Wall clock time and date at job start Wed Apr 1 2020 02:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 H 1.08996 * 109.46594 * 175.67598 * 3 2 1 5 5 C 1.52999 * 109.46901 * 295.67042 * 3 2 1 6 6 C 1.50698 * 109.47581 * 296.49350 * 5 3 2 7 7 C 1.38259 * 119.99694 * 275.65184 * 6 5 3 8 8 C 1.38219 * 119.99877 * 179.80828 * 7 6 5 9 9 C 1.38253 * 119.99652 * 0.39307 * 8 7 6 10 10 C 1.38219 * 120.00317 * 359.85856 * 9 8 7 11 11 C 1.50697 * 120.00149 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.00139 * 95.91589 * 6 5 3 13 13 C 1.50697 * 109.47111 * 55.67192 * 3 2 1 14 14 O 1.21283 * 119.99765 * 263.88832 * 13 3 2 15 15 N 1.34776 * 120.00011 * 83.88767 * 13 3 2 16 16 C 1.47865 * 126.94218 * 4.64317 * 15 13 3 17 17 C 1.56026 * 105.10296 * 181.97682 * 16 15 13 18 18 H 1.08997 * 116.25036 * 158.83689 * 17 16 15 19 19 C 1.57081 * 99.60251 * 32.80656 * 17 16 15 20 20 C 1.49291 * 126.94147 * 184.32772 * 15 13 3 21 21 H 1.08993 * 116.15401 * 16.72981 * 20 15 13 22 22 C 1.56026 * 104.09186 * 246.71988 * 20 15 13 23 23 N 1.47357 * 105.14722 * 288.61024 * 22 20 15 24 24 C 1.36938 * 126.78850 * 182.06081 * 23 22 20 25 25 H 1.08008 * 120.00066 * 180.28437 * 24 23 22 26 26 C 1.38811 * 120.00005 * 0.28191 * 24 23 22 27 27 N 1.31621 * 120.00028 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00063 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46779 * 90.00166 * 28 26 24 30 30 H 1.48493 * 109.47268 * 210.00029 * 28 26 24 31 31 H 1.48499 * 109.47055 * 330.00485 * 28 26 24 32 32 H 1.08994 * 109.47410 * 296.05386 * 1 2 3 33 33 H 1.09002 * 109.47633 * 56.05331 * 1 2 3 34 34 H 1.09004 * 109.47456 * 176.04972 * 1 2 3 35 35 H 1.09001 * 109.46895 * 240.00306 * 2 1 3 36 36 H 1.08995 * 109.46719 * 119.99853 * 2 1 3 37 37 H 1.08996 * 109.47421 * 56.49425 * 5 3 2 38 38 H 1.08997 * 109.46651 * 176.49222 * 5 3 2 39 39 H 1.07999 * 120.00160 * 359.97438 * 7 6 5 40 40 H 1.08000 * 119.99920 * 180.22817 * 8 7 6 41 41 H 1.08011 * 119.99755 * 179.83621 * 9 8 7 42 42 H 1.08996 * 109.46816 * 269.98002 * 11 10 9 43 43 H 1.09009 * 109.46952 * 29.97882 * 11 10 9 44 44 H 1.08999 * 109.47242 * 149.97094 * 11 10 9 45 45 H 1.08001 * 119.99975 * 359.97438 * 12 6 5 46 46 H 1.08999 * 110.31853 * 300.88443 * 16 15 13 47 47 H 1.09001 * 110.31643 * 62.97655 * 16 15 13 48 48 H 1.09004 * 112.37072 * 64.27890 * 19 17 16 49 49 H 1.09002 * 112.36809 * 191.61915 * 19 17 16 50 50 H 1.08998 * 110.31037 * 47.67668 * 22 20 15 51 51 H 1.08996 * 110.31185 * 169.86005 * 22 20 15 52 52 H 0.96996 * 119.99601 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1272 1.4435 0.0775 5 6 1.6208 2.1316 -1.3001 6 6 2.2782 1.4431 -2.4683 7 6 3.5642 1.7888 -2.8401 8 6 4.1687 1.1545 -3.9091 9 6 3.4843 0.1800 -4.6115 10 6 2.1968 -0.1619 -4.2431 11 6 1.4506 -1.2237 -5.0092 12 6 1.5936 0.4698 -3.1714 13 6 1.4520 2.1832 1.1733 14 8 0.4572 2.8611 1.0257 15 7 2.0316 2.0923 2.3867 16 6 3.2916 1.3938 2.7196 17 6 3.4567 1.5659 4.2615 18 1 4.1066 0.8467 4.7600 19 6 1.9453 1.5592 4.6892 20 6 1.5345 2.6820 3.6649 21 1 0.4902 2.9938 3.6761 22 6 2.5985 3.7657 4.0224 23 7 3.7954 3.0098 4.4319 24 6 4.9821 3.5301 4.8748 25 1 5.7942 2.8706 5.1434 26 6 5.1414 4.9052 4.9786 27 7 4.1517 5.7089 4.6517 28 14 6.7601 5.6149 5.5835 29 1 7.6616 5.8476 4.4265 30 1 6.5068 6.9015 6.2802 31 1 7.3986 4.6597 6.5243 32 1 -0.3634 0.4513 0.9232 33 1 -0.3634 0.5739 -0.8525 34 1 -0.3634 -1.0252 -0.0708 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 0.5376 2.0757 -1.4081 38 1 1.9298 3.1765 -1.2734 39 1 4.0974 2.5526 -2.2936 40 1 5.1746 1.4219 -4.1972 41 1 3.9557 -0.3138 -5.4485 42 1 0.8984 -0.7611 -5.8271 43 1 2.1598 -1.9466 -5.4127 44 1 0.7543 -1.7315 -4.3419 45 1 0.5876 0.2025 -2.8834 46 1 3.2179 0.3371 2.4625 47 1 4.1291 1.8530 2.1943 48 1 1.4594 0.6059 4.4812 49 1 1.8058 1.8704 5.7245 50 1 2.8178 4.3826 3.1510 51 1 2.2453 4.3853 4.8466 52 1 4.2630 6.6697 4.7245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032666733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:13 Heat of formation + Delta-G solvation = 28.107822 kcal Electronic energy + Delta-G solvation = -30808.312068 eV Core-core repulsion = 26966.566097 eV Total energy + Delta-G solvation = -3841.745971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.39610 -39.59058 -38.17087 -35.44447 -33.63379 -32.99772 -31.67671 -31.29991 -29.29256 -28.67390 -28.45712 -26.98197 -25.30291 -25.10480 -23.59703 -22.36273 -22.03407 -20.76494 -19.88539 -19.36715 -18.20509 -17.10662 -16.60659 -16.29405 -15.76954 -15.62534 -15.44953 -14.92598 -14.74360 -14.19908 -14.02462 -13.87945 -13.76737 -13.28189 -13.22196 -12.91069 -12.74863 -12.65463 -12.54257 -12.16124 -12.10681 -11.87957 -11.83667 -11.68382 -11.34831 -11.25058 -11.15071 -11.07899 -10.92359 -10.85260 -10.80468 -10.74147 -10.56987 -10.52063 -10.24361 -10.07900 -9.64983 -9.27091 -8.85134 -8.70998 -8.63206 -7.95309 -6.93149 -5.77241 -3.12174 1.25849 1.30288 3.09934 3.36260 3.40879 3.41140 3.43787 3.68816 4.41064 4.57866 4.65461 4.75221 4.89626 4.92270 4.95015 5.06796 5.09763 5.17836 5.19780 5.32599 5.35970 5.37586 5.41476 5.47151 5.49940 5.56684 5.59636 5.63127 5.65900 5.72038 5.77506 5.88238 5.90967 5.95117 5.97986 6.06932 6.09592 6.18660 6.23908 6.29335 6.37757 6.40397 6.42447 6.47448 6.52600 6.59952 6.62549 6.71488 6.94256 7.42931 7.50672 7.72364 8.10003 8.16113 8.65689 9.10388 9.70632 10.39591 11.34363 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.002911 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.297841 B = 9616.520589 C =10720.328681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.096 4.096 4 H 0.088 0.912 5 C -0.066 4.066 6 C -0.068 4.068 7 C -0.121 4.121 8 C -0.114 4.114 9 C -0.129 4.129 10 C -0.089 4.089 11 C -0.113 4.113 12 C -0.115 4.115 13 C 0.535 3.465 14 O -0.554 6.554 15 N -0.605 5.605 16 C 0.085 3.915 17 C 0.141 3.859 18 H 0.105 0.895 19 C -0.152 4.152 20 C 0.098 3.902 21 H 0.112 0.888 22 C 0.176 3.824 23 N -0.596 5.596 24 C -0.232 4.232 25 H 0.080 0.920 26 C -0.006 4.006 27 N -0.919 5.919 28 Si 0.912 3.088 29 H -0.289 1.289 30 H -0.291 1.291 31 H -0.281 1.281 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.121 0.879 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.055 0.945 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -14.848 -14.703 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.117 4.117 4 H 0.107 0.893 5 C -0.104 4.104 6 C -0.068 4.068 7 C -0.139 4.139 8 C -0.132 4.132 9 C -0.147 4.147 10 C -0.089 4.089 11 C -0.170 4.170 12 C -0.133 4.133 13 C 0.324 3.676 14 O -0.433 6.433 15 N -0.338 5.338 16 C -0.041 4.041 17 C 0.032 3.968 18 H 0.123 0.877 19 C -0.192 4.192 20 C -0.005 4.005 21 H 0.129 0.871 22 C 0.051 3.949 23 N -0.320 5.320 24 C -0.360 4.360 25 H 0.098 0.902 26 C -0.203 4.203 27 N -0.565 5.565 28 Si 0.743 3.257 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.206 1.206 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.082 -14.212 -14.799 21.139 hybrid contribution 1.095 0.571 0.238 1.258 sum -3.988 -13.641 -14.561 20.347 Atomic orbital electron populations 1.21850 0.95345 1.01063 1.02792 1.21446 0.96648 0.94129 1.02593 1.21245 1.01489 0.96060 0.92924 0.89336 1.20487 1.01278 0.98818 0.89794 1.19890 0.94346 0.96167 0.96364 1.21121 0.94916 1.00397 0.97506 1.21118 0.99759 0.96488 0.95860 1.20982 0.94606 0.98768 1.00340 1.19891 0.94779 0.97851 0.96375 1.20780 0.99887 0.96661 0.99691 1.20962 0.99939 0.96778 0.95632 1.20017 0.83719 0.81140 0.82738 1.90650 1.26832 1.41933 1.83920 1.49224 1.24388 1.52886 1.07347 1.23289 0.85924 0.94656 1.00224 1.23159 0.93629 0.89107 0.90929 0.87671 1.24218 0.98096 0.97582 0.99265 1.24401 0.99122 0.95929 0.81037 0.87052 1.21803 0.83868 0.90185 0.99027 1.45109 1.11994 0.98503 1.76433 1.19043 0.89429 0.90337 1.37204 0.90188 1.24826 0.97927 0.95990 1.01526 1.69926 1.30507 1.02748 1.53329 0.86120 0.82769 0.78555 0.78284 1.21623 1.21680 1.20637 0.92357 0.92215 0.92999 0.90787 0.91664 0.89628 0.90514 0.85993 0.86189 0.86468 0.91334 0.91715 0.91576 0.86094 0.92934 0.91234 0.91719 0.89888 0.93590 0.92713 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.25 37.16 0.34 -1.45 16 2 C -0.11 -1.29 5.44 -26.73 -0.15 -1.44 16 3 C -0.10 -1.33 2.08 -91.77 -0.19 -1.52 16 4 H 0.09 1.24 7.52 -51.93 -0.39 0.85 16 5 C -0.07 -0.88 4.13 -27.88 -0.12 -1.00 16 6 C -0.07 -0.80 4.49 -104.62 -0.47 -1.27 16 7 C -0.12 -1.41 9.73 -39.58 -0.38 -1.79 16 8 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 9 C -0.13 -1.24 9.70 -39.58 -0.38 -1.63 16 10 C -0.09 -0.86 5.88 -104.62 -0.62 -1.48 16 11 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 12 C -0.12 -1.22 7.94 -39.59 -0.31 -1.54 16 13 C 0.54 9.51 5.81 -10.99 -0.06 9.45 16 14 O -0.55 -11.45 16.06 5.55 0.09 -11.36 16 15 N -0.61 -11.00 2.95 -156.56 -0.46 -11.46 16 16 C 0.08 1.42 5.63 -1.67 -0.01 1.42 16 17 C 0.14 2.58 5.53 -62.55 -0.35 2.23 16 18 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 19 C -0.15 -2.55 6.83 -22.10 -0.15 -2.71 16 20 C 0.10 1.89 5.25 -62.35 -0.33 1.56 16 21 H 0.11 2.11 8.08 -51.93 -0.42 1.69 16 22 C 0.18 4.24 4.74 -1.95 -0.01 4.23 16 23 N -0.60 -14.24 3.01 -156.74 -0.47 -14.71 16 24 C -0.23 -6.14 10.37 -15.06 -0.16 -6.30 16 25 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 26 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 27 N -0.92 -26.75 10.53 55.49 0.58 -26.17 16 28 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 32 H 0.06 0.81 7.02 -51.93 -0.36 0.45 16 33 H 0.06 0.69 5.82 -51.93 -0.30 0.39 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.80 6.25 -51.93 -0.32 0.47 16 36 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 37 H 0.09 1.16 6.06 -51.93 -0.31 0.84 16 38 H 0.08 1.12 8.12 -51.93 -0.42 0.69 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.12 1.16 7.58 -52.49 -0.40 0.76 16 46 H 0.05 0.73 7.48 -51.93 -0.39 0.34 16 47 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 50 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 51 H 0.05 1.46 7.42 -51.93 -0.39 1.07 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 403.60 15.07 6.08 6.08 Total: -1.00 -31.15 403.60 -11.36 -42.51 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.69 Total: 3.97 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -3.47 Total: -5.50 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.35 Total: -52.34 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.15 -11.36 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032666733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.620 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds