Wall clock time and date at job start Wed Apr 1 2020 01:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47010 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00080 * 2 1 3 5 5 C 1.50697 * 109.47126 * 120.00244 * 2 1 3 6 6 C 1.38230 * 120.00365 * 59.99632 * 5 2 1 7 7 C 1.38235 * 120.00326 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00196 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46655 * 90.00209 * 9 8 7 11 11 O 1.21274 * 120.00126 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99437 * 180.02562 * 10 9 8 13 13 C 1.47865 * 126.94914 * 0.02562 * 12 10 9 14 14 C 1.56018 * 105.10699 * 181.98132 * 13 12 10 15 15 H 1.09003 * 116.24710 * 158.83620 * 14 13 12 16 16 C 1.57083 * 99.60567 * 32.81032 * 14 13 12 17 17 C 1.49294 * 126.94017 * 179.71119 * 12 10 9 18 18 H 1.08998 * 116.15217 * 16.72444 * 17 12 10 19 19 C 1.56021 * 104.09021 * 246.71638 * 17 12 10 20 20 N 1.47364 * 105.14895 * 288.60895 * 19 17 12 21 21 C 1.36931 * 126.78935 * 182.06439 * 20 19 17 22 22 H 1.08002 * 119.99775 * 180.28655 * 21 20 19 23 23 C 1.38812 * 120.00182 * 0.28108 * 21 20 19 24 24 N 1.31618 * 120.00022 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00085 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47334 * 90.00091 * 25 23 21 27 27 H 1.48502 * 109.47376 * 209.99752 * 25 23 21 28 28 H 1.48502 * 109.47441 * 329.99778 * 25 23 21 29 29 C 1.38239 * 120.00062 * 0.02871 * 8 7 6 30 30 C 1.38234 * 119.99750 * 240.02366 * 5 2 1 31 31 H 1.08993 * 109.46771 * 299.99735 * 1 2 3 32 32 H 1.08992 * 109.46905 * 60.00068 * 1 2 3 33 33 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46836 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47224 * 299.99729 * 3 2 1 36 36 H 1.08997 * 109.47234 * 59.99754 * 3 2 1 37 37 H 1.09005 * 109.47128 * 299.99971 * 4 2 1 38 38 H 1.09002 * 109.47176 * 59.99372 * 4 2 1 39 39 H 1.08993 * 109.47162 * 179.97438 * 4 2 1 40 40 H 1.08000 * 120.00356 * 0.02562 * 6 5 2 41 41 H 1.08000 * 120.00616 * 179.70664 * 7 6 5 42 42 H 1.08998 * 109.47268 * 210.00355 * 9 8 7 43 43 H 1.08998 * 109.47151 * 330.00502 * 9 8 7 44 44 H 1.08996 * 110.31793 * 300.89231 * 13 12 10 45 45 H 1.09002 * 110.31308 * 63.07076 * 13 12 10 46 46 H 1.08994 * 112.36685 * 64.27148 * 16 14 13 47 47 H 1.08996 * 112.36596 * 191.63021 * 16 14 13 48 48 H 1.08999 * 110.31268 * 47.67472 * 19 17 12 49 49 H 1.08997 * 110.31730 * 169.86216 * 19 17 12 50 50 H 0.96998 * 120.00408 * 180.02562 * 24 23 21 51 51 H 1.08005 * 120.00103 * 179.97438 * 29 8 7 52 52 H 1.08000 * 120.00029 * 359.97337 * 30 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6985 -2.0338 1.4492 7 6 2.1588 -2.6854 2.5781 8 6 2.9536 -2.0136 3.4880 9 6 3.4551 -2.7236 4.7191 10 6 4.7824 -3.3715 4.4196 11 8 5.2730 -3.2665 3.3155 12 7 5.4241 -4.0675 5.3789 13 6 4.9701 -4.2927 6.7680 14 6 6.1144 -5.1116 7.4420 15 1 6.1537 -5.0788 8.5309 16 6 7.3497 -4.5140 6.6776 17 6 6.7340 -4.7725 5.2517 18 1 7.3493 -4.4923 4.3968 19 6 6.3679 -6.2825 5.3934 20 7 6.0144 -6.4616 6.8127 21 6 5.6602 -7.6324 7.4282 22 1 5.4168 -7.6371 8.4804 23 6 5.6139 -8.8131 6.6998 24 7 5.9110 -8.8074 5.4176 25 14 5.1301 -10.4101 7.5392 26 1 3.6585 -10.5894 7.4516 27 1 5.8081 -11.5477 6.8674 28 1 5.5389 -10.3630 8.9661 29 6 3.2876 -0.6901 3.2693 30 6 2.8267 -0.0385 2.1406 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1301 1.4425 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 -1.7490 -1.2493 38 1 1.6767 -0.2075 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 1.0779 -2.5589 0.7382 41 1 1.8940 -3.7179 2.7515 42 1 3.5762 -2.0046 5.5293 43 1 2.7366 -3.4877 5.0159 44 1 4.8336 -3.3405 7.2806 45 1 4.0415 -4.8635 6.7748 46 1 7.4925 -3.4536 6.8850 47 1 8.2601 -5.0890 6.8471 48 1 5.5184 -6.5273 4.7559 49 1 7.2254 -6.9053 5.1384 50 1 5.8783 -9.6323 4.9084 51 1 3.9082 -0.1651 3.9804 52 1 3.0877 0.9955 1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032652680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:39 Heat of formation + Delta-G solvation = 17.023172 kcal Electronic energy + Delta-G solvation = -29994.601999 eV Core-core repulsion = 26152.375362 eV Total energy + Delta-G solvation = -3842.226637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64867 -40.81878 -39.36655 -37.32596 -35.46485 -33.58086 -32.68516 -32.00146 -30.73297 -30.24601 -28.24575 -28.09839 -28.08650 -26.98131 -25.18624 -23.37688 -23.26389 -21.89808 -21.40883 -20.10423 -19.95022 -18.83532 -17.92907 -17.58147 -17.21150 -16.76378 -16.30345 -15.97998 -15.82283 -15.66580 -15.12661 -15.05623 -14.85752 -14.63490 -14.51201 -14.27482 -13.84892 -13.63594 -13.49923 -13.35984 -13.12371 -13.07541 -12.93379 -12.81424 -12.78186 -12.69545 -12.56855 -12.53724 -12.30238 -12.20304 -12.12094 -12.04666 -11.87478 -11.81336 -11.53944 -11.49481 -11.34641 -10.96169 -10.70657 -9.77797 -9.50973 -9.40494 -8.91326 -7.84659 -5.20956 0.41131 0.54245 1.46252 1.47604 1.56367 1.67607 2.05232 2.48126 2.86888 3.32833 3.39596 3.62912 3.68514 3.80238 3.81236 3.91433 3.95545 4.05426 4.08273 4.13005 4.15363 4.22054 4.39667 4.40712 4.51636 4.59582 4.62776 4.70281 4.71534 4.78497 4.84239 4.85654 4.90725 4.95650 5.01142 5.02851 5.03789 5.06497 5.14896 5.17284 5.19510 5.24610 5.26936 5.38586 5.44481 5.45404 5.54218 5.59937 5.65264 5.70744 5.76287 6.10164 6.14379 6.70727 7.03110 7.21539 7.71243 8.41252 9.26089 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002327 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.564375 B =12031.290942 C =12740.258100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.030 4.030 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.081 4.081 9 C -0.087 4.087 10 C 0.523 3.477 11 O -0.589 6.589 12 N -0.611 5.611 13 C 0.090 3.910 14 C 0.135 3.865 15 H 0.138 0.862 16 C -0.129 4.129 17 C 0.099 3.901 18 H 0.108 0.892 19 C 0.190 3.810 20 N -0.616 5.616 21 C -0.229 4.229 22 H 0.097 0.903 23 C -0.074 4.074 24 N -0.959 5.959 25 Si 0.977 3.023 26 H -0.290 1.290 27 H -0.303 1.303 28 H -0.261 1.261 29 C -0.112 4.112 30 C -0.127 4.127 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.078 0.922 48 H -0.007 1.007 49 H 0.015 0.985 50 H 0.243 0.757 51 H 0.133 0.867 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 22.540 -3.628 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.196 4.196 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.082 4.082 9 C -0.126 4.126 10 C 0.314 3.686 11 O -0.471 6.471 12 N -0.345 5.345 13 C -0.034 4.034 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.168 4.168 17 C -0.005 4.005 18 H 0.126 0.874 19 C 0.064 3.936 20 N -0.341 5.341 21 C -0.357 4.357 22 H 0.115 0.885 23 C -0.266 4.266 24 N -0.608 5.608 25 Si 0.806 3.194 26 H -0.218 1.218 27 H -0.230 1.230 28 H -0.185 1.185 29 C -0.130 4.130 30 C -0.144 4.144 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.096 0.904 48 H 0.011 0.989 49 H 0.033 0.967 50 H 0.052 0.948 51 H 0.151 0.849 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.531 22.391 -4.279 24.341 hybrid contribution -0.088 -1.981 -0.182 1.992 sum -8.619 20.410 -4.461 22.600 Atomic orbital electron populations 1.21863 0.92853 1.02060 1.02426 1.19559 0.96321 0.95518 0.91598 1.21947 1.01038 0.94128 1.02764 1.21896 1.00643 1.00223 0.96842 1.20074 0.97352 0.93795 0.96454 1.21056 1.00901 0.94994 0.97199 1.21126 0.98587 0.99403 0.95128 1.19442 0.97978 0.94639 0.96130 1.20630 0.92870 1.01021 0.98090 1.20784 0.86869 0.77991 0.82996 1.90656 1.69264 1.63304 1.23831 1.49344 1.21706 1.50424 1.12998 1.23247 0.98685 1.00697 0.80785 1.23607 0.92368 0.83104 0.98085 0.84467 1.24116 0.98039 1.01771 0.92862 1.24199 0.85138 0.91647 0.99495 0.87373 1.21378 0.96010 0.90552 0.85682 1.45380 1.79512 1.03821 1.05363 1.19558 1.37212 0.84789 0.94177 0.88488 1.25691 1.03051 1.01383 0.96507 1.70178 1.56506 1.26265 1.07848 0.85082 0.77150 0.78989 0.78140 1.21760 1.22983 1.18518 1.21200 0.99287 0.93945 0.98564 1.21380 0.98085 1.01038 0.93909 0.92585 0.90937 0.92857 0.92648 0.91085 0.91744 0.93020 0.90714 0.93641 0.85441 0.87108 0.85141 0.87798 0.87569 0.92823 0.87752 0.90359 0.98875 0.96696 0.94803 0.84869 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.29 71.99 0.60 -1.29 16 2 C -0.03 -0.49 0.85 -52.93 -0.05 -0.54 16 3 C -0.14 -1.88 7.13 71.98 0.51 -1.36 16 4 C -0.14 -2.32 8.29 71.98 0.60 -1.73 16 5 C -0.08 -1.70 4.76 -19.87 -0.09 -1.79 16 6 C -0.12 -3.10 8.71 22.27 0.19 -2.90 16 7 C -0.12 -3.57 9.70 22.27 0.22 -3.35 16 8 C -0.08 -2.27 4.37 -19.86 -0.09 -2.35 16 9 C -0.09 -2.31 5.12 29.10 0.15 -2.16 16 10 C 0.52 18.86 7.89 87.66 0.69 19.55 16 11 O -0.59 -26.11 16.38 -3.01 -0.05 -26.16 16 12 N -0.61 -21.76 2.95 -767.61 -2.26 -24.02 16 13 C 0.09 2.71 6.00 87.16 0.52 3.24 16 14 C 0.13 4.52 5.53 46.93 0.26 4.78 16 15 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 16 C -0.13 -4.00 6.84 33.60 0.23 -3.77 16 17 C 0.10 3.87 5.25 47.07 0.25 4.12 16 18 H 0.11 4.30 8.06 -2.39 -0.02 4.28 16 19 C 0.19 9.62 4.74 87.26 0.41 10.03 16 20 N -0.62 -29.47 3.01 -649.82 -1.95 -31.42 16 21 C -0.23 -12.05 10.37 84.03 0.87 -11.18 16 22 H 0.10 4.69 7.83 -2.91 -0.02 4.66 16 23 C -0.07 -4.16 5.49 84.86 0.47 -3.70 16 24 N -0.96 -58.99 10.53 21.65 0.23 -58.76 16 25 Si 0.98 45.33 29.55 68.60 2.03 47.35 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 29 C -0.11 -2.74 9.70 22.27 0.22 -2.53 16 30 C -0.13 -2.79 8.98 22.27 0.20 -2.59 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.79 7.39 -2.39 -0.02 0.77 16 34 H 0.05 0.78 7.52 -2.39 -0.02 0.77 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.78 7.51 -2.39 -0.02 0.76 16 37 H 0.05 0.91 7.39 -2.38 -0.02 0.90 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.13 2.79 7.10 -2.91 -0.02 2.77 16 41 H 0.11 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.13 2.53 8.09 -2.39 -0.02 2.51 16 43 H 0.10 2.66 8.09 -2.39 -0.02 2.64 16 44 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 48 H -0.01 -0.42 7.68 -2.39 -0.02 -0.44 16 49 H 0.01 0.86 7.42 -2.39 -0.02 0.84 16 50 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 52 H 0.14 2.47 5.90 -2.91 -0.02 2.45 16 Total: -1.00 -74.79 407.56 5.03 -69.76 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.88 Total: 22.78 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 6.16 Total: 0.47 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.99 Total: -114.21 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.79 5.03 -69.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032652680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.786 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds