Wall clock time and date at job start Wed Apr 1 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 C 1.53005 * 109.46780 * 120.00123 * 2 1 3 5 5 H 1.08995 * 109.47209 * 52.18132 * 4 2 1 6 6 C 1.53000 * 109.47030 * 292.17802 * 4 2 1 7 7 C 1.50698 * 109.46907 * 66.93896 * 6 4 2 8 8 C 1.38240 * 120.00120 * 246.69651 * 7 6 4 9 9 C 1.38239 * 119.99788 * 179.79122 * 8 7 6 10 10 C 1.38234 * 120.00105 * 0.45775 * 9 8 7 11 11 C 1.38232 * 119.99990 * 359.77084 * 10 9 8 12 12 C 1.38235 * 120.00144 * 0.02739 * 11 10 9 13 13 C 1.50703 * 109.46711 * 172.18146 * 4 2 1 14 14 O 1.21277 * 119.99750 * 110.82657 * 13 4 2 15 15 N 1.34772 * 120.00272 * 290.82509 * 13 4 2 16 16 C 1.47870 * 126.94279 * 356.33344 * 15 13 4 17 17 C 1.58427 * 104.83328 * 182.30329 * 16 15 13 18 18 H 1.09005 * 116.62936 * 159.51347 * 17 16 15 19 19 C 1.57432 * 99.62328 * 32.32195 * 17 16 15 20 20 C 1.49288 * 126.95014 * 176.33081 * 15 13 4 21 21 H 1.09005 * 116.14600 * 15.83901 * 20 15 13 22 22 C 1.56014 * 104.09428 * 246.69902 * 20 15 13 23 23 N 1.47868 * 105.10820 * 287.91943 * 22 20 15 24 24 C 1.36935 * 126.94747 * 181.98103 * 23 22 20 25 25 H 1.08002 * 120.00054 * 180.02562 * 24 23 22 26 26 C 1.38811 * 119.99777 * 0.02562 * 24 23 22 27 27 N 1.31620 * 120.00323 * 0.02562 * 26 24 23 28 28 Si 1.86805 * 119.99558 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47199 * 60.00671 * 28 26 24 30 30 H 1.48505 * 109.46791 * 180.02562 * 28 26 24 31 31 H 1.48500 * 109.47360 * 300.00368 * 28 26 24 32 32 H 1.09002 * 109.47491 * 198.96183 * 1 2 3 33 33 H 1.09000 * 109.47601 * 318.96687 * 1 2 3 34 34 H 1.09001 * 109.47222 * 78.96405 * 1 2 3 35 35 H 1.09001 * 109.46708 * 240.00048 * 2 1 3 36 36 H 1.09001 * 109.46995 * 179.29986 * 3 2 1 37 37 H 1.08998 * 109.47183 * 299.30085 * 3 2 1 38 38 H 1.09004 * 109.46943 * 59.29965 * 3 2 1 39 39 H 1.09000 * 109.47025 * 186.93882 * 6 4 2 40 40 H 1.09003 * 109.47199 * 306.94334 * 6 4 2 41 41 H 1.08000 * 119.99989 * 359.97438 * 8 7 6 42 42 H 1.08001 * 119.99483 * 180.25194 * 9 8 7 43 43 H 1.07992 * 119.99711 * 179.79163 * 10 9 8 44 44 H 1.07998 * 120.00040 * 179.97438 * 11 10 9 45 45 H 1.07997 * 120.00109 * 179.97438 * 12 11 10 46 46 H 1.09000 * 110.31518 * 300.90974 * 16 15 13 47 47 H 1.09001 * 110.32127 * 62.98836 * 16 15 13 48 48 H 1.08997 * 112.53809 * 192.40559 * 19 17 16 49 49 H 1.09009 * 112.31458 * 64.87554 * 19 17 16 50 50 H 1.08997 * 110.31932 * 169.00853 * 22 20 15 51 51 H 1.09011 * 110.40161 * 46.87124 * 22 20 15 52 52 H 0.96995 * 120.00068 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5669 -1.7006 1.3219 6 6 1.6965 0.1043 2.4908 7 6 0.2015 0.1308 2.6786 8 6 -0.4928 1.3171 2.5318 9 6 -1.8647 1.3405 2.6999 10 6 -2.5412 0.1794 3.0241 11 6 -1.8463 -1.0060 3.1756 12 6 -0.4750 -1.0302 3.0034 13 6 3.5345 -0.8909 1.1564 14 8 4.2628 -0.2665 1.8984 15 7 4.0617 -1.7364 0.2490 16 6 3.3219 -2.6242 -0.6736 17 6 4.4447 -3.4228 -1.4556 18 1 4.1408 -4.3572 -1.9275 19 6 5.5407 -3.5075 -0.3286 20 6 5.5106 -1.9661 -0.0281 21 1 6.2074 -1.6040 0.7279 22 6 5.7130 -1.4150 -1.4735 23 7 5.0464 -2.3958 -2.3568 24 6 4.9878 -2.3652 -3.7245 25 1 4.4668 -3.1449 -4.2603 26 6 5.5980 -1.3319 -4.4223 27 7 6.2333 -0.3819 -3.7694 28 14 5.5186 -1.2905 -6.2882 29 1 4.0998 -1.2275 -6.7221 30 1 6.2431 -0.0944 -6.7880 31 1 6.1503 -2.5169 -6.8379 32 1 -0.3634 -0.9719 0.3339 33 1 -0.3634 0.7752 0.6746 34 1 -0.3634 0.1967 -1.0087 35 1 1.8933 -0.5138 -0.8900 36 1 3.1299 1.4425 0.0126 37 1 1.6869 1.9527 -0.8962 38 1 1.6664 1.9599 0.8837 39 1 2.1649 -0.3446 3.3666 40 1 2.0647 1.1224 2.3634 41 1 0.0363 2.2252 2.2829 42 1 -2.4075 2.2665 2.5812 43 1 -3.6125 0.1983 3.1588 44 1 -2.3748 -1.9131 3.4293 45 1 0.0679 -1.9563 3.1222 46 1 2.6920 -3.3137 -0.1115 47 1 2.7160 -2.0347 -1.3617 48 1 6.5072 -3.8371 -0.7097 49 1 5.2128 -4.1029 0.5237 50 1 6.7753 -1.3536 -1.7099 51 1 5.2461 -0.4353 -1.5755 52 1 6.6600 0.3398 -4.2571 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032624935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:05 Heat of formation + Delta-G solvation = 28.792351 kcal Electronic energy + Delta-G solvation = -31630.199315 eV Core-core repulsion = 27788.483028 eV Total energy + Delta-G solvation = -3841.716287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.88393 -40.73292 -39.38965 -37.22605 -35.43881 -33.36510 -32.98949 -31.79226 -30.94442 -30.13403 -29.85336 -28.11838 -26.96924 -26.16597 -24.97639 -23.39236 -22.36803 -22.25943 -21.42373 -20.60307 -19.80618 -18.76937 -18.01729 -17.41090 -17.35568 -16.99546 -16.44389 -16.17629 -15.86626 -15.69966 -15.51445 -15.05586 -14.85333 -14.37352 -14.20919 -14.06918 -13.94674 -13.68064 -13.58747 -13.44432 -13.40812 -13.22562 -13.10311 -12.84602 -12.78601 -12.66908 -12.46752 -12.31103 -12.17445 -12.11676 -12.07696 -11.93658 -11.86468 -11.78807 -11.54718 -11.52456 -11.34901 -10.83967 -10.59386 -9.64383 -9.50843 -9.30742 -8.89389 -7.83794 -5.19359 0.52630 0.58970 1.46225 1.48837 1.54873 1.64977 2.04229 2.48629 2.96145 3.33037 3.35874 3.51219 3.67608 3.75003 3.80359 3.85471 4.03086 4.05131 4.10750 4.19656 4.23075 4.24679 4.35830 4.38438 4.45193 4.50195 4.61068 4.67282 4.69628 4.72956 4.78151 4.84092 4.89954 4.95133 4.99584 5.00796 5.02997 5.06997 5.14317 5.20443 5.21246 5.26653 5.28616 5.36688 5.44598 5.48891 5.56030 5.65692 5.68096 5.73376 5.81723 6.10127 6.21080 6.71315 7.03268 7.20290 7.71649 8.42414 9.26878 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.003198 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.010304 B = 8752.978608 C = 9409.947841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.076 4.076 5 H 0.111 0.889 6 C -0.059 4.059 7 C -0.072 4.072 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.130 4.130 11 C -0.120 4.120 12 C -0.128 4.128 13 C 0.527 3.473 14 O -0.592 6.592 15 N -0.607 5.607 16 C 0.088 3.912 17 C 0.136 3.864 18 H 0.136 0.864 19 C -0.127 4.127 20 C 0.098 3.902 21 H 0.109 0.891 22 C 0.191 3.809 23 N -0.615 5.615 24 C -0.230 4.230 25 H 0.095 0.905 26 C -0.070 4.070 27 N -0.956 5.956 28 Si 0.975 3.025 29 H -0.276 1.276 30 H -0.304 1.304 31 H -0.274 1.274 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.127 0.873 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.102 0.898 50 H 0.015 0.985 51 H -0.005 1.005 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 -3.944 13.788 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.202 4.202 4 C -0.097 4.097 5 H 0.129 0.871 6 C -0.097 4.097 7 C -0.072 4.072 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.148 4.148 11 C -0.138 4.138 12 C -0.146 4.146 13 C 0.317 3.683 14 O -0.473 6.473 15 N -0.339 5.339 16 C -0.037 4.037 17 C 0.030 3.970 18 H 0.153 0.847 19 C -0.167 4.167 20 C -0.005 4.005 21 H 0.126 0.874 22 C 0.065 3.935 23 N -0.339 5.339 24 C -0.359 4.359 25 H 0.113 0.887 26 C -0.262 4.262 27 N -0.605 5.605 28 Si 0.804 3.196 29 H -0.202 1.202 30 H -0.231 1.231 31 H -0.200 1.200 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.115 0.885 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.120 0.880 50 H 0.033 0.967 51 H 0.014 0.986 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.395 -3.429 14.005 22.594 hybrid contribution 0.904 0.841 -1.406 1.871 sum -16.491 -2.588 12.600 20.914 Atomic orbital electron populations 1.22323 0.92441 1.03528 1.02275 1.20989 0.97654 0.95587 0.95658 1.21896 0.99087 0.96826 1.02353 1.21332 0.89487 1.01774 0.97146 0.87128 1.20382 0.92253 1.00986 0.96056 1.19713 0.94329 0.94298 0.98846 1.21100 0.95047 0.97563 1.00595 1.21357 0.93947 0.99354 0.99636 1.21413 1.00877 0.92676 0.99829 1.21373 0.93938 0.98966 0.99527 1.21150 0.95041 0.97807 1.00554 1.20869 0.91635 0.77427 0.78359 1.90621 1.63674 1.48435 1.44600 1.49221 1.07839 1.40731 1.36101 1.23718 0.95556 0.92699 0.91707 1.24122 0.91320 0.92608 0.88981 0.84668 1.24068 1.00317 0.93036 0.99241 1.24105 0.82992 0.97727 0.95719 0.87357 1.21479 0.94876 0.90746 0.86435 1.45468 1.61744 1.25351 1.01309 1.19485 1.28149 1.06936 0.81327 0.88725 1.25638 1.00931 0.97457 1.02222 1.70159 1.41099 1.14319 1.34924 0.85196 0.77584 0.76578 0.80243 1.20245 1.23056 1.19976 0.91762 0.89626 0.93307 0.92557 0.96235 0.92517 0.90551 0.90999 0.91086 0.86007 0.84572 0.84319 0.84316 0.85512 0.88517 0.92583 0.90150 0.87992 0.96728 0.98635 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 7.86 71.98 0.57 -2.76 16 2 C -0.08 -2.24 2.60 -10.79 -0.03 -2.27 16 3 C -0.14 -4.42 8.38 71.98 0.60 -3.82 16 4 C -0.08 -2.06 1.51 -11.54 -0.02 -2.08 16 5 H 0.11 2.51 7.37 -2.39 -0.02 2.49 16 6 C -0.06 -1.47 3.87 29.85 0.12 -1.36 16 7 C -0.07 -1.44 3.15 -19.86 -0.06 -1.51 16 8 C -0.13 -2.32 6.61 22.27 0.15 -2.18 16 9 C -0.13 -1.94 9.98 22.27 0.22 -1.72 16 10 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 11 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 12 C -0.13 -2.23 8.47 22.27 0.19 -2.04 16 13 C 0.53 18.85 6.24 87.66 0.55 19.40 16 14 O -0.59 -25.22 16.34 -3.02 -0.05 -25.27 16 15 N -0.61 -21.77 2.95 -763.36 -2.25 -24.02 16 16 C 0.09 2.75 5.71 88.06 0.50 3.25 16 17 C 0.14 4.67 5.63 47.95 0.27 4.94 16 18 H 0.14 3.87 8.14 -2.38 -0.02 3.85 16 19 C -0.13 -4.01 6.86 33.59 0.23 -3.78 16 20 C 0.10 3.84 5.19 46.93 0.24 4.09 16 21 H 0.11 4.28 8.04 -2.38 -0.02 4.26 16 22 C 0.19 9.58 4.75 87.16 0.41 10.00 16 23 N -0.61 -29.37 3.02 -643.12 -1.94 -31.31 16 24 C -0.23 -12.15 10.37 84.03 0.87 -11.28 16 25 H 0.10 4.60 7.83 -2.91 -0.02 4.58 16 26 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 27 N -0.96 -58.40 10.56 21.65 0.23 -58.17 16 28 Si 0.98 45.27 29.55 68.60 2.03 47.29 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 30 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 31 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 32 H 0.06 1.31 7.06 -2.39 -0.02 1.29 16 33 H 0.09 1.77 3.66 -2.39 -0.01 1.76 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.88 5.67 -2.39 -0.01 1.86 16 36 H 0.02 0.72 7.46 -2.39 -0.02 0.70 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.99 5.11 -2.38 -0.01 1.98 16 39 H 0.07 1.87 8.03 -2.39 -0.02 1.85 16 40 H 0.07 1.95 5.67 -2.39 -0.01 1.93 16 41 H 0.12 2.18 7.15 -2.91 -0.02 2.16 16 42 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.13 1.96 7.96 -2.91 -0.02 1.94 16 46 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.00 6.14 -2.39 -0.01 1.99 16 48 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 50 H 0.01 0.83 7.46 -2.39 -0.02 0.81 16 51 H 0.00 -0.27 7.67 -2.38 -0.02 -0.29 16 52 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -71.29 390.12 4.65 -66.64 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.91 Total: 24.55 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.73 Total: 0.29 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -3.97 Total: -113.50 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.29 4.65 -66.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032624935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.435 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds