Wall clock time and date at job start Wed Apr 1 2020 01:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46917 * 2 1 4 4 C 1.53008 * 109.47115 * 119.99046 * 2 1 3 5 5 C 1.50703 * 109.46707 * 65.00816 * 4 2 1 6 6 C 1.38236 * 119.99705 * 269.72433 * 5 4 2 7 7 C 1.38237 * 120.00072 * 179.78729 * 6 5 4 8 8 C 1.38229 * 119.99620 * 0.44579 * 7 6 5 9 9 C 1.50702 * 119.99940 * 179.83332 * 8 7 6 10 10 C 1.50702 * 109.47045 * 269.97299 * 9 8 7 11 11 O 1.21281 * 120.00173 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99930 * 179.97438 * 10 9 8 13 13 C 1.47871 * 126.94648 * 0.03207 * 12 10 9 14 14 C 1.56027 * 105.10246 * 181.97701 * 13 12 10 15 15 H 1.09002 * 116.24215 * 158.83953 * 14 13 12 16 16 C 1.57073 * 99.60835 * 32.80400 * 14 13 12 17 17 C 1.49293 * 126.94376 * 179.70963 * 12 10 9 18 18 H 1.09005 * 116.15463 * 16.73036 * 17 12 10 19 19 C 1.56016 * 104.09312 * 246.72532 * 17 12 10 20 20 N 1.47361 * 105.14877 * 288.60108 * 19 17 12 21 21 C 1.36941 * 126.79377 * 182.05516 * 20 19 17 22 22 H 1.07998 * 119.99826 * 173.96487 * 21 20 19 23 23 C 1.38817 * 119.99780 * 353.96949 * 21 20 19 24 24 N 1.31615 * 119.99979 * 6.45489 * 23 21 20 25 25 Si 1.86792 * 119.99771 * 186.45655 * 23 21 20 26 26 H 1.48496 * 109.47709 * 94.98408 * 25 23 21 27 27 H 1.48507 * 109.46974 * 214.98328 * 25 23 21 28 28 H 1.48501 * 109.47349 * 334.98163 * 25 23 21 29 29 C 1.38235 * 120.00149 * 359.80587 * 8 7 6 30 30 C 1.38231 * 120.00256 * 359.97438 * 29 8 7 31 31 H 1.08996 * 109.47483 * 300.00355 * 1 2 3 32 32 H 1.09006 * 109.46447 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46957 * 60.01013 * 1 2 3 34 34 H 1.08996 * 109.47483 * 239.99645 * 2 1 3 35 35 H 1.08996 * 109.47334 * 59.99554 * 3 2 1 36 36 H 1.09002 * 109.47007 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46480 * 299.99279 * 3 2 1 38 38 H 1.08994 * 109.46962 * 185.00385 * 4 2 1 39 39 H 1.08996 * 109.47343 * 305.00890 * 4 2 1 40 40 H 1.08008 * 119.99979 * 0.02562 * 6 5 4 41 41 H 1.07994 * 119.99997 * 180.27314 * 7 6 5 42 42 H 1.08996 * 109.47336 * 29.97454 * 9 8 7 43 43 H 1.09002 * 109.47411 * 149.97580 * 9 8 7 44 44 H 1.08998 * 110.31432 * 300.88156 * 13 12 10 45 45 H 1.08992 * 110.31526 * 63.07054 * 13 12 10 46 46 H 1.08999 * 112.37321 * 64.27440 * 16 14 13 47 47 H 1.09005 * 112.36824 * 191.62801 * 16 14 13 48 48 H 1.08993 * 110.31781 * 47.67709 * 19 17 12 49 49 H 1.09002 * 110.31642 * 169.86546 * 19 17 12 50 50 H 0.97001 * 120.00388 * 180.02562 * 24 23 21 51 51 H 1.08007 * 119.99950 * 180.02562 * 29 8 7 52 52 H 1.07993 * 120.00469 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6415 -2.1732 1.1891 6 6 0.4382 -2.5828 1.7326 7 6 0.0706 -3.9140 1.6734 8 6 0.9103 -4.8371 1.0790 9 6 0.5113 -6.2891 1.0178 10 6 1.0141 -7.0005 2.2474 11 8 1.6350 -6.3887 3.0907 12 7 0.7730 -8.3164 2.4105 13 6 0.0372 -9.2064 1.4869 14 6 0.0169 -10.5977 2.1928 15 1 -0.7592 -11.2911 1.8690 16 6 -0.0408 -10.1306 3.6913 17 6 1.2006 -9.1716 3.5571 18 1 1.5100 -8.6452 4.4601 19 6 2.2304 -10.1614 2.9294 20 7 1.4283 -11.0747 2.0964 21 6 1.8883 -12.1436 1.3744 22 1 1.1897 -12.8005 0.8777 23 6 3.2526 -12.3827 1.2812 24 7 4.0969 -11.6612 1.9876 25 14 3.8900 -13.7283 0.1534 26 1 4.2626 -13.1399 -1.1581 27 1 5.0831 -14.3648 0.7672 28 1 2.8311 -14.7503 -0.0456 29 6 2.1159 -4.4284 0.5401 30 6 2.4815 -3.0965 0.5952 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 -1.0278 0.0005 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 -0.0005 37 1 1.6767 1.9562 -0.8901 38 1 3.1263 -0.6441 1.2953 39 1 1.6053 -0.2616 2.1371 40 1 -0.2164 -1.8620 2.2001 41 1 -0.8714 -4.2333 2.0941 42 1 -0.5750 -6.3657 0.9724 43 1 0.9453 -6.7481 0.1295 44 1 -0.9794 -8.8418 1.3398 45 1 0.5577 -9.2742 0.5317 46 1 -0.9604 -9.5934 3.9233 47 1 0.1402 -10.9490 4.3882 48 1 2.9502 -9.6198 2.3158 49 1 2.7437 -10.7202 3.7120 50 1 5.0502 -11.8280 1.9222 51 1 2.7719 -5.1496 0.0752 52 1 3.4235 -2.7772 0.1746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032506843.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:36 Heat of formation + Delta-G solvation = 10.566605 kcal Electronic energy + Delta-G solvation = -29689.778443 eV Core-core repulsion = 25847.271828 eV Total energy + Delta-G solvation = -3842.506615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.63586 -40.59317 -39.24321 -37.15236 -35.46029 -33.88051 -33.13203 -31.82633 -30.93670 -30.26374 -29.52759 -27.96308 -26.97920 -26.34349 -25.02106 -23.62542 -22.65587 -21.60225 -21.40085 -20.79145 -19.97632 -18.83657 -17.91842 -17.48868 -17.13345 -16.75891 -16.39165 -16.08440 -15.96597 -15.68311 -15.41899 -15.14989 -14.84577 -14.78342 -14.32884 -14.24183 -13.83180 -13.58595 -13.41429 -13.34091 -13.18144 -13.11360 -13.04533 -12.90866 -12.83002 -12.74293 -12.60945 -12.37991 -12.27970 -12.11125 -12.02947 -11.86773 -11.84957 -11.69235 -11.54661 -11.48987 -11.48557 -10.95217 -10.69849 -9.76872 -9.51013 -9.37995 -8.90156 -7.86203 -5.21351 0.40525 0.54125 1.45986 1.47329 1.56313 1.67700 2.05392 2.47822 2.86344 3.31528 3.40072 3.66785 3.71699 3.85710 3.88335 3.91754 3.96986 4.05558 4.07191 4.10470 4.17381 4.22059 4.32662 4.40726 4.52460 4.60788 4.63721 4.67932 4.71693 4.79429 4.84161 4.86000 4.87488 4.95875 4.98093 5.02910 5.07798 5.08923 5.14874 5.17099 5.21474 5.25592 5.34929 5.45044 5.46192 5.48691 5.53760 5.56897 5.65097 5.70814 5.75743 6.10067 6.14969 6.70910 7.02703 7.21628 7.70960 8.41519 9.25100 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018891 B = 0.002199 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.862250 B =12732.462686 C =13479.806147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.084 4.084 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.082 4.082 9 C -0.087 4.087 10 C 0.523 3.477 11 O -0.590 6.590 12 N -0.611 5.611 13 C 0.090 3.910 14 C 0.134 3.866 15 H 0.138 0.862 16 C -0.129 4.129 17 C 0.099 3.901 18 H 0.109 0.891 19 C 0.189 3.811 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.097 0.903 23 C -0.073 4.073 24 N -0.957 5.957 25 Si 0.976 3.024 26 H -0.292 1.292 27 H -0.303 1.303 28 H -0.259 1.259 29 C -0.124 4.124 30 C -0.128 4.128 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.140 0.860 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.078 0.922 48 H -0.003 1.003 49 H 0.011 0.989 50 H 0.243 0.757 51 H 0.110 0.890 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 20.858 -3.744 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.084 4.084 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.082 4.082 9 C -0.127 4.127 10 C 0.314 3.686 11 O -0.471 6.471 12 N -0.345 5.345 13 C -0.034 4.034 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.168 4.168 17 C -0.004 4.004 18 H 0.127 0.873 19 C 0.063 3.937 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.115 0.885 23 C -0.266 4.266 24 N -0.606 5.606 25 Si 0.805 3.195 26 H -0.220 1.220 27 H -0.230 1.230 28 H -0.183 1.183 29 C -0.142 4.142 30 C -0.146 4.146 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.097 0.903 48 H 0.015 0.985 49 H 0.029 0.971 50 H 0.052 0.948 51 H 0.128 0.872 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.747 21.129 -3.406 24.910 hybrid contribution 1.559 -1.106 -0.435 1.961 sum -11.188 20.023 -3.841 23.256 Atomic orbital electron populations 1.21906 0.94887 1.01772 1.02058 1.21054 0.96372 0.96276 0.97035 1.21830 1.01068 0.95048 1.02277 1.20704 1.01355 0.89794 0.99153 1.20086 0.94488 0.96361 0.97490 1.21214 0.96702 0.95675 0.99994 1.21183 1.00072 0.93365 0.98416 1.19434 0.95393 0.94026 0.99346 1.20631 1.04524 0.91916 0.95581 1.20776 0.79148 0.80378 0.88313 1.90657 1.43361 1.66412 1.46650 1.49340 1.54688 1.07335 1.23099 1.23242 0.96441 0.91293 0.92411 1.23613 0.87282 0.92585 0.93698 0.84474 1.24119 0.96689 0.98105 0.97892 1.24193 0.96944 0.89547 0.89753 0.87348 1.21390 0.90940 0.89266 0.92121 1.45377 1.03211 1.31112 1.54332 1.19554 0.91018 1.02563 1.22642 0.88504 1.25708 0.96621 1.02306 1.01924 1.70186 1.01397 1.44384 1.44613 0.85080 0.77701 0.78737 0.77972 1.21969 1.23029 1.18335 1.21127 0.96068 0.96614 1.00420 1.21153 1.00221 0.92650 1.00585 0.92038 0.93069 0.92444 0.92016 0.92117 0.92555 0.92175 0.90886 0.90221 0.84205 0.84872 0.85137 0.87844 0.87583 0.92853 0.87750 0.90320 0.98477 0.97123 0.94791 0.87162 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.78 71.98 0.63 -1.33 16 2 C -0.09 -1.23 2.91 -10.79 -0.03 -1.26 16 3 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 4 C -0.07 -1.17 4.84 29.85 0.14 -1.02 16 5 C -0.08 -1.82 4.70 -19.87 -0.09 -1.91 16 6 C -0.12 -2.53 7.98 22.27 0.18 -2.35 16 7 C -0.11 -2.71 9.70 22.27 0.22 -2.50 16 8 C -0.08 -2.26 4.37 -19.87 -0.09 -2.34 16 9 C -0.09 -2.31 5.12 29.10 0.15 -2.17 16 10 C 0.52 18.85 7.89 87.66 0.69 19.54 16 11 O -0.59 -26.06 16.38 -3.03 -0.05 -26.11 16 12 N -0.61 -21.74 2.95 -767.62 -2.26 -24.00 16 13 C 0.09 2.72 6.00 87.17 0.52 3.25 16 14 C 0.13 4.50 5.53 46.93 0.26 4.76 16 15 H 0.14 3.77 8.14 -2.39 -0.02 3.75 16 16 C -0.13 -3.98 6.84 33.59 0.23 -3.75 16 17 C 0.10 3.87 5.25 47.06 0.25 4.12 16 18 H 0.11 4.29 8.06 -2.38 -0.02 4.27 16 19 C 0.19 9.54 4.75 87.26 0.41 9.96 16 20 N -0.62 -29.37 3.01 -649.82 -1.95 -31.32 16 21 C -0.23 -12.06 10.36 84.03 0.87 -11.19 16 22 H 0.10 4.68 7.84 -2.91 -0.02 4.66 16 23 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 24 N -0.96 -58.86 10.58 21.65 0.23 -58.63 16 25 Si 0.98 45.30 29.56 68.60 2.03 47.33 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 29 C -0.12 -3.55 9.70 22.27 0.22 -3.33 16 30 C -0.13 -3.18 9.70 22.27 0.22 -2.96 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.79 6.28 -2.38 -0.01 0.77 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 39 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 40 H 0.14 2.30 8.05 -2.91 -0.02 2.27 16 41 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 42 H 0.13 2.52 8.08 -2.39 -0.02 2.50 16 43 H 0.10 2.66 8.09 -2.39 -0.02 2.64 16 44 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.08 2.53 8.14 -2.38 -0.02 2.52 16 48 H 0.00 -0.18 7.53 -2.39 -0.02 -0.20 16 49 H 0.01 0.61 7.60 -2.39 -0.02 0.59 16 50 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 52 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -74.41 412.63 4.77 -69.64 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.87 Total: 22.16 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.90 Total: 0.92 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.99 Total: -113.94 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.41 4.77 -69.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032506843.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.211 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds