 4.7957 26 1 9.0646 13.5214 4.2972 27 1 9.0092 11.8137 6.0183 28 1 11.1337 12.5594 5.1175 29 6 4.7640 4.8186 1.1950 30 6 4.3031 3.5153 1.1956 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 3.9337 0.9286 0.8892 39 1 3.9330 0.9287 -0.8908 40 1 4.1319 3.0016 -2.1338 41 1 4.9440 5.3261 -2.1349 42 1 5.1323 7.4039 -0.8936 43 1 5.1317 7.4050 0.8864 44 1 6.4647 9.5621 -0.8796 45 1 6.5215 9.5862 0.9090 46 1 8.9344 9.3423 -1.9246 47 1 10.3201 9.9090 -0.9129 48 1 8.9392 8.3374 2.1826 49 1 10.5289 8.8987 1.5820 50 1 10.5590 9.5774 4.5558 51 1 4.9433 5.3284 2.1301 52 1 4.1235 3.0065 2.1311 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032502748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:34 Heat of formation + Delta-G solvation = 7.239593 kcal Electronic energy + Delta-G solvation = -29294.948949 eV Core-core repulsion = 25452.298064 eV Total energy + Delta-G solvation = -3842.650885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63640 -40.51540 -39.18289 -36.74065 -35.46678 -34.17309 -33.26728 -31.80961 -31.33316 -30.42646 -30.21235 -27.80472 -26.98280 -25.29108 -24.41273 -23.64250 -22.44012 -21.90658 -21.42620 -21.31155 -19.98307 -18.83460 -17.92277 -17.48380 -17.05070 -16.86710 -16.36955 -16.23276 -15.95224 -15.77553 -15.62604 -14.93461 -14.85667 -14.77421 -14.29952 -14.13066 -13.83729 -13.82211 -13.61675 -13.47080 -13.36607 -13.10954 -12.97523 -12.91646 -12.80229 -12.74816 -12.40130 -12.27311 -12.16886 -12.11378 -11.99416 -11.97426 -11.87223 -11.77846 -11.53971 -11.48380 -11.37828 -10.97084 -10.71765 -9.79255 -9.51138 -9.39983 -8.91364 -7.85023 -5.21173 0.39276 0.53149 1.46337 1.46626 1.57076 1.67297 2.04991 2.47887 2.85519 3.32814 3.39457 3.66365 3.70755 3.84812 3.86564 3.91475 3.96654 4.05972 4.09404 4.13366 4.21822 4.22112 4.29818 4.37736 4.51652 4.53613 4.61231 4.64135 4.71182 4.76808 4.80276 4.84701 4.85766 4.95767 4.97996 4.98743 5.02909 5.14264 5.15496 5.19750 5.21513 5.26250 5.32386 5.39945 5.45578 5.50665 5.51538 5.55583 5.65422 5.69822 5.74279 6.10088 6.14078 6.70580 7.03098 7.21272 7.71050 8.41044 9.25992 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.002033 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.925846 B =13772.147949 C =14534.587960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.076 4.076 5 C -0.089 4.089 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.082 4.082 9 C -0.087 4.087 10 C 0.523 3.477 11 O -0.590 6.590 12 N -0.612 5.612 13 C 0.090 3.910 14 C 0.134 3.866 15 H 0.138 0.862 16 C -0.129 4.129 17 C 0.099 3.901 18 H 0.108 0.892 19 C 0.190 3.810 20 N -0.616 5.616 21 C -0.227 4.227 22 H 0.098 0.902 23 C -0.075 4.075 24 N -0.959 5.959 25 Si 0.977 3.023 26 H -0.256 1.256 27 H -0.301 1.301 28 H -0.298 1.298 29 C -0.124 4.124 30 C -0.128 4.128 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.104 0.896 47 H 0.078 0.922 48 H -0.007 1.007 49 H 0.015 0.985 50 H 0.243 0.757 51 H 0.112 0.888 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.901 -11.711 -13.653 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.114 4.114 5 C -0.089 4.089 6 C -0.141 4.141 7 C -0.130 4.130 8 C -0.083 4.083 9 C -0.126 4.126 10 C 0.314 3.686 11 O -0.471 6.471 12 N -0.345 5.345 13 C -0.034 4.034 14 C 0.028 3.972 15 H 0.156 0.844 16 C -0.168 4.168 17 C -0.005 4.005 18 H 0.126 0.874 19 C 0.064 3.936 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.116 0.884 23 C -0.267 4.267 24 N -0.608 5.608 25 Si 0.806 3.194 26 H -0.180 1.180 27 H -0.228 1.228 28 H -0.225 1.225 29 C -0.142 4.142 30 C -0.146 4.146 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.123 0.877 47 H 0.096 0.904 48 H 0.012 0.988 49 H 0.033 0.967 50 H 0.052 0.948 51 H 0.130 0.870 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.581 -12.258 -13.420 25.287 hybrid contribution 0.778 0.470 1.728 1.953 sum -16.803 -11.788 -11.691 23.622 Atomic orbital electron populations 1.21780 0.95587 1.01932 1.01807 1.21541 0.96125 0.96110 1.02367 1.21546 0.93582 0.97335 1.02103 1.20631 0.96143 0.91175 1.03412 1.20147 0.98722 0.97164 0.92843 1.21252 0.99865 0.94542 0.98417 1.21195 0.98830 0.95480 0.97450 1.19452 0.99513 0.95248 0.94054 1.20635 0.89616 0.95737 1.06660 1.20781 0.90722 0.81745 0.75360 1.90659 1.71440 1.32106 1.52908 1.49347 1.07390 1.06395 1.71367 1.23245 0.97552 0.80826 1.01773 1.23614 0.90935 0.98076 0.84588 0.84447 1.24118 1.00796 0.93987 0.97895 1.24199 0.81476 0.97890 0.96912 0.87363 1.21376 0.95726 0.84934 0.91577 1.45387 1.66684 1.09160 1.12826 1.19605 1.30181 0.92939 0.92864 0.88435 1.25693 1.01513 0.98914 1.00581 1.70185 1.44608 1.22076 1.23979 0.85013 0.76687 0.78949 0.78721 1.18009 1.22833 1.22519 1.21146 0.99627 0.95858 0.97580 1.21169 1.00341 0.94415 0.98636 0.92662 0.92197 0.92994 0.91474 0.91898 0.91901 0.92502 0.90870 0.90153 0.84034 0.84794 0.85102 0.87749 0.87556 0.92792 0.87744 0.90354 0.98841 0.96727 0.94805 0.87036 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.22 16 3 C -0.11 -1.48 5.20 30.59 0.16 -1.32 16 4 C -0.08 -1.21 5.35 29.85 0.16 -1.05 16 5 C -0.09 -1.93 5.13 -19.87 -0.10 -2.03 16 6 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 7 C -0.11 -2.70 9.70 22.27 0.22 -2.49 16 8 C -0.08 -2.27 4.37 -19.87 -0.09 -2.36 16 9 C -0.09 -2.30 5.12 29.10 0.15 -2.15 16 10 C 0.52 18.79 7.89 87.66 0.69 19.48 16 11 O -0.59 -26.06 16.38 -3.05 -0.05 -26.11 16 12 N -0.61 -21.70 2.95 -767.64 -2.26 -23.96 16 13 C 0.09 2.70 6.00 87.16 0.52 3.23 16 14 C 0.13 4.49 5.53 46.93 0.26 4.74 16 15 H 0.14 3.77 8.14 -2.39 -0.02 3.76 16 16 C -0.13 -3.99 6.84 33.60 0.23 -3.76 16 17 C 0.10 3.86 5.25 47.07 0.25 4.11 16 18 H 0.11 4.29 8.06 -2.39 -0.02 4.27 16 19 C 0.19 9.60 4.74 87.26 0.41 10.02 16 20 N -0.62 -29.38 3.01 -649.82 -1.95 -31.33 16 21 C -0.23 -11.95 10.37 84.03 0.87 -11.08 16 22 H 0.10 4.71 7.83 -2.91 -0.02 4.69 16 23 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 24 N -0.96 -59.01 10.53 21.65 0.23 -58.78 16 25 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 29 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16 30 C -0.13 -3.16 9.70 22.27 0.22 -2.95 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 39 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 42 H 0.13 2.51 8.09 -2.39 -0.02 2.49 16 43 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 48 H -0.01 -0.40 7.68 -2.39 -0.02 -0.41 16 49 H 0.01 0.84 7.42 -2.39 -0.02 0.82 16 50 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 51 H 0.11 3.21 8.06 -2.91 -0.02 3.18 16 52 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -74.71 417.24 4.60 -70.11 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.87 Total: 21.95 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.74 Total: 0.77 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -3.99 Total: -114.07 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.71 4.60 -70.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032502748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.350 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds