Wall clock time and date at job start Wed Apr 1 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47038 * 239.99500 * 2 1 3 5 5 H 1.08995 * 109.47285 * 306.86694 * 4 2 1 6 6 C 1.53002 * 109.47185 * 66.87224 * 4 2 1 7 7 C 1.50694 * 109.46970 * 292.86313 * 6 4 2 8 8 C 1.38236 * 119.99930 * 296.24036 * 7 6 4 9 9 C 1.38239 * 119.99897 * 179.79273 * 8 7 6 10 10 C 1.38231 * 120.00044 * 0.45327 * 9 8 7 11 11 C 1.38243 * 120.00136 * 359.77547 * 10 9 8 12 12 C 1.38231 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.50710 * 109.46833 * 186.86716 * 4 2 1 14 14 O 1.21273 * 119.99792 * 268.41264 * 13 4 2 15 15 N 1.34778 * 119.99753 * 88.41234 * 13 4 2 16 16 C 1.47866 * 126.94536 * 4.82959 * 15 13 4 17 17 C 1.55991 * 105.11849 * 181.87798 * 16 15 13 18 18 H 1.09000 * 116.81762 * 159.41786 * 17 16 15 19 19 C 1.57085 * 99.47253 * 33.16348 * 17 16 15 20 20 C 1.49283 * 126.94448 * 185.15054 * 15 13 4 21 21 H 1.08997 * 116.15089 * 16.69798 * 20 15 13 22 22 C 1.56015 * 104.09052 * 247.55687 * 20 15 13 23 23 N 1.49291 * 104.31786 * 289.11373 * 17 16 15 24 24 C 1.36930 * 126.94771 * 246.61382 * 23 17 16 25 25 H 1.07998 * 120.00206 * 5.73466 * 24 23 17 26 26 C 1.38810 * 120.00224 * 185.73177 * 24 23 17 27 27 N 1.31621 * 120.00057 * 6.60569 * 26 24 23 28 28 Si 1.86804 * 120.00182 * 186.60096 * 26 24 23 29 29 H 1.48493 * 109.46982 * 94.98944 * 28 26 24 30 30 H 1.48502 * 109.47046 * 214.99184 * 28 26 24 31 31 H 1.48504 * 109.46848 * 334.99021 * 28 26 24 32 32 H 1.08991 * 109.47083 * 281.42267 * 1 2 3 33 33 H 1.08999 * 109.46649 * 41.42776 * 1 2 3 34 34 H 1.09005 * 109.46552 * 161.42089 * 1 2 3 35 35 H 1.09001 * 109.46339 * 119.99687 * 2 1 3 36 36 H 1.09003 * 109.46898 * 308.56608 * 3 2 1 37 37 H 1.09002 * 109.47572 * 68.56880 * 3 2 1 38 38 H 1.08999 * 109.47159 * 188.57289 * 3 2 1 39 39 H 1.08998 * 109.47196 * 52.86376 * 6 4 2 40 40 H 1.09003 * 109.47274 * 172.86436 * 6 4 2 41 41 H 1.07997 * 120.00425 * 359.97438 * 8 7 6 42 42 H 1.07999 * 119.99869 * 180.24966 * 9 8 7 43 43 H 1.07998 * 120.00381 * 179.79466 * 10 9 8 44 44 H 1.07993 * 120.00035 * 179.97438 * 11 10 9 45 45 H 1.08001 * 120.00424 * 179.97438 * 12 11 10 46 46 H 1.09000 * 110.32130 * 300.91342 * 16 15 13 47 47 H 1.08999 * 110.31702 * 63.09493 * 16 15 13 48 48 H 1.09005 * 112.37037 * 191.51238 * 19 17 16 49 49 H 1.09007 * 112.36745 * 64.07763 * 19 17 16 50 50 H 1.08998 * 110.31916 * 47.67653 * 22 20 15 51 51 H 1.09007 * 110.31972 * 169.85664 * 22 20 15 52 52 H 0.97001 * 120.00188 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.5799 -1.7074 -1.3126 6 6 1.6759 0.0925 -2.4925 7 6 0.1796 0.0936 -2.6716 8 6 -0.4875 -1.0911 -2.9211 9 6 -1.8606 -1.0908 -3.0812 10 6 -2.5654 0.0956 -3.0010 11 6 -1.8978 1.2811 -2.7562 12 6 -0.5252 1.2802 -2.5921 13 6 3.5375 -0.8701 -1.1671 14 8 4.2584 -0.0200 -1.6448 15 7 4.0755 -1.9481 -0.5627 16 6 3.3504 -3.1170 -0.0202 17 6 4.4539 -4.0273 0.6019 18 1 4.1293 -4.7552 1.3455 19 6 5.4546 -2.9210 1.0940 20 6 5.5232 -2.2001 -0.2999 21 1 6.1817 -1.3341 -0.3679 22 6 5.8727 -3.4069 -1.2248 23 7 5.1893 -4.5739 -0.5767 24 6 5.2283 -5.8789 -0.9897 25 1 4.6149 -6.6195 -0.4981 26 6 6.0562 -6.2499 -2.0403 27 7 6.8984 -5.3786 -2.5539 28 14 5.9752 -7.9860 -2.7251 29 1 5.0656 -8.0133 -3.8986 30 1 7.3337 -8.4178 -3.1416 31 1 5.4619 -8.9071 -1.6795 32 1 -0.3633 0.2035 1.0072 33 1 -0.3632 0.7705 -0.6800 34 1 -0.3632 -0.9742 -0.3275 35 1 1.8933 -0.5138 0.8901 36 1 1.5570 1.9985 -0.8035 37 1 1.8071 1.9103 0.9566 38 1 3.1192 1.4464 -0.1532 39 1 2.0281 1.1170 -2.3722 40 1 2.1464 -0.3529 -3.3691 41 1 0.0637 -2.0175 -2.9881 42 1 -2.3822 -2.0169 -3.2721 43 1 -3.6378 0.0965 -3.1293 44 1 -2.4484 2.2081 -2.6940 45 1 -0.0035 2.2063 -2.4012 46 1 2.6419 -2.8010 0.7455 47 1 2.8329 -3.6461 -0.8204 48 1 6.4168 -3.3359 1.3943 49 1 5.0235 -2.2865 1.8685 50 1 5.4921 -3.2349 -2.2316 51 1 6.9509 -3.5655 -1.2490 52 1 7.4767 -5.6377 -3.2883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032624936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:09 Heat of formation + Delta-G solvation = 41.348055 kcal Electronic energy + Delta-G solvation = -31404.291393 eV Core-core repulsion = 27563.119562 eV Total energy + Delta-G solvation = -3841.171831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.62008 -39.62830 -38.12459 -36.01989 -33.55875 -32.23479 -31.55800 -31.04602 -29.52937 -28.75383 -28.44240 -27.09898 -25.28383 -24.97631 -23.36885 -22.64357 -21.42003 -20.99190 -19.87368 -19.31963 -18.26058 -17.29478 -16.80020 -16.29211 -16.00137 -15.52304 -15.25412 -15.14230 -14.67464 -14.37466 -13.97707 -13.81141 -13.53031 -13.32955 -13.21972 -13.00523 -12.82162 -12.53526 -12.32231 -12.19379 -12.00204 -11.81740 -11.68246 -11.52810 -11.29895 -11.20408 -11.10949 -11.01801 -10.96010 -10.85891 -10.77628 -10.62081 -10.55187 -10.50539 -10.27068 -10.08088 -9.62915 -9.26707 -8.93555 -8.73023 -8.55412 -7.98497 -6.93159 -5.76171 -3.13009 1.26036 1.29735 3.05378 3.36329 3.39156 3.41327 3.44167 3.70347 4.40684 4.58957 4.64479 4.80826 4.86660 4.88095 4.94867 5.03511 5.05453 5.18501 5.29291 5.30960 5.39011 5.42880 5.47404 5.48297 5.56367 5.57033 5.63668 5.66541 5.78357 5.84541 5.88528 5.88779 5.91375 5.96922 6.02231 6.07927 6.14840 6.20867 6.29453 6.32269 6.37621 6.40256 6.41902 6.42669 6.50997 6.59231 6.59819 6.71019 6.91241 7.38058 7.49021 7.69045 8.06265 8.13694 8.62777 9.05756 9.69908 10.39078 11.34071 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003238 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.989788 B = 8646.197401 C = 9740.450314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.092 4.092 5 H 0.088 0.912 6 C -0.069 4.069 7 C -0.060 4.060 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.130 4.130 11 C -0.122 4.122 12 C -0.117 4.117 13 C 0.533 3.467 14 O -0.554 6.554 15 N -0.606 5.606 16 C 0.085 3.915 17 C 0.142 3.858 18 H 0.106 0.894 19 C -0.151 4.151 20 C 0.098 3.902 21 H 0.110 0.890 22 C 0.171 3.829 23 N -0.599 5.599 24 C -0.231 4.231 25 H 0.080 0.920 26 C -0.006 4.006 27 N -0.917 5.917 28 Si 0.911 3.089 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.280 1.280 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.037 0.963 51 H 0.071 0.929 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.083 12.247 4.936 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.096 4.096 3 C -0.209 4.209 4 C -0.113 4.113 5 H 0.107 0.893 6 C -0.107 4.107 7 C -0.060 4.060 8 C -0.137 4.137 9 C -0.134 4.134 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.135 4.135 13 C 0.321 3.679 14 O -0.433 6.433 15 N -0.339 5.339 16 C -0.040 4.040 17 C 0.033 3.967 18 H 0.124 0.876 19 C -0.190 4.190 20 C -0.005 4.005 21 H 0.128 0.872 22 C 0.046 3.954 23 N -0.323 5.323 24 C -0.359 4.359 25 H 0.097 0.903 26 C -0.203 4.203 27 N -0.564 5.564 28 Si 0.742 3.258 29 H -0.217 1.217 30 H -0.217 1.217 31 H -0.206 1.206 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.071 0.929 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.055 0.945 51 H 0.089 0.911 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.595 12.581 4.440 20.523 hybrid contribution -0.110 -1.082 -0.520 1.205 sum -15.705 11.499 3.920 19.855 Atomic orbital electron populations 1.22394 0.94538 1.02917 1.01824 1.20917 0.96098 0.96457 0.96129 1.21976 1.02334 0.95431 1.01176 1.21374 0.92671 1.00715 0.96538 0.89342 1.20531 0.90771 1.02262 0.97096 1.19863 0.95604 0.93274 0.97246 1.21074 0.94448 0.97951 1.00251 1.21123 0.94252 0.98059 0.99945 1.21083 0.99657 0.92825 1.01212 1.21086 0.94406 0.98018 1.00452 1.20981 0.94204 0.97624 1.00691 1.20087 0.89910 0.80382 0.77488 1.90643 1.62969 1.42001 1.47656 1.49254 1.08878 1.18647 1.57109 1.23250 0.96048 0.86952 0.97774 1.23126 0.90687 0.92438 0.90470 0.87638 1.24160 1.01206 0.98315 0.95362 1.24315 0.81574 0.98185 0.96397 0.87175 1.22332 0.98198 0.82080 0.92759 1.45730 1.56194 1.03768 1.26625 1.19052 1.20059 0.83256 1.13535 0.90265 1.24815 0.98002 0.97972 0.99495 1.69900 1.25109 1.33561 1.27807 0.86119 0.76950 0.83755 0.79024 1.21707 1.21750 1.20568 0.93387 0.90509 0.92538 0.91187 0.92377 0.93052 0.91579 0.89495 0.90365 0.86031 0.86266 0.86498 0.86367 0.86122 0.92868 0.91286 0.89798 0.91773 0.94459 0.91118 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 7.83 37.16 0.29 -1.36 16 2 C -0.08 -0.90 2.67 -90.62 -0.24 -1.14 16 3 C -0.15 -1.76 8.28 37.16 0.31 -1.45 16 4 C -0.09 -1.24 1.71 -91.77 -0.16 -1.40 16 5 H 0.09 1.19 6.47 -51.93 -0.34 0.85 16 6 C -0.07 -0.89 4.06 -27.88 -0.11 -1.01 16 7 C -0.06 -0.67 3.12 -104.62 -0.33 -0.99 16 8 C -0.12 -1.31 8.14 -39.58 -0.32 -1.63 16 9 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 10 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 11 C -0.12 -1.09 10.02 -39.58 -0.40 -1.48 16 12 C -0.12 -1.16 6.87 -39.58 -0.27 -1.43 16 13 C 0.53 9.33 6.31 -10.98 -0.07 9.26 16 14 O -0.55 -11.28 15.66 5.56 0.09 -11.19 16 15 N -0.61 -10.88 2.94 -156.81 -0.46 -11.34 16 16 C 0.09 1.42 5.56 -1.69 -0.01 1.41 16 17 C 0.14 2.59 5.52 -62.56 -0.35 2.24 16 18 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 19 C -0.15 -2.54 6.82 -22.30 -0.15 -2.70 16 20 C 0.10 1.88 5.17 -62.56 -0.32 1.56 16 21 H 0.11 2.08 8.08 -51.93 -0.42 1.66 16 22 C 0.17 4.08 4.99 -0.50 0.00 4.07 16 23 N -0.60 -14.25 3.07 -154.65 -0.47 -14.72 16 24 C -0.23 -6.10 10.36 -15.06 -0.16 -6.26 16 25 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 26 C -0.01 -0.16 5.46 -17.43 -0.10 -0.26 16 27 N -0.92 -26.58 10.67 55.49 0.59 -25.98 16 28 Si 0.91 21.64 29.56 -169.99 -5.02 16.61 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.77 3.75 -51.93 -0.19 0.58 16 34 H 0.06 0.60 6.85 -51.93 -0.36 0.25 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.62 5.78 -51.93 -0.30 0.32 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.93 6.49 -51.93 -0.34 0.59 16 39 H 0.09 1.13 5.78 -51.93 -0.30 0.83 16 40 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 41 H 0.12 1.35 7.77 -52.49 -0.41 0.94 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.06 7.39 -52.49 -0.39 0.67 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 48 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 51 H 0.07 1.88 7.02 -51.92 -0.36 1.51 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -30.73 393.26 -10.98 -41.71 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.44 Total: 4.64 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.18 Total: -5.66 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.34 Total: -52.04 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.73 -10.98 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032624936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.057 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds