Wall clock time and date at job start Wed Apr 1 2020 02:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46910 * 2 1 4 4 H 1.08996 * 109.46594 * 175.67598 * 3 2 1 5 5 C 1.52999 * 109.46901 * 295.67042 * 3 2 1 6 6 C 1.50698 * 109.47581 * 296.49350 * 5 3 2 7 7 C 1.38259 * 119.99694 * 275.65184 * 6 5 3 8 8 C 1.38219 * 119.99877 * 179.80828 * 7 6 5 9 9 C 1.38253 * 119.99652 * 0.39307 * 8 7 6 10 10 C 1.38219 * 120.00317 * 359.85856 * 9 8 7 11 11 C 1.50697 * 120.00149 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.00139 * 95.91589 * 6 5 3 13 13 C 1.50697 * 109.47111 * 55.67192 * 3 2 1 14 14 O 1.21283 * 119.99765 * 263.88832 * 13 3 2 15 15 N 1.34776 * 120.00011 * 83.88767 * 13 3 2 16 16 C 1.47865 * 126.94218 * 4.64317 * 15 13 3 17 17 C 1.56026 * 105.10296 * 181.97682 * 16 15 13 18 18 H 1.08997 * 116.25036 * 158.83689 * 17 16 15 19 19 C 1.57081 * 99.60251 * 32.80656 * 17 16 15 20 20 C 1.49291 * 126.94147 * 184.32772 * 15 13 3 21 21 H 1.08993 * 116.15401 * 16.72981 * 20 15 13 22 22 C 1.56026 * 104.09186 * 246.71988 * 20 15 13 23 23 N 1.47357 * 105.14722 * 288.61024 * 22 20 15 24 24 C 1.36938 * 126.78850 * 182.06081 * 23 22 20 25 25 H 1.08008 * 120.00066 * 180.28437 * 24 23 22 26 26 C 1.38811 * 120.00005 * 0.28191 * 24 23 22 27 27 N 1.31621 * 120.00028 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00063 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46779 * 90.00166 * 28 26 24 30 30 H 1.48493 * 109.47268 * 210.00029 * 28 26 24 31 31 H 1.48499 * 109.47055 * 330.00485 * 28 26 24 32 32 H 1.08994 * 109.47410 * 296.05386 * 1 2 3 33 33 H 1.09002 * 109.47633 * 56.05331 * 1 2 3 34 34 H 1.09004 * 109.47456 * 176.04972 * 1 2 3 35 35 H 1.09001 * 109.46895 * 240.00306 * 2 1 3 36 36 H 1.08995 * 109.46719 * 119.99853 * 2 1 3 37 37 H 1.08996 * 109.47421 * 56.49425 * 5 3 2 38 38 H 1.08997 * 109.46651 * 176.49222 * 5 3 2 39 39 H 1.07999 * 120.00160 * 359.97438 * 7 6 5 40 40 H 1.08000 * 119.99920 * 180.22817 * 8 7 6 41 41 H 1.08011 * 119.99755 * 179.83621 * 9 8 7 42 42 H 1.08996 * 109.46816 * 269.98002 * 11 10 9 43 43 H 1.09009 * 109.46952 * 29.97882 * 11 10 9 44 44 H 1.08999 * 109.47242 * 149.97094 * 11 10 9 45 45 H 1.08001 * 119.99975 * 359.97438 * 12 6 5 46 46 H 1.08999 * 110.31853 * 300.88443 * 16 15 13 47 47 H 1.09001 * 110.31643 * 62.97655 * 16 15 13 48 48 H 1.09004 * 112.37072 * 64.27890 * 19 17 16 49 49 H 1.09002 * 112.36809 * 191.61915 * 19 17 16 50 50 H 1.08998 * 110.31037 * 47.67668 * 22 20 15 51 51 H 1.08996 * 110.31185 * 169.86005 * 22 20 15 52 52 H 0.96996 * 119.99601 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1272 1.4435 0.0775 5 6 1.6208 2.1316 -1.3001 6 6 2.2782 1.4431 -2.4683 7 6 3.5642 1.7888 -2.8401 8 6 4.1687 1.1545 -3.9091 9 6 3.4843 0.1800 -4.6115 10 6 2.1968 -0.1619 -4.2431 11 6 1.4506 -1.2237 -5.0092 12 6 1.5936 0.4698 -3.1714 13 6 1.4520 2.1832 1.1733 14 8 0.4572 2.8611 1.0257 15 7 2.0316 2.0923 2.3867 16 6 3.2916 1.3938 2.7196 17 6 3.4567 1.5659 4.2615 18 1 4.1066 0.8467 4.7600 19 6 1.9453 1.5592 4.6892 20 6 1.5345 2.6820 3.6649 21 1 0.4902 2.9938 3.6761 22 6 2.5985 3.7657 4.0224 23 7 3.7954 3.0098 4.4319 24 6 4.9821 3.5301 4.8748 25 1 5.7942 2.8706 5.1434 26 6 5.1414 4.9052 4.9786 27 7 4.1517 5.7089 4.6517 28 14 6.7601 5.6149 5.5835 29 1 7.6616 5.8476 4.4265 30 1 6.5068 6.9015 6.2802 31 1 7.3986 4.6597 6.5243 32 1 -0.3634 0.4513 0.9232 33 1 -0.3634 0.5739 -0.8525 34 1 -0.3634 -1.0252 -0.0708 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 0.5376 2.0757 -1.4081 38 1 1.9298 3.1765 -1.2734 39 1 4.0974 2.5526 -2.2936 40 1 5.1746 1.4219 -4.1972 41 1 3.9557 -0.3138 -5.4485 42 1 0.8984 -0.7611 -5.8271 43 1 2.1598 -1.9466 -5.4127 44 1 0.7543 -1.7315 -4.3419 45 1 0.5876 0.2025 -2.8834 46 1 3.2179 0.3371 2.4625 47 1 4.1291 1.8530 2.1943 48 1 1.4594 0.6059 4.4812 49 1 1.8058 1.8704 5.7245 50 1 2.8178 4.3826 3.1510 51 1 2.2453 4.3853 4.8466 52 1 4.2630 6.6697 4.7245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032666733.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:11 Heat of formation + Delta-G solvation = 12.852750 kcal Electronic energy + Delta-G solvation = -30808.973578 eV Core-core repulsion = 26966.566097 eV Total energy + Delta-G solvation = -3842.407480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.79248 -40.61338 -39.53317 -36.58316 -35.47054 -33.80659 -33.23427 -32.30870 -30.85705 -30.26064 -29.66200 -27.65875 -26.99326 -26.30349 -25.17427 -23.48739 -22.95008 -21.95800 -21.40697 -20.67249 -19.73097 -18.67011 -17.99674 -17.33052 -17.25963 -16.88400 -16.60613 -16.22782 -15.81369 -15.66347 -15.33412 -15.29651 -14.64700 -14.53953 -14.15740 -14.07128 -13.87979 -13.70541 -13.65770 -13.48157 -13.31908 -13.21389 -13.09874 -12.88338 -12.83672 -12.70743 -12.68758 -12.34186 -12.26242 -12.13430 -12.06457 -11.97918 -11.87653 -11.80008 -11.74728 -11.55796 -11.48899 -10.85160 -10.59070 -9.65304 -9.51243 -9.44450 -8.91631 -7.85009 -5.21324 0.44372 0.51059 1.45582 1.47042 1.55801 1.68111 2.02425 2.47576 2.85603 3.31491 3.34830 3.51700 3.74423 3.76222 3.87711 3.90236 4.00018 4.03007 4.07196 4.09886 4.20839 4.29122 4.30134 4.41182 4.49917 4.56186 4.58752 4.63519 4.68509 4.72713 4.82883 4.84642 4.88919 4.91702 4.97768 4.98892 5.03943 5.05448 5.11163 5.14579 5.17637 5.25007 5.26342 5.35736 5.44335 5.44615 5.55435 5.60814 5.65060 5.72695 5.76586 6.09813 6.16358 6.71036 7.02839 7.21424 7.70722 8.40729 9.25638 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.002911 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.297841 B = 9616.520589 C =10720.328681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.087 4.087 4 H 0.089 0.911 5 C -0.059 4.059 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.090 4.090 11 C -0.113 4.113 12 C -0.120 4.120 13 C 0.530 3.470 14 O -0.589 6.589 15 N -0.609 5.609 16 C 0.092 3.908 17 C 0.135 3.865 18 H 0.137 0.863 19 C -0.128 4.128 20 C 0.099 3.901 21 H 0.111 0.889 22 C 0.190 3.810 23 N -0.616 5.616 24 C -0.230 4.230 25 H 0.096 0.904 26 C -0.073 4.073 27 N -0.958 5.958 28 Si 0.977 3.023 29 H -0.291 1.291 30 H -0.302 1.302 31 H -0.261 1.261 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.100 0.900 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.079 0.921 50 H -0.008 1.008 51 H 0.016 0.984 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -19.161 -15.845 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.108 4.108 4 H 0.107 0.893 5 C -0.097 4.097 6 C -0.077 4.077 7 C -0.159 4.159 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.090 4.090 11 C -0.169 4.169 12 C -0.138 4.138 13 C 0.321 3.679 14 O -0.471 6.471 15 N -0.342 5.342 16 C -0.032 4.032 17 C 0.029 3.971 18 H 0.154 0.846 19 C -0.167 4.167 20 C -0.004 4.004 21 H 0.129 0.871 22 C 0.064 3.936 23 N -0.340 5.340 24 C -0.358 4.358 25 H 0.114 0.886 26 C -0.266 4.266 27 N -0.607 5.607 28 Si 0.806 3.194 29 H -0.218 1.218 30 H -0.229 1.229 31 H -0.185 1.185 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.148 0.852 46 H 0.118 0.882 47 H 0.066 0.934 48 H 0.122 0.878 49 H 0.098 0.902 50 H 0.010 0.990 51 H 0.034 0.966 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.376 -18.599 -15.942 24.884 hybrid contribution 0.861 1.895 0.523 2.146 sum -3.515 -16.704 -15.419 23.002 Atomic orbital electron populations 1.21812 0.95276 1.02269 1.01305 1.21440 0.96569 0.92094 1.03813 1.21244 1.01130 0.97272 0.91131 0.89320 1.20353 1.01051 0.97649 0.90613 1.19733 0.94610 0.97076 0.96323 1.21179 0.95194 1.00978 0.98526 1.21345 1.00577 0.96448 0.95329 1.21319 0.94648 0.98246 1.00608 1.20235 0.94953 0.97949 0.95903 1.20835 1.00168 0.96157 0.99752 1.21089 1.00310 0.96500 0.95898 1.20769 0.83227 0.80654 0.83298 1.90627 1.28590 1.43448 1.84418 1.49317 1.24880 1.52841 1.07150 1.23199 0.84513 0.96799 0.98679 1.23595 0.95008 0.86387 0.92153 0.84596 1.24110 0.96666 0.97897 0.98017 1.24208 0.97591 0.95522 0.83107 0.87124 1.21376 0.85811 0.91021 0.95380 1.45369 1.11178 1.01327 1.76127 1.19549 0.90584 0.90635 1.35063 0.88599 1.25687 1.01080 0.96804 1.02984 1.70181 1.32644 1.02175 1.55704 0.85086 0.79070 0.77490 0.77746 1.21793 1.22888 1.18525 0.94895 0.92537 0.90520 0.89183 0.90627 0.90113 0.93071 0.86922 0.84648 0.84112 0.90557 0.90376 0.90821 0.85163 0.88210 0.93360 0.87780 0.90232 0.98975 0.96614 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.25 71.98 0.67 -2.52 16 2 C -0.10 -2.12 5.44 30.60 0.17 -1.95 16 3 C -0.09 -2.37 2.08 -11.54 -0.02 -2.39 16 4 H 0.09 2.43 7.52 -2.39 -0.02 2.41 16 5 C -0.06 -1.61 4.13 29.85 0.12 -1.48 16 6 C -0.08 -1.79 4.49 -19.87 -0.09 -1.88 16 7 C -0.14 -3.23 9.73 22.27 0.22 -3.01 16 8 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 9 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 10 C -0.09 -1.50 5.88 -19.87 -0.12 -1.62 16 11 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 12 C -0.12 -2.33 7.94 22.27 0.18 -2.15 16 13 C 0.53 19.07 5.81 87.66 0.51 19.58 16 14 O -0.59 -25.30 16.06 -3.04 -0.05 -25.35 16 15 N -0.61 -21.98 2.95 -767.63 -2.26 -24.25 16 16 C 0.09 2.92 5.63 87.17 0.49 3.41 16 17 C 0.13 4.63 5.53 46.93 0.26 4.89 16 18 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 19 C -0.13 -3.99 6.83 33.59 0.23 -3.76 16 20 C 0.10 3.89 5.25 47.06 0.25 4.14 16 21 H 0.11 4.34 8.08 -2.39 -0.02 4.32 16 22 C 0.19 9.68 4.74 87.26 0.41 10.10 16 23 N -0.62 -29.74 3.01 -649.80 -1.95 -31.69 16 24 C -0.23 -12.22 10.37 84.03 0.87 -11.35 16 25 H 0.10 4.69 7.83 -2.91 -0.02 4.67 16 26 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 27 N -0.96 -59.15 10.53 21.65 0.23 -58.92 16 28 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 29 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 30 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 31 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 32 H 0.03 0.87 7.02 -2.39 -0.02 0.85 16 33 H 0.06 1.23 5.82 -2.39 -0.01 1.22 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.65 6.25 -2.39 -0.01 1.63 16 36 H 0.08 1.44 7.48 -2.39 -0.02 1.42 16 37 H 0.08 2.24 6.06 -2.39 -0.01 2.23 16 38 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 39 H 0.11 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.14 1.63 8.06 -2.90 -0.02 1.61 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 44 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 45 H 0.13 2.22 7.58 -2.91 -0.02 2.20 16 46 H 0.10 2.29 7.48 -2.39 -0.02 2.28 16 47 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 48 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 49 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 50 H -0.01 -0.48 7.68 -2.39 -0.02 -0.50 16 51 H 0.02 0.90 7.42 -2.39 -0.02 0.89 16 52 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -72.95 403.60 4.64 -68.31 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.89 Total: 22.44 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.76 Total: 1.84 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.99 Total: -114.86 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.95 4.64 -68.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032666733.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.165 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds