Wall clock time and date at job start Wed Apr 1 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00080 * 2 1 3 5 5 C 1.50697 * 109.47126 * 120.00244 * 2 1 3 6 6 C 1.38230 * 120.00365 * 59.99632 * 5 2 1 7 7 C 1.38235 * 120.00326 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00196 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46655 * 90.00209 * 9 8 7 11 11 O 1.21274 * 120.00126 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99437 * 180.02562 * 10 9 8 13 13 C 1.47865 * 126.94914 * 0.02562 * 12 10 9 14 14 C 1.56018 * 105.10699 * 181.98132 * 13 12 10 15 15 H 1.09003 * 116.24710 * 158.83620 * 14 13 12 16 16 C 1.57083 * 99.60567 * 32.81032 * 14 13 12 17 17 C 1.49294 * 126.94017 * 179.71119 * 12 10 9 18 18 H 1.08998 * 116.15217 * 16.72444 * 17 12 10 19 19 C 1.56021 * 104.09021 * 246.71638 * 17 12 10 20 20 N 1.47364 * 105.14895 * 288.60895 * 19 17 12 21 21 C 1.36931 * 126.78935 * 182.06439 * 20 19 17 22 22 H 1.08002 * 119.99775 * 180.28655 * 21 20 19 23 23 C 1.38812 * 120.00182 * 0.28108 * 21 20 19 24 24 N 1.31618 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00085 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47334 * 90.00091 * 25 23 21 27 27 H 1.48502 * 109.47376 * 209.99752 * 25 23 21 28 28 H 1.48502 * 109.47441 * 329.99778 * 25 23 21 29 29 C 1.38239 * 120.00062 * 0.02871 * 8 7 6 30 30 C 1.38234 * 119.99750 * 240.02366 * 5 2 1 31 31 H 1.08993 * 109.46771 * 299.99735 * 1 2 3 32 32 H 1.08992 * 109.46905 * 60.00068 * 1 2 3 33 33 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47224 * 299.99729 * 3 2 1 36 36 H 1.08997 * 109.47234 * 59.99754 * 3 2 1 37 37 H 1.09005 * 109.47128 * 299.99971 * 4 2 1 38 38 H 1.09002 * 109.47176 * 59.99372 * 4 2 1 39 39 H 1.08993 * 109.47162 * 179.97438 * 4 2 1 40 40 H 1.08000 * 120.00356 * 0.02562 * 6 5 2 41 41 H 1.08000 * 120.00616 * 179.70664 * 7 6 5 42 42 H 1.08998 * 109.47268 * 210.00355 * 9 8 7 43 43 H 1.08998 * 109.47151 * 330.00502 * 9 8 7 44 44 H 1.08996 * 110.31793 * 300.89231 * 13 12 10 45 45 H 1.09002 * 110.31308 * 63.07076 * 13 12 10 46 46 H 1.08994 * 112.36685 * 64.27148 * 16 14 13 47 47 H 1.08996 * 112.36596 * 191.63021 * 16 14 13 48 48 H 1.08999 * 110.31268 * 47.67472 * 19 17 12 49 49 H 1.08997 * 110.31730 * 169.86216 * 19 17 12 50 50 H 0.96998 * 120.00408 * 180.02562 * 24 23 21 51 51 H 1.08005 * 120.00103 * 179.97438 * 29 8 7 52 52 H 1.08000 * 120.00029 * 359.97337 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6985 -2.0338 1.4492 7 6 2.1588 -2.6854 2.5781 8 6 2.9536 -2.0136 3.4880 9 6 3.4551 -2.7236 4.7191 10 6 4.7824 -3.3715 4.4196 11 8 5.2730 -3.2665 3.3155 12 7 5.4241 -4.0675 5.3789 13 6 4.9701 -4.2927 6.7680 14 6 6.1144 -5.1116 7.4420 15 1 6.1537 -5.0788 8.5309 16 6 7.3497 -4.5140 6.6776 17 6 6.7340 -4.7725 5.2517 18 1 7.3493 -4.4923 4.3968 19 6 6.3679 -6.2825 5.3934 20 7 6.0144 -6.4616 6.8127 21 6 5.6602 -7.6324 7.4282 22 1 5.4168 -7.6371 8.4804 23 6 5.6139 -8.8131 6.6998 24 7 5.9110 -8.8074 5.4176 25 14 5.1301 -10.4101 7.5392 26 1 3.6585 -10.5894 7.4516 27 1 5.8081 -11.5477 6.8674 28 1 5.5389 -10.3630 8.9661 29 6 3.2876 -0.6901 3.2693 30 6 2.8267 -0.0385 2.1406 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 -1.7490 -1.2493 38 1 1.6767 -0.2075 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 1.0779 -2.5589 0.7382 41 1 1.8940 -3.7179 2.7515 42 1 3.5762 -2.0046 5.5293 43 1 2.7366 -3.4877 5.0159 44 1 4.8336 -3.3405 7.2806 45 1 4.0415 -4.8635 6.7748 46 1 7.4925 -3.4536 6.8850 47 1 8.2601 -5.0890 6.8471 48 1 5.5184 -6.5273 4.7559 49 1 7.2254 -6.9053 5.1384 50 1 5.8783 -9.6323 4.9084 51 1 3.9082 -0.1651 3.9804 52 1 3.0877 0.9955 1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032652680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:40 Heat of formation + Delta-G solvation = 33.083143 kcal Electronic energy + Delta-G solvation = -29993.905587 eV Core-core repulsion = 26152.375362 eV Total energy + Delta-G solvation = -3841.530225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.27003 -39.74606 -37.95853 -36.40550 -33.63647 -32.16899 -31.27437 -31.06382 -29.10550 -28.57671 -27.56792 -27.43903 -27.00940 -25.20286 -23.54413 -22.32018 -22.24760 -20.45421 -19.83266 -19.24227 -18.40258 -17.18856 -16.62031 -16.24789 -15.77987 -15.52833 -14.93345 -14.82301 -14.48041 -14.40939 -14.01850 -13.94121 -13.77688 -13.45444 -13.21066 -13.17755 -12.79684 -12.33531 -12.22569 -12.02932 -11.97678 -11.89077 -11.79807 -11.77033 -11.61314 -11.35626 -11.30991 -11.11909 -11.01032 -10.85458 -10.80089 -10.67654 -10.57336 -10.55523 -10.26107 -10.08960 -9.66054 -9.43683 -8.79943 -8.72465 -8.41623 -7.97187 -6.94343 -5.78077 -3.13158 1.39696 1.52235 3.09867 3.35732 3.40528 3.40913 3.43326 3.89095 4.40353 4.43402 4.57203 4.79957 4.83688 4.91193 4.96521 5.07036 5.12235 5.18422 5.23200 5.30370 5.35972 5.40991 5.43904 5.48942 5.54691 5.55285 5.60849 5.64429 5.65385 5.66574 5.72191 5.77117 5.81204 5.86176 5.91931 6.05001 6.08786 6.11261 6.15582 6.19705 6.28437 6.41406 6.49242 6.53075 6.59015 6.66768 6.69943 6.71776 7.09063 7.42079 7.49440 7.71322 8.08912 8.14203 8.65124 9.09414 9.69740 10.38663 11.33557 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002327 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.564375 B =12031.290942 C =12740.258100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.076 4.076 6 C -0.114 4.114 7 C -0.101 4.101 8 C -0.061 4.061 9 C -0.099 4.099 10 C 0.529 3.471 11 O -0.547 6.547 12 N -0.609 5.609 13 C 0.083 3.917 14 C 0.141 3.859 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.112 0.888 19 C 0.176 3.824 20 N -0.597 5.597 21 C -0.233 4.233 22 H 0.081 0.919 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.104 4.104 30 C -0.122 4.122 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.046 0.954 49 H 0.055 0.945 50 H 0.254 0.746 51 H 0.117 0.883 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 19.409 -5.479 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.119 4.119 8 C -0.061 4.061 9 C -0.138 4.138 10 C 0.317 3.683 11 O -0.426 6.426 12 N -0.343 5.343 13 C -0.042 4.042 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.192 4.192 17 C -0.004 4.004 18 H 0.130 0.870 19 C 0.051 3.949 20 N -0.321 5.321 21 C -0.360 4.360 22 H 0.098 0.902 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.122 4.122 30 C -0.140 4.140 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.135 0.865 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.735 19.214 -6.197 21.620 hybrid contribution -0.324 -1.058 0.437 1.189 sum -8.059 18.156 -5.761 20.683 Atomic orbital electron populations 1.21882 0.93857 1.02058 1.01653 1.19483 0.95542 0.94960 0.92927 1.21954 1.01301 0.95053 1.01710 1.21892 1.01473 1.00243 0.95995 1.19721 0.98102 0.94114 0.95666 1.20863 1.00673 0.94254 0.97422 1.20985 0.97472 0.99421 0.94036 1.19316 0.97200 0.93860 0.95746 1.20647 0.95726 1.00508 0.96969 1.19988 0.85932 0.78515 0.83836 1.90682 1.68025 1.61712 1.22150 1.49247 1.22185 1.50858 1.11969 1.23296 1.00508 0.98670 0.81770 1.23158 0.91178 0.86142 0.96337 0.87607 1.24221 0.99130 0.99629 0.96204 1.24411 0.83729 0.94871 0.97413 0.87008 1.21811 0.99721 0.87693 0.85703 1.45115 1.79755 1.01976 1.05233 1.19045 1.39599 0.83898 0.93499 0.90150 1.24831 1.01657 0.97888 0.95915 1.69924 1.54004 1.26416 1.06189 0.86115 0.78012 0.83204 0.78354 1.21621 1.21679 1.20625 1.20932 0.99236 0.94267 0.97773 1.21049 0.98591 0.99970 0.94353 0.92558 0.92530 0.92414 0.92222 0.92554 0.92321 0.92375 0.92546 0.92368 0.86414 0.86242 0.88542 0.88256 0.92854 0.91118 0.91690 0.89864 0.93601 0.92659 0.93569 0.86497 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 3 C -0.14 -1.12 7.13 37.16 0.26 -0.85 16 4 C -0.14 -1.24 8.29 37.16 0.31 -0.93 16 5 C -0.08 -0.88 4.76 -104.63 -0.50 -1.38 16 6 C -0.11 -1.42 8.71 -39.59 -0.34 -1.77 16 7 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 8 C -0.06 -0.86 4.37 -104.62 -0.46 -1.32 16 9 C -0.10 -1.38 5.12 -29.03 -0.15 -1.53 16 10 C 0.53 9.66 7.89 -10.98 -0.09 9.58 16 11 O -0.55 -11.89 16.38 5.56 0.09 -11.80 16 12 N -0.61 -11.15 2.95 -156.55 -0.46 -11.61 16 13 C 0.08 1.38 6.00 -1.68 -0.01 1.37 16 14 C 0.14 2.56 5.53 -62.56 -0.35 2.21 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.15 -2.57 6.84 -22.09 -0.15 -2.72 16 17 C 0.10 1.92 5.25 -62.34 -0.33 1.59 16 18 H 0.11 2.16 8.06 -51.93 -0.42 1.74 16 19 C 0.18 4.23 4.74 -1.95 -0.01 4.22 16 20 N -0.60 -14.22 3.01 -156.75 -0.47 -14.69 16 21 C -0.23 -6.13 10.37 -15.06 -0.16 -6.28 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -26.73 10.53 55.49 0.58 -26.14 16 25 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 29 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 30 C -0.12 -1.44 8.98 -39.58 -0.36 -1.79 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 34 H 0.06 0.48 7.52 -51.93 -0.39 0.09 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 37 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.12 1.27 7.10 -52.49 -0.37 0.89 16 41 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 43 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 48 H 0.05 1.27 7.68 -51.93 -0.40 0.88 16 49 H 0.06 1.47 7.42 -51.93 -0.39 1.09 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 52 H 0.12 1.19 5.90 -52.49 -0.31 0.88 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -32.07 407.56 -11.04 -43.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -8.89 Total: 3.02 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.01 Total: -4.58 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.35 Total: -52.44 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.07 -11.04 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032652680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.185 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds