Wall clock time and date at job start Wed Apr 1 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47038 * 239.99500 * 2 1 3 5 5 H 1.08995 * 109.47285 * 306.86694 * 4 2 1 6 6 C 1.53002 * 109.47185 * 66.87224 * 4 2 1 7 7 C 1.50694 * 109.46970 * 292.86313 * 6 4 2 8 8 C 1.38236 * 119.99930 * 296.24036 * 7 6 4 9 9 C 1.38239 * 119.99897 * 179.79273 * 8 7 6 10 10 C 1.38231 * 120.00044 * 0.45327 * 9 8 7 11 11 C 1.38243 * 120.00136 * 359.77547 * 10 9 8 12 12 C 1.38231 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.50710 * 109.46833 * 186.86716 * 4 2 1 14 14 O 1.21273 * 119.99792 * 268.41264 * 13 4 2 15 15 N 1.34778 * 119.99753 * 88.41234 * 13 4 2 16 16 C 1.47866 * 126.94536 * 4.82959 * 15 13 4 17 17 C 1.55991 * 105.11849 * 181.87798 * 16 15 13 18 18 H 1.09000 * 116.81762 * 159.41786 * 17 16 15 19 19 C 1.57085 * 99.47253 * 33.16348 * 17 16 15 20 20 C 1.49283 * 126.94448 * 185.15054 * 15 13 4 21 21 H 1.08997 * 116.15089 * 16.69798 * 20 15 13 22 22 C 1.56015 * 104.09052 * 247.55687 * 20 15 13 23 23 N 1.49291 * 104.31786 * 289.11373 * 17 16 15 24 24 C 1.36930 * 126.94771 * 246.61382 * 23 17 16 25 25 H 1.07998 * 120.00206 * 5.73466 * 24 23 17 26 26 C 1.38810 * 120.00224 * 185.73177 * 24 23 17 27 27 N 1.31621 * 120.00057 * 6.60569 * 26 24 23 28 28 Si 1.86804 * 120.00182 * 186.60096 * 26 24 23 29 29 H 1.48493 * 109.46982 * 94.98944 * 28 26 24 30 30 H 1.48502 * 109.47046 * 214.99184 * 28 26 24 31 31 H 1.48504 * 109.46848 * 334.99021 * 28 26 24 32 32 H 1.08991 * 109.47083 * 281.42267 * 1 2 3 33 33 H 1.08999 * 109.46649 * 41.42776 * 1 2 3 34 34 H 1.09005 * 109.46552 * 161.42089 * 1 2 3 35 35 H 1.09001 * 109.46339 * 119.99687 * 2 1 3 36 36 H 1.09003 * 109.46898 * 308.56608 * 3 2 1 37 37 H 1.09002 * 109.47572 * 68.56880 * 3 2 1 38 38 H 1.08999 * 109.47159 * 188.57289 * 3 2 1 39 39 H 1.08998 * 109.47196 * 52.86376 * 6 4 2 40 40 H 1.09003 * 109.47274 * 172.86436 * 6 4 2 41 41 H 1.07997 * 120.00425 * 359.97438 * 8 7 6 42 42 H 1.07999 * 119.99869 * 180.24966 * 9 8 7 43 43 H 1.07998 * 120.00381 * 179.79466 * 10 9 8 44 44 H 1.07993 * 120.00035 * 179.97438 * 11 10 9 45 45 H 1.08001 * 120.00424 * 179.97438 * 12 11 10 46 46 H 1.09000 * 110.32130 * 300.91342 * 16 15 13 47 47 H 1.08999 * 110.31702 * 63.09493 * 16 15 13 48 48 H 1.09005 * 112.37037 * 191.51238 * 19 17 16 49 49 H 1.09007 * 112.36745 * 64.07763 * 19 17 16 50 50 H 1.08998 * 110.31916 * 47.67653 * 22 20 15 51 51 H 1.09007 * 110.31972 * 169.85664 * 22 20 15 52 52 H 0.97001 * 120.00188 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.5799 -1.7074 -1.3126 6 6 1.6759 0.0925 -2.4925 7 6 0.1796 0.0936 -2.6716 8 6 -0.4875 -1.0911 -2.9211 9 6 -1.8606 -1.0908 -3.0812 10 6 -2.5654 0.0956 -3.0010 11 6 -1.8978 1.2811 -2.7562 12 6 -0.5252 1.2802 -2.5921 13 6 3.5375 -0.8701 -1.1671 14 8 4.2584 -0.0200 -1.6448 15 7 4.0755 -1.9481 -0.5627 16 6 3.3504 -3.1170 -0.0202 17 6 4.4539 -4.0273 0.6019 18 1 4.1293 -4.7552 1.3455 19 6 5.4546 -2.9210 1.0940 20 6 5.5232 -2.2001 -0.2999 21 1 6.1817 -1.3341 -0.3679 22 6 5.8727 -3.4069 -1.2248 23 7 5.1893 -4.5739 -0.5767 24 6 5.2283 -5.8789 -0.9897 25 1 4.6149 -6.6195 -0.4981 26 6 6.0562 -6.2499 -2.0403 27 7 6.8984 -5.3786 -2.5539 28 14 5.9752 -7.9860 -2.7251 29 1 5.0656 -8.0133 -3.8986 30 1 7.3337 -8.4178 -3.1416 31 1 5.4619 -8.9071 -1.6795 32 1 -0.3633 0.2035 1.0072 33 1 -0.3632 0.7705 -0.6800 34 1 -0.3632 -0.9742 -0.3275 35 1 1.8933 -0.5138 0.8901 36 1 1.5570 1.9985 -0.8035 37 1 1.8071 1.9103 0.9566 38 1 3.1192 1.4464 -0.1532 39 1 2.0281 1.1170 -2.3722 40 1 2.1464 -0.3529 -3.3691 41 1 0.0637 -2.0175 -2.9881 42 1 -2.3822 -2.0169 -3.2721 43 1 -3.6378 0.0965 -3.1293 44 1 -2.4484 2.2081 -2.6940 45 1 -0.0035 2.2063 -2.4012 46 1 2.6419 -2.8010 0.7455 47 1 2.8329 -3.6461 -0.8204 48 1 6.4168 -3.3359 1.3943 49 1 5.0235 -2.2865 1.8685 50 1 5.4921 -3.2349 -2.2316 51 1 6.9509 -3.5655 -1.2490 52 1 7.4767 -5.6377 -3.2883 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032624936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:08 Heat of formation + Delta-G solvation = 26.146456 kcal Electronic energy + Delta-G solvation = -31404.950584 eV Core-core repulsion = 27563.119562 eV Total energy + Delta-G solvation = -3841.831022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.87960 -40.77267 -39.42357 -37.12406 -35.40612 -33.29213 -33.07061 -31.81123 -31.00657 -30.24745 -29.82923 -27.98259 -26.95835 -26.19738 -24.96625 -23.41442 -22.42315 -22.23772 -21.42258 -20.61319 -19.74437 -18.75309 -18.09003 -17.45818 -17.33847 -16.79589 -16.66839 -16.15931 -15.92048 -15.61980 -15.47802 -15.11604 -14.83846 -14.31903 -14.14817 -14.04933 -13.92443 -13.73937 -13.60092 -13.44189 -13.39017 -13.25162 -13.07936 -12.80957 -12.76506 -12.69646 -12.47457 -12.32779 -12.16128 -12.09613 -12.02130 -11.95570 -11.88663 -11.81303 -11.53561 -11.51947 -11.42998 -10.85261 -10.57975 -9.68141 -9.52712 -9.34609 -8.91395 -7.83164 -5.21564 0.49581 0.55715 1.45537 1.46927 1.55807 1.65829 2.00807 2.47531 2.93170 3.28246 3.34901 3.49999 3.68055 3.75661 3.81778 3.89323 4.02668 4.06295 4.10826 4.20602 4.21971 4.26317 4.36184 4.38106 4.47401 4.54888 4.58956 4.66676 4.69836 4.72243 4.81103 4.86037 4.90999 4.92991 5.01076 5.02664 5.07450 5.10499 5.13383 5.20464 5.23525 5.25473 5.26523 5.41514 5.45615 5.52073 5.52609 5.64611 5.65640 5.70490 5.78949 6.07722 6.18001 6.70038 6.98596 7.20177 7.68887 8.40919 9.25838 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003238 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.989788 B = 8646.197401 C = 9740.450314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.149 4.149 4 C -0.081 4.081 5 H 0.090 0.910 6 C -0.063 4.063 7 C -0.069 4.069 8 C -0.134 4.134 9 C -0.122 4.122 10 C -0.128 4.128 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.527 3.473 14 O -0.588 6.588 15 N -0.610 5.610 16 C 0.094 3.906 17 C 0.136 3.864 18 H 0.135 0.865 19 C -0.128 4.128 20 C 0.100 3.900 21 H 0.110 0.890 22 C 0.183 3.817 23 N -0.618 5.618 24 C -0.229 4.229 25 H 0.094 0.906 26 C -0.072 4.072 27 N -0.955 5.955 28 Si 0.975 3.025 29 H -0.295 1.295 30 H -0.301 1.301 31 H -0.259 1.259 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.111 0.889 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.131 0.869 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.103 0.897 50 H -0.014 1.014 51 H 0.033 0.967 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.730 12.790 7.361 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 C -0.206 4.206 4 C -0.102 4.102 5 H 0.108 0.892 6 C -0.100 4.100 7 C -0.069 4.069 8 C -0.152 4.152 9 C -0.140 4.140 10 C -0.146 4.146 11 C -0.138 4.138 12 C -0.139 4.139 13 C 0.317 3.683 14 O -0.470 6.470 15 N -0.343 5.343 16 C -0.030 4.030 17 C 0.030 3.970 18 H 0.152 0.848 19 C -0.167 4.167 20 C -0.003 4.003 21 H 0.127 0.873 22 C 0.057 3.943 23 N -0.343 5.343 24 C -0.357 4.357 25 H 0.112 0.888 26 C -0.265 4.265 27 N -0.604 5.604 28 Si 0.804 3.196 29 H -0.223 1.223 30 H -0.228 1.228 31 H -0.183 1.183 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.129 0.871 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.148 0.852 46 H 0.117 0.883 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.121 0.879 50 H 0.005 0.995 51 H 0.051 0.949 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -19.294 13.117 6.918 24.335 hybrid contribution 0.977 -1.199 -1.294 2.017 sum -18.317 11.918 5.624 22.565 Atomic orbital electron populations 1.22317 0.92900 1.02914 1.02754 1.20915 0.97248 0.96114 0.94695 1.21937 1.00433 0.95709 1.02491 1.21370 0.89330 1.01348 0.98158 0.89151 1.20407 0.92396 1.01528 0.95709 1.19665 0.94163 0.94146 0.98960 1.21088 0.95274 0.97545 1.01265 1.21330 0.93684 0.99269 0.99682 1.21416 1.00922 0.92357 0.99907 1.21396 0.93985 0.99133 0.99271 1.21125 0.94888 0.97341 1.00496 1.20875 0.91541 0.79611 0.76249 1.90620 1.64210 1.43277 1.48849 1.49345 1.08230 1.19281 1.57414 1.23153 0.95772 0.85979 0.98116 1.23551 0.90909 0.93312 0.89255 0.84753 1.24052 1.00801 0.97495 0.94376 1.24119 0.82772 0.96451 0.96984 0.87251 1.21922 0.95805 0.84804 0.91738 1.45985 1.56771 1.03020 1.28505 1.19537 1.18748 0.84690 1.12771 0.88791 1.25654 0.98541 1.01614 1.00660 1.70142 1.26488 1.35402 1.28402 0.85102 0.76105 0.80011 0.78408 1.22260 1.22774 1.18343 0.91951 0.90209 0.92868 0.90924 0.91656 0.91209 0.94426 0.89840 0.93103 0.87119 0.84926 0.84118 0.83891 0.85157 0.88336 0.93082 0.90371 0.87890 0.99548 0.94889 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 7.83 71.99 0.56 -2.11 16 2 C -0.07 -1.51 2.67 -10.79 -0.03 -1.53 16 3 C -0.15 -3.19 8.28 71.98 0.60 -2.60 16 4 C -0.08 -2.16 1.71 -11.54 -0.02 -2.18 16 5 H 0.09 2.38 6.47 -2.39 -0.02 2.37 16 6 C -0.06 -1.65 4.06 29.85 0.12 -1.53 16 7 C -0.07 -1.49 3.12 -19.87 -0.06 -1.55 16 8 C -0.13 -2.84 8.14 22.27 0.18 -2.66 16 9 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 10 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 11 C -0.12 -1.75 10.02 22.27 0.22 -1.53 16 12 C -0.12 -2.13 6.87 22.27 0.15 -1.97 16 13 C 0.53 18.74 6.31 87.66 0.55 19.30 16 14 O -0.59 -24.98 15.66 -3.01 -0.05 -25.03 16 15 N -0.61 -21.84 2.94 -768.42 -2.26 -24.10 16 16 C 0.09 2.95 5.56 87.15 0.48 3.43 16 17 C 0.14 4.69 5.52 46.92 0.26 4.95 16 18 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 19 C -0.13 -4.06 6.82 33.46 0.23 -3.83 16 20 C 0.10 3.92 5.17 46.93 0.24 4.16 16 21 H 0.11 4.28 8.08 -2.39 -0.02 4.26 16 22 C 0.18 9.25 4.99 86.75 0.43 9.68 16 23 N -0.62 -29.81 3.07 -643.18 -1.97 -31.78 16 24 C -0.23 -12.16 10.36 84.03 0.87 -11.29 16 25 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 26 C -0.07 -4.07 5.46 84.86 0.46 -3.60 16 27 N -0.96 -58.54 10.67 21.65 0.23 -58.31 16 28 Si 0.97 45.54 29.56 68.60 2.03 47.57 16 29 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 30 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 31 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.37 3.75 -2.39 -0.01 1.36 16 34 H 0.05 0.99 6.85 -2.38 -0.02 0.97 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.28 5.78 -2.39 -0.01 1.27 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 1.03 6.49 -2.39 -0.02 1.01 16 39 H 0.08 2.21 5.78 -2.39 -0.01 2.20 16 40 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 41 H 0.11 2.50 7.77 -2.91 -0.02 2.48 16 42 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 45 H 0.13 2.00 7.39 -2.91 -0.02 1.97 16 46 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 48 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 49 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 50 H -0.01 -0.82 8.09 -2.39 -0.02 -0.84 16 51 H 0.03 1.89 7.02 -2.38 -0.02 1.88 16 52 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -71.60 393.26 4.59 -67.01 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.90 Total: 23.06 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 5.71 Total: 1.58 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -4.00 Total: -114.19 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -71.60 4.59 -67.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032624936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.156 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds