Wall clock time and date at job start Wed Apr 1 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 C 1.53005 * 109.46780 * 120.00123 * 2 1 3 5 5 H 1.08995 * 109.47209 * 52.18132 * 4 2 1 6 6 C 1.53000 * 109.47030 * 292.17802 * 4 2 1 7 7 C 1.50698 * 109.46907 * 66.93896 * 6 4 2 8 8 C 1.38240 * 120.00120 * 246.69651 * 7 6 4 9 9 C 1.38239 * 119.99788 * 179.79122 * 8 7 6 10 10 C 1.38234 * 120.00105 * 0.45775 * 9 8 7 11 11 C 1.38232 * 119.99990 * 359.77084 * 10 9 8 12 12 C 1.38235 * 120.00144 * 0.02739 * 11 10 9 13 13 C 1.50703 * 109.46711 * 172.18146 * 4 2 1 14 14 O 1.21277 * 119.99750 * 110.82657 * 13 4 2 15 15 N 1.34772 * 120.00272 * 290.82509 * 13 4 2 16 16 C 1.47870 * 126.94279 * 356.33344 * 15 13 4 17 17 C 1.58427 * 104.83328 * 182.30329 * 16 15 13 18 18 H 1.09005 * 116.62936 * 159.51347 * 17 16 15 19 19 C 1.57432 * 99.62328 * 32.32195 * 17 16 15 20 20 C 1.49288 * 126.95014 * 176.33081 * 15 13 4 21 21 H 1.09005 * 116.14600 * 15.83901 * 20 15 13 22 22 C 1.56014 * 104.09428 * 246.69902 * 20 15 13 23 23 N 1.47868 * 105.10820 * 287.91943 * 22 20 15 24 24 C 1.36935 * 126.94747 * 181.98103 * 23 22 20 25 25 H 1.08002 * 120.00054 * 180.02562 * 24 23 22 26 26 C 1.38811 * 119.99777 * 0.02562 * 24 23 22 27 27 N 1.31620 * 120.00323 * 0.02562 * 26 24 23 28 28 Si 1.86805 * 119.99558 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47199 * 60.00671 * 28 26 24 30 30 H 1.48505 * 109.46791 * 180.02562 * 28 26 24 31 31 H 1.48500 * 109.47360 * 300.00368 * 28 26 24 32 32 H 1.09002 * 109.47491 * 198.96183 * 1 2 3 33 33 H 1.09000 * 109.47601 * 318.96687 * 1 2 3 34 34 H 1.09001 * 109.47222 * 78.96405 * 1 2 3 35 35 H 1.09001 * 109.46708 * 240.00048 * 2 1 3 36 36 H 1.09001 * 109.46995 * 179.29986 * 3 2 1 37 37 H 1.08998 * 109.47183 * 299.30085 * 3 2 1 38 38 H 1.09004 * 109.46943 * 59.29965 * 3 2 1 39 39 H 1.09000 * 109.47025 * 186.93882 * 6 4 2 40 40 H 1.09003 * 109.47199 * 306.94334 * 6 4 2 41 41 H 1.08000 * 119.99989 * 359.97438 * 8 7 6 42 42 H 1.08001 * 119.99483 * 180.25194 * 9 8 7 43 43 H 1.07992 * 119.99711 * 179.79163 * 10 9 8 44 44 H 1.07998 * 120.00040 * 179.97438 * 11 10 9 45 45 H 1.07997 * 120.00109 * 179.97438 * 12 11 10 46 46 H 1.09000 * 110.31518 * 300.90974 * 16 15 13 47 47 H 1.09001 * 110.32127 * 62.98836 * 16 15 13 48 48 H 1.08997 * 112.53809 * 192.40559 * 19 17 16 49 49 H 1.09009 * 112.31458 * 64.87554 * 19 17 16 50 50 H 1.08997 * 110.31932 * 169.00853 * 22 20 15 51 51 H 1.09011 * 110.40161 * 46.87124 * 22 20 15 52 52 H 0.96995 * 120.00068 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5669 -1.7006 1.3219 6 6 1.6965 0.1043 2.4908 7 6 0.2015 0.1308 2.6786 8 6 -0.4928 1.3171 2.5318 9 6 -1.8647 1.3405 2.6999 10 6 -2.5412 0.1794 3.0241 11 6 -1.8463 -1.0060 3.1756 12 6 -0.4750 -1.0302 3.0034 13 6 3.5345 -0.8909 1.1564 14 8 4.2628 -0.2665 1.8984 15 7 4.0617 -1.7364 0.2490 16 6 3.3219 -2.6242 -0.6736 17 6 4.4447 -3.4228 -1.4556 18 1 4.1408 -4.3572 -1.9275 19 6 5.5407 -3.5075 -0.3286 20 6 5.5106 -1.9661 -0.0281 21 1 6.2074 -1.6040 0.7279 22 6 5.7130 -1.4150 -1.4735 23 7 5.0464 -2.3958 -2.3568 24 6 4.9878 -2.3652 -3.7245 25 1 4.4668 -3.1449 -4.2603 26 6 5.5980 -1.3319 -4.4223 27 7 6.2333 -0.3819 -3.7694 28 14 5.5186 -1.2905 -6.2882 29 1 4.0998 -1.2275 -6.7221 30 1 6.2431 -0.0944 -6.7880 31 1 6.1503 -2.5169 -6.8379 32 1 -0.3634 -0.9719 0.3339 33 1 -0.3634 0.7752 0.6746 34 1 -0.3634 0.1967 -1.0087 35 1 1.8933 -0.5138 -0.8900 36 1 3.1299 1.4425 0.0126 37 1 1.6869 1.9527 -0.8962 38 1 1.6664 1.9599 0.8837 39 1 2.1649 -0.3446 3.3666 40 1 2.0647 1.1224 2.3634 41 1 0.0363 2.2252 2.2829 42 1 -2.4075 2.2665 2.5812 43 1 -3.6125 0.1983 3.1588 44 1 -2.3748 -1.9131 3.4293 45 1 0.0679 -1.9563 3.1222 46 1 2.6920 -3.3137 -0.1115 47 1 2.7160 -2.0347 -1.3617 48 1 6.5072 -3.8371 -0.7097 49 1 5.2128 -4.1029 0.5237 50 1 6.7753 -1.3536 -1.7099 51 1 5.2461 -0.4353 -1.5755 52 1 6.6600 0.3398 -4.2571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032624935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:06 Heat of formation + Delta-G solvation = 43.929469 kcal Electronic energy + Delta-G solvation = -31629.542920 eV Core-core repulsion = 27788.483028 eV Total energy + Delta-G solvation = -3841.059893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.60438 -39.60045 -38.05982 -36.03665 -33.61663 -32.19467 -31.52210 -31.05155 -29.45190 -28.70632 -28.41104 -26.97248 -25.25057 -24.98797 -23.38361 -22.65332 -21.40925 -20.86993 -19.89417 -19.25771 -18.29958 -17.24725 -16.80807 -16.20727 -15.91841 -15.74601 -15.18229 -14.91699 -14.68102 -14.42896 -13.98921 -13.74051 -13.51885 -13.30454 -13.14089 -13.00736 -12.82029 -12.49191 -12.25007 -12.14204 -11.99029 -11.75036 -11.63361 -11.49161 -11.32994 -11.14519 -11.03590 -10.97538 -10.88139 -10.83763 -10.78715 -10.57952 -10.48239 -10.37827 -10.18822 -10.06901 -9.63805 -9.27973 -8.93006 -8.70959 -8.51612 -7.95996 -6.92968 -5.77689 -3.12154 1.26024 1.29211 3.08111 3.36358 3.40855 3.42124 3.42780 3.70593 4.41101 4.61636 4.68809 4.87133 4.89294 4.93814 4.96882 5.02641 5.11103 5.14660 5.35610 5.36974 5.40711 5.45691 5.49718 5.52804 5.54012 5.62463 5.67496 5.78346 5.83339 5.88577 5.90286 5.94201 5.98396 6.05644 6.09546 6.16834 6.20177 6.30708 6.33527 6.38431 6.40863 6.41248 6.45933 6.54066 6.58409 6.59721 6.61972 6.73704 6.90915 7.41407 7.48914 7.71022 8.08655 8.15760 8.64538 9.09193 9.70158 10.39459 11.34082 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.003198 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.010304 B = 8752.978608 C = 9409.947841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.089 4.089 5 H 0.088 0.912 6 C -0.068 4.068 7 C -0.060 4.060 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.129 4.129 11 C -0.118 4.118 12 C -0.121 4.121 13 C 0.533 3.467 14 O -0.557 6.557 15 N -0.604 5.604 16 C 0.080 3.920 17 C 0.142 3.858 18 H 0.106 0.894 19 C -0.150 4.150 20 C 0.097 3.903 21 H 0.111 0.889 22 C 0.175 3.825 23 N -0.596 5.596 24 C -0.233 4.233 25 H 0.080 0.920 26 C -0.004 4.004 27 N -0.918 5.918 28 Si 0.912 3.088 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.054 0.946 51 H 0.047 0.953 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.396 -1.503 12.814 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.105 4.105 3 C -0.205 4.205 4 C -0.110 4.110 5 H 0.107 0.893 6 C -0.105 4.105 7 C -0.060 4.060 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.147 4.147 11 C -0.136 4.136 12 C -0.139 4.139 13 C 0.322 3.678 14 O -0.437 6.437 15 N -0.336 5.336 16 C -0.045 4.045 17 C 0.033 3.967 18 H 0.124 0.876 19 C -0.190 4.190 20 C -0.006 4.006 21 H 0.129 0.871 22 C 0.050 3.950 23 N -0.320 5.320 24 C -0.361 4.361 25 H 0.097 0.903 26 C -0.201 4.201 27 N -0.565 5.565 28 Si 0.742 3.258 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.211 1.211 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.944 -0.929 13.020 19.100 hybrid contribution -0.121 0.070 -1.160 1.169 sum -14.065 -0.858 11.860 18.418 Atomic orbital electron populations 1.22401 0.94732 1.02510 1.01973 1.21069 0.95964 0.96729 0.96696 1.21923 1.01738 0.95539 1.01316 1.21349 0.92615 1.00412 0.96656 0.89349 1.20526 0.90569 1.02295 0.97135 1.19890 0.95743 0.93345 0.97071 1.20999 0.94304 0.97736 1.00087 1.21104 0.94375 0.98244 1.00230 1.21074 0.99644 0.93021 1.01000 1.21091 0.94303 0.97926 1.00261 1.21005 0.94352 0.97910 1.00589 1.20106 0.90036 0.78521 0.79155 1.90645 1.62422 1.47450 1.43138 1.49139 1.08431 1.40234 1.35842 1.23805 0.96128 0.92789 0.91824 1.23693 0.90743 0.92738 0.89566 0.87607 1.24171 1.00829 0.95245 0.98735 1.24291 0.81726 0.95711 0.98855 0.87117 1.21914 0.97745 0.92226 0.83098 1.45229 1.61334 1.24023 1.01391 1.18990 1.29892 1.07432 0.79752 0.90260 1.24807 1.00118 0.97180 0.98022 1.69905 1.39236 1.13540 1.33791 0.86216 0.77528 0.77006 0.85069 1.21164 1.21631 1.21130 0.92833 0.90602 0.93250 0.90033 0.92284 0.92656 0.92505 0.90289 0.89601 0.86013 0.86314 0.86508 0.86381 0.86278 0.93121 0.90835 0.89779 0.91768 0.92768 0.93509 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 7.86 37.16 0.29 -1.64 16 2 C -0.09 -1.21 2.60 -90.62 -0.24 -1.45 16 3 C -0.15 -2.17 8.38 37.16 0.31 -1.86 16 4 C -0.09 -1.24 1.51 -91.77 -0.14 -1.38 16 5 H 0.09 1.13 7.37 -51.93 -0.38 0.75 16 6 C -0.07 -0.86 3.87 -27.88 -0.11 -0.97 16 7 C -0.06 -0.66 3.15 -104.62 -0.33 -0.99 16 8 C -0.11 -1.16 6.61 -39.58 -0.26 -1.42 16 9 C -0.12 -1.12 9.98 -39.58 -0.40 -1.51 16 10 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 12 C -0.12 -1.23 8.47 -39.58 -0.34 -1.56 16 13 C 0.53 9.47 6.24 -10.99 -0.07 9.40 16 14 O -0.56 -11.50 16.34 5.56 0.09 -11.40 16 15 N -0.60 -10.90 2.95 -155.21 -0.46 -11.36 16 16 C 0.08 1.34 5.71 -0.29 0.00 1.34 16 17 C 0.14 2.58 5.63 -60.97 -0.34 2.24 16 18 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 19 C -0.15 -2.53 6.86 -22.11 -0.15 -2.68 16 20 C 0.10 1.87 5.19 -62.56 -0.32 1.54 16 21 H 0.11 2.11 8.04 -51.93 -0.42 1.69 16 22 C 0.18 4.15 4.75 -1.68 -0.01 4.14 16 23 N -0.60 -14.06 3.02 -154.63 -0.47 -14.53 16 24 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 25 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 26 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 27 N -0.92 -26.45 10.56 55.49 0.59 -25.86 16 28 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 32 H 0.05 0.63 7.06 -51.93 -0.37 0.26 16 33 H 0.08 0.86 3.66 -51.93 -0.19 0.67 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.34 5.67 -51.93 -0.29 1.05 16 36 H 0.06 1.04 7.46 -51.93 -0.39 0.65 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.72 5.11 -51.93 -0.27 0.46 16 39 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 40 H 0.09 1.16 5.67 -51.93 -0.29 0.86 16 41 H 0.12 1.16 7.15 -52.49 -0.38 0.78 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.11 7.96 -52.49 -0.42 0.70 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 1.35 6.14 -51.93 -0.32 1.03 16 48 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 49 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 50 H 0.05 1.43 7.46 -51.93 -0.39 1.04 16 51 H 0.05 1.28 7.67 -51.92 -0.40 0.88 16 52 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -30.52 390.12 -10.80 -41.32 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.26 Total: 5.75 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.15 Total: -6.29 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.34 Total: -51.75 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.52 -10.80 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032624935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.247 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds